Experiment: Chlorite 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1896 and Sama_1897 are separated by 32 nucleotides Sama_1897 and Sama_1898 overlap by 1 nucleotides
Sama_1896: Sama_1896 - putative diguanylate phosphodiesterase (RefSeq), at 2,313,636 to 2,314,424
_1896
Sama_1897: Sama_1897 - MoxR protein (RefSeq), at 2,314,457 to 2,315,386
_1897
Sama_1898: Sama_1898 - hypothetical protein (RefSeq), at 2,315,386 to 2,316,414
_1898
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2313.518 kb on - strand at 2313.529 kb on + strand at 2313.529 kb on + strand at 2313.529 kb on + strand at 2313.530 kb on - strand at 2313.535 kb on + strand at 2313.536 kb on - strand at 2313.542 kb on + strand at 2313.562 kb on + strand at 2313.632 kb on + strand at 2313.633 kb on - strand at 2313.687 kb on + strand at 2313.717 kb on - strand, within Sama_1896 at 2313.751 kb on - strand, within Sama_1896 at 2313.787 kb on + strand, within Sama_1896 at 2313.875 kb on + strand, within Sama_1896 at 2313.876 kb on - strand, within Sama_1896 at 2313.876 kb on - strand, within Sama_1896 at 2313.886 kb on - strand, within Sama_1896 at 2313.886 kb on - strand, within Sama_1896 at 2314.002 kb on - strand, within Sama_1896 at 2314.007 kb on + strand, within Sama_1896 at 2314.007 kb on + strand, within Sama_1896 at 2314.008 kb on - strand, within Sama_1896 at 2314.010 kb on + strand, within Sama_1896 at 2314.011 kb on - strand, within Sama_1896 at 2314.011 kb on - strand, within Sama_1896 at 2314.011 kb on - strand, within Sama_1896 at 2314.011 kb on - strand, within Sama_1896 at 2314.105 kb on + strand, within Sama_1896 at 2314.139 kb on + strand, within Sama_1896 at 2314.139 kb on + strand, within Sama_1896 at 2314.212 kb on + strand, within Sama_1896 at 2314.240 kb on + strand, within Sama_1896 at 2314.252 kb on + strand, within Sama_1896 at 2314.333 kb on + strand, within Sama_1896 at 2314.333 kb on + strand, within Sama_1896 at 2314.333 kb on + strand, within Sama_1896 at 2314.334 kb on - strand, within Sama_1896 at 2314.391 kb on + strand at 2314.391 kb on + strand at 2314.425 kb on + strand at 2314.515 kb on + strand at 2314.713 kb on + strand, within Sama_1897 at 2314.727 kb on - strand, within Sama_1897 at 2314.747 kb on - strand, within Sama_1897 at 2314.747 kb on - strand, within Sama_1897 at 2314.870 kb on + strand, within Sama_1897 at 2315.000 kb on - strand, within Sama_1897 at 2315.022 kb on + strand, within Sama_1897 at 2315.023 kb on - strand, within Sama_1897 at 2315.023 kb on - strand, within Sama_1897 at 2315.103 kb on + strand, within Sama_1897 at 2315.138 kb on + strand, within Sama_1897 at 2315.139 kb on - strand, within Sama_1897 at 2315.139 kb on - strand, within Sama_1897 at 2315.139 kb on - strand, within Sama_1897 at 2315.139 kb on - strand, within Sama_1897 at 2315.142 kb on + strand, within Sama_1897 at 2315.142 kb on + strand, within