Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1062 and HP15_1063 are separated by 165 nucleotides HP15_1063 and HP15_1064 overlap by 4 nucleotides HP15_1064 and HP15_1065 are separated by 82 nucleotides
HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401
_1062
HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857
_1063
HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693
_1064
HP15_1065: HP15_1065 - aminopeptidase N, at 1,088,776 to 1,091,418
_1065
Position (kb)
1087
1088 Strain fitness (log2 ratio)
-1
0
1 at 1086.574 kb on - strand at 1086.588 kb on - strand at 1086.610 kb on - strand at 1086.610 kb on - strand at 1086.739 kb on + strand, within HP15_1062 at 1086.747 kb on - strand, within HP15_1062 at 1086.820 kb on - strand, within HP15_1062 at 1086.840 kb on - strand, within HP15_1062 at 1086.974 kb on - strand, within HP15_1062 at 1087.161 kb on + strand, within HP15_1062 at 1087.277 kb on + strand, within HP15_1062 at 1087.332 kb on + strand at 1087.446 kb on + strand at 1087.808 kb on - strand, within HP15_1063 at 1087.851 kb on + strand at 1087.935 kb on - strand at 1088.184 kb on + strand, within HP15_1064 at 1088.473 kb on - strand, within HP15_1064 at 1088.511 kb on + strand, within HP15_1064 at 1088.516 kb on + strand, within HP15_1064 at 1088.534 kb on - strand, within HP15_1064 at 1088.549 kb on - strand, within HP15_1064 at 1088.554 kb on + strand, within HP15_1064 at 1088.600 kb on - strand, within HP15_1064 at 1088.607 kb on + strand, within HP15_1064 at 1088.731 kb on - strand at 1088.798 kb on + strand at 1088.806 kb on - strand at 1088.835 kb on + strand at 1088.843 kb on + strand at 1088.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,086,574 - +0.5 1,086,588 - -0.4 1,086,610 - -0.8 1,086,610 - -0.5 1,086,739 + HP15_1062 0.22 +0.6 1,086,747 - HP15_1062 0.23 +0.3 1,086,820 - HP15_1062 0.31 +0.8 1,086,840 - HP15_1062 0.34 +0.4 1,086,974 - HP15_1062 0.49 -0.0 1,087,161 + HP15_1062 0.72 -1.1 1,087,277 + HP15_1062 0.85 +0.4 1,087,332 + -0.3 1,087,446 + -0.8 1,087,808 - HP15_1063 0.83 -1.4 1,087,851 + -0.2 1,087,935 - +0.9 1,088,184 + HP15_1064 0.39 +0.1 1,088,473 - HP15_1064 0.74 -0.1 1,088,511 + HP15_1064 0.78 -0.3 1,088,516 + HP15_1064 0.79 -0.2 1,088,534 - HP15_1064 0.81 -0.4 1,088,549 - HP15_1064 0.83 -0.8 1,088,554 + HP15_1064 0.83 -0.4 1,088,600 - HP15_1064 0.89 -0.7 1,088,607 + HP15_1064 0.90 +0.3 1,088,731 - -0.1 1,088,798 + -0.3 1,088,806 - +0.6 1,088,835 + +0.2 1,088,843 + -0.3 1,088,843 + -0.8
Or see this region's nucleotide sequence