Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1059 and HP15_1060 are separated by 111 nucleotides HP15_1060 and HP15_1061 overlap by 4 nucleotides HP15_1061 and HP15_1062 are separated by 61 nucleotides
HP15_1059: HP15_1059 - ATPase involved in DNA repair, at 1,083,283 to 1,084,482
_1059
HP15_1060: HP15_1060 - inorganic polyphosphate/ATP-NAD kinase, at 1,084,594 to 1,085,478
_1060
HP15_1061: HP15_1061 - diadenosine tetraphosphatase and related serine/threonine protein phosphatase, at 1,085,475 to 1,086,494
_1061
HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401
_1062
Position (kb)
1085
1086
1087 Strain fitness (log2 ratio)
-1
0
1 at 1084.484 kb on - strand at 1085.544 kb on + strand at 1085.553 kb on - strand at 1085.596 kb on + strand, within HP15_1061 at 1085.670 kb on + strand, within HP15_1061 at 1085.670 kb on + strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.678 kb on - strand, within HP15_1061 at 1085.692 kb on + strand, within HP15_1061 at 1085.742 kb on + strand, within HP15_1061 at 1085.747 kb on + strand, within HP15_1061 at 1085.808 kb on + strand, within HP15_1061 at 1085.843 kb on + strand, within HP15_1061 at 1085.885 kb on + strand, within HP15_1061 at 1085.885 kb on + strand, within HP15_1061 at 1085.893 kb on - strand, within HP15_1061 at 1085.893 kb on - strand, within HP15_1061 at 1085.939 kb on - strand, within HP15_1061 at 1085.978 kb on + strand, within HP15_1061 at 1086.083 kb on - strand, within HP15_1061 at 1086.107 kb on - strand, within HP15_1061 at 1086.146 kb on + strand, within HP15_1061 at 1086.162 kb on + strand, within HP15_1061 at 1086.162 kb on + strand, within HP15_1061 at 1086.162 kb on + strand, within HP15_1061 at 1086.170 kb on - strand, within HP15_1061 at 1086.535 kb on + strand at 1086.574 kb on - strand at 1086.588 kb on - strand at 1086.610 kb on - strand at 1086.610 kb on - strand at 1086.739 kb on + strand, within HP15_1062 at 1086.747 kb on - strand, within HP15_1062 at 1086.820 kb on - strand, within HP15_1062 at 1086.840 kb on - strand, within HP15_1062 at 1086.974 kb on - strand, within HP15_1062 at 1087.161 kb on + strand, within HP15_1062 at 1087.277 kb on + strand, within HP15_1062 at 1087.332 kb on + strand at 1087.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,084,484 - -0.2 1,085,544 + -1.1 1,085,553 - +0.0 1,085,596 + HP15_1061 0.12 -1.5 1,085,670 + HP15_1061 0.19 -0.0 1,085,670 + HP15_1061 0.19 -0.6 1,085,678 - HP15_1061 0.20 +1.3 1,085,678 - HP15_1061 0.20 -0.9 1,085,678 - HP15_1061 0.20 +0.3 1,085,678 - HP15_1061 0.20 +0.2 1,085,678 - HP15_1061 0.20 -0.2 1,085,678 - HP15_1061 0.20 -0.7 1,085,692 + HP15_1061 0.21 -1.0 1,085,742 + HP15_1061 0.26 -1.2 1,085,747 + HP15_1061 0.27 -1.3 1,085,808 + HP15_1061 0.33 -1.0 1,085,843 + HP15_1061 0.36 -0.0 1,085,885 + HP15_1061 0.40 -1.1 1,085,885 + HP15_1061 0.40 -0.6 1,085,893 - HP15_1061 0.41 -0.5 1,085,893 - HP15_1061 0.41 +0.1 1,085,939 - HP15_1061 0.45 -0.0 1,085,978 + HP15_1061 0.49 -0.9 1,086,083 - HP15_1061 0.60 -1.0 1,086,107 - HP15_1061 0.62 -0.3 1,086,146 + HP15_1061 0.66 -0.7 1,086,162 + HP15_1061 0.67 +0.0 1,086,162 + HP15_1061 0.67 -0.6 1,086,162 + HP15_1061 0.67 -0.2 1,086,170 - HP15_1061 0.68 -1.4 1,086,535 + +0.2 1,086,574 - +0.5 1,086,588 - -0.4 1,086,610 - -0.8 1,086,610 - -0.5 1,086,739 + HP15_1062 0.22 +0.6 1,086,747 - HP15_1062 0.23 +0.3 1,086,820 - HP15_1062 0.31 +0.8 1,086,840 - HP15_1062 0.34 +0.4 1,086,974 - HP15_1062 0.49 -0.0 1,087,161 + HP15_1062 0.72 -1.1 1,087,277 + HP15_1062 0.85 +0.4 1,087,332 + -0.3 1,087,446 + -0.8
Or see this region's nucleotide sequence