Sama_1897 at 2315.142 kb on + strand, within Sama_1897 at 2315.142 kb on + strand, within Sama_1897 at 2315.399 kb on + strand at 2315.400 kb on - strand at 2315.400 kb on - strand at 2315.530 kb on + strand, within Sama_1898 at 2315.549 kb on - strand, within Sama_1898 at 2315.610 kb on + strand, within Sama_1898 at 2315.610 kb on + strand, within Sama_1898 at 2315.611 kb on - strand, within Sama_1898 at 2315.611 kb on - strand, within Sama_1898 at 2315.615 kb on - strand, within Sama_1898 at 2315.615 kb on - strand, within Sama_1898 at 2315.615 kb on - strand, within Sama_1898 at 2315.615 kb on - strand, within Sama_1898 at 2315.654 kb on + strand, within Sama_1898 at 2315.671 kb on + strand, within Sama_1898 at 2315.671 kb on + strand, within Sama_1898 at 2315.672 kb on - strand, within Sama_1898 at 2315.672 kb on - strand, within Sama_1898 at 2315.672 kb on - strand, within Sama_1898 at 2315.764 kb on + strand, within Sama_1898 at 2315.764 kb on + strand, within Sama_1898 at 2315.765 kb on - strand, within Sama_1898 at 2315.765 kb on - strand, within Sama_1898 at 2315.765 kb on - strand, within Sama_1898 at 2315.765 kb on - strand, within Sama_1898 at 2315.765 kb on - strand, within Sama_1898 at 2315.778 kb on + strand, within Sama_1898 at 2315.778 kb on + strand, within Sama_1898 at 2315.779 kb on - strand, within Sama_1898 at 2315.779 kb on - strand, within Sama_1898 at 2315.828 kb on + strand, within Sama_1898 at 2315.828 kb on + strand, within Sama_1898 at 2315.828 kb on + strand, within Sama_1898 at 2315.829 kb on - strand, within Sama_1898 at 2315.829 kb on - strand, within Sama_1898 at 2315.831 kb on + strand, within Sama_1898 at 2315.832 kb on - strand, within Sama_1898 at 2315.832 kb on - strand, within Sama_1898 at 2315.949 kb on + strand, within Sama_1898 at 2316.017 kb on - strand, within Sama_1898 at 2316.026 kb on + strand, within Sama_1898 at 2316.034 kb on + strand, within Sama_1898 at 2316.034 kb on + strand, within Sama_1898 at 2316.035 kb on - strand, within Sama_1898 at 2316.035 kb on - strand, within Sama_1898 at 2316.035 kb on - strand, within Sama_1898 at 2316.035 kb on - strand, within Sama_1898 at 2316.035 kb on - strand, within Sama_1898 at 2316.197 kb on - strand, within Sama_1898 at 2316.212 kb on + strand, within Sama_1898 at 2316.333 kb on - strand at 2316.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.078125 mM remove 2,313,518 - -0.1 2,313,529 + +0.3 2,313,529 + -0.9 2,313,529 + -0.9 2,313,530 - +0.7 2,313,535 + +3.0 2,313,536 - +0.3 2,313,542 + +0.1 2,313,562 + +0.5 2,313,632 + -0.9 2,313,633 - +0.7 2,313,687 + -0.5 2,313,717 - Sama_1896 0.10 +0.1 2,313,751 - Sama_1896 0.15 -0.6 2,313,787 + Sama_1896 0.19 +0.1 2,313,875 + Sama_1896 0.30 -0.0 2,313,876 - Sama_1896 0.30 -0.6 2,313,876 - Sama_1896 0.30 -1.1 2,313,886 - Sama_1896 0.32 +0.7 2,313,886 - Sama_1896 0.32 -1.1 2,314,002 - Sama_1896 0.46 -0.1 2,314,007 + Sama_1896 0.47 +1.7 2,314,007 + Sama_1896 0.47 +0.1 2,314,008 - Sama_1896 0.47 +1.4 2,314,010 + Sama_1896 0.47 -0.1 2,314,011 - Sama_1896 0.48 -3.0 2,314,011 - Sama_1896 0.48 -0.0 2,314,011 - Sama_1896 0.48 +1.2 2,314,011 - Sama_1896 0.48 +0.4 2,314,105 + Sama_1896 0.59 +1.1 2,314,139 + Sama_1896 0.64 -0.0 2,314,139 + Sama_1896 0.64 -0.6 2,314,212 + Sama_1896 0.73 +0.1 2,314,240 + Sama_1896 0.77 +0.0 2,314,252 + Sama_1896 0.78 +0.1 2,314,333 + Sama_1896 0.88 +0.3 2,314,333 + Sama_1896 0.88 +1.7 2,314,333 + Sama_1896 0.88 -0.5 2,314,334 - Sama_1896 0.88 -2.1 2,314,391 + -0.5 2,314,391 + -0.1 2,314,425 + -1.8 2,314,515 + +0.9 2,314,713 + Sama_1897 0.28 -0.3 2,314,727 - Sama_1897 0.29 -0.5 2,314,747 - Sama_1897 0.31 +0.4 2,314,747 - Sama_1897 0.31 -0.8 2,314,870 + Sama_1897 0.44 -0.2 2,315,000 - Sama_1897 0.58 -0.9 2,315,022 + Sama_1897 0.61 +0.7 2,315,023 - Sama_1897 0.61 -0.2 2,315,023 - Sama_1897 0.61 -0.8 2,315,103 + Sama_1897 0.69 -2.4 2,315,138 + Sama_1897 0.73 -1.8 2,315,139 - Sama_1897 0.73 +0.1 2,315,139 - Sama_1897 0.73 -0.3 2,315,139 - Sama_1897 0.73 +0.1 2,315,139 - Sama_1897 0.73 -1.5 2,315,142 + Sama_1897 0.74 +1.1 2,315,142 + Sama_1897 0.74 -1.2 2,315,142 + Sama_1897 0.74 -0.1 2,315,142 + Sama_1897 0.74 -1.2 2,315,399 + -1.6 2,315,400 - -0.2 2,315,400 - -0.2 2,315,530 + Sama_1898 0.14 -1.5 2,315,549 - Sama_1898 0.16 -0.4 2,315,610 + Sama_1898 0.22 +0.4 2,315,610 + Sama_1898 0.22 -0.4 2,315,611 - Sama_1898 0.22 +0.7 2,315,611 - Sama_1898 0.22 +0.1 2,315,615 - Sama_1898 0.22 -1.8 2,315,615 - Sama_1898 0.22 +0.8 2,315,615 - Sama_1898 0.22 +0.7 2,315,615 - Sama_1898 0.22 -0.1 2,315,654 + Sama_1898 0.26 +0.0 2,315,671 + Sama_1898 0.28 -0.5 2,315,671 + Sama_1898 0.28 -1.6 2,315,672 - Sama_1898 0.28 -1.3 2,315,672 - Sama_1898 0.28 +0.7 2,315,672 - Sama_1898 0.28 -1.3 2,315,764 + Sama_1898 0.37 -1.2 2,315,764 + Sama_1898 0.37 +3.3 2,315,765 - Sama_1898 0.37 -1.3 2,315,765 - Sama_1898 0.37 -1.5 2,315,765 - Sama_1898 0.37 +0.2 2,315,765 - Sama_1898 0.37 +1.4 2,315,765 - Sama_1898 0.37 +0.3 2,315,778 + Sama_1898 0.38 -0.3 2,315,778 + Sama_1898 0.38 -0.3 2,315,779 - Sama_1898 0.38 -1.1 2,315,779 - Sama_1898 0.38 -1.1 2,315,828 + Sama_1898 0.43 +0.1 2,315,828 + Sama_1898 0.43 +2.7 2,315,828 + Sama_1898 0.43 +0.1 2,315,829 - Sama_1898 0.43 +0.7 2,315,829 - Sama_1898 0.43 -0.1 2,315,831 + Sama_1898 0.43 +2.0 2,315,832 - Sama_1898 0.43 -0.3 2,315,832 - Sama_1898 0.43 +0.7 2,315,949 + Sama_1898 0.55 -0.6 2,316,017 - Sama_1898 0.61 -0.1 2,316,026 + Sama_1898 0.62 -1.5 2,316,034 + Sama_1898 0.63 -1.2 2,316,034 + Sama_1898 0.63 +0.7 2,316,035 - Sama_1898 0.63 -2.6 2,316,035 - Sama_1898 0.63 -0.2 2,316,035 - Sama_1898 0.63 +0.1 2,316,035 - Sama_1898 0.63 +0.4 2,316,035 - Sama_1898 0.63 -0.8 2,316,197 - Sama_1898 0.79 +0.1 2,316,212 + Sama_1898 0.80 +0.3 2,316,333 - +1.4 2,316,333 - +0.1
Or see this region's nucleotide sequence