Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09270

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09250 and PGA1_c09260 are separated by 225 nucleotidesPGA1_c09260 and PGA1_c09270 are separated by 144 nucleotidesPGA1_c09270 and PGA1_c09280 are separated by 132 nucleotidesPGA1_c09280 and PGA1_c09290 are separated by 104 nucleotides PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497 _c09250 PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169 _c09260 PGA1_c09270: PGA1_c09270 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA, at 949,314 to 950,036 _c09270 PGA1_c09280: PGA1_c09280 - Uncharacterized protein conserved in bacteria, at 950,169 to 950,555 _c09280 PGA1_c09290: PGA1_c09290 - WGR domain., at 950,660 to 950,911 _c09290 Position (kb) 949 950 951Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 948.344 kb on - strand, within PGA1_c09250at 948.436 kb on + strand, within PGA1_c09250at 948.510 kb on + strandat 948.516 kb on - strandat 948.523 kb on - strandat 948.532 kb on + strandat 948.532 kb on + strandat 948.540 kb on - strandat 948.551 kb on - strandat 948.593 kb on + strandat 948.616 kb on + strandat 948.618 kb on - strandat 948.618 kb on - strandat 948.624 kb on - strandat 948.635 kb on + strandat 948.662 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.679 kb on + strandat 948.679 kb on + strandat 948.682 kb on - strandat 948.682 kb on - strandat 948.682 kb on - strandat 948.707 kb on + strandat 948.759 kb on + strandat 948.781 kb on + strand, within PGA1_c09260at 948.781 kb on + strand, within PGA1_c09260at 948.845 kb on - strand, within PGA1_c09260at 948.870 kb on + strand, within PGA1_c09260at 948.870 kb on + strand, within PGA1_c09260at 948.975 kb on - strand, within PGA1_c09260at 948.975 kb on - strand, within PGA1_c09260at 949.091 kb on + strand, within PGA1_c09260at 949.153 kb on - strandat 949.235 kb on - strandat 949.282 kb on + strandat 949.285 kb on - strandat 949.290 kb on - strandat 949.329 kb on + strandat 950.117 kb on + strandat 950.195 kb on - strandat 950.213 kb on - strand, within PGA1_c09280at 950.214 kb on + strand, within PGA1_c09280at 950.222 kb on - strand, within PGA1_c09280at 950.227 kb on - strand, within PGA1_c09280at 950.277 kb on - strand, within PGA1_c09280at 950.294 kb on + strand, within PGA1_c09280at 950.297 kb on + strand, within PGA1_c09280at 950.310 kb on - strand, within PGA1_c09280at 950.343 kb on + strand, within PGA1_c09280at 950.421 kb on + strand, within PGA1_c09280at 950.426 kb on + strand, within PGA1_c09280at 950.435 kb on - strand, within PGA1_c09280at 950.444 kb on - strand, within PGA1_c09280at 950.464 kb on + strand, within PGA1_c09280at 950.465 kb on + strand, within PGA1_c09280at 950.514 kb on + strand, within PGA1_c09280at 950.522 kb on - strandat 950.532 kb on - strandat 950.532 kb on - strandat 950.601 kb on + strandat 950.606 kb on + strandat 950.658 kb on + strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.666 kb on - strandat 950.781 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.802 kb on + strand, within PGA1_c09290at 950.810 kb on - strand, within PGA1_c09290at 950.812 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.859 kb on + strand, within PGA1_c09290at 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.903 kb on + strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.954 kb on + strandat 950.954 kb on + strandat 950.954 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.962 kb on - strandat 950.969 kb on + strandat 951.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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948,344 - PGA1_c09250 0.68 -0.6
948,436 + PGA1_c09250 0.87 +1.0
948,510 + +1.6
948,516 - +1.5
948,523 - +2.4
948,532 + -1.5
948,532 + -0.9
948,540 - -1.9
948,551 - +0.2
948,593 + +1.3
948,616 + +1.5
948,618 - -1.6
948,618 - +1.1
948,624 - -0.4
948,635 + -0.2
948,662 + -0.9
948,669 + -1.5
948,669 + -1.7
948,669 + +2.4
948,669 + +2.4
948,674 + +0.1
948,674 + -0.4
948,674 + -2.7
948,674 + -0.4
948,677 - -1.9
948,677 - +1.3
948,677 - -0.1
948,677 - -1.6
948,679 + +1.7
948,679 + +0.3
948,682 - -2.1
948,682 - -0.5
948,682 - +0.9
948,707 + -0.9
948,759 + -1.1
948,781 + PGA1_c09260 0.13 +1.2
948,781 + PGA1_c09260 0.13 -1.0
948,845 - PGA1_c09260 0.27 +1.5
948,870 + PGA1_c09260 0.33 -1.5
948,870 + PGA1_c09260 0.33 -0.2
948,975 - PGA1_c09260 0.56 -0.2
948,975 - PGA1_c09260 0.56 +2.4
949,091 + PGA1_c09260 0.82 -2.0
949,153 - +1.3
949,235 - -1.1
949,282 + +0.1
949,285 - +0.1
949,290 - +0.9
949,329 + -0.2
950,117 + -0.5
950,195 - -2.2
950,213 - PGA1_c09280 0.11 -2.7
950,214 + PGA1_c09280 0.12 -0.5
950,222 - PGA1_c09280 0.14 +1.1
950,227 - PGA1_c09280 0.15 +2.1
950,277 - PGA1_c09280 0.28 +0.5
950,294 + PGA1_c09280 0.32 +0.1
950,297 + PGA1_c09280 0.33 -2.2
950,310 - PGA1_c09280 0.36 -1.2
950,343 + PGA1_c09280 0.45 -1.4
950,421 + PGA1_c09280 0.65 +0.2
950,426 + PGA1_c09280 0.66 -1.4
950,435 - PGA1_c09280 0.69 +1.0
950,444 - PGA1_c09280 0.71 -0.7
950,464 + PGA1_c09280 0.76 +2.1
950,465 + PGA1_c09280 0.76 +1.7
950,514 + PGA1_c09280 0.89 -2.1
950,522 - +0.9
950,532 - +1.4
950,532 - -2.4
950,601 + +0.1
950,606 + +0.6
950,658 + +0.7
950,666 - +0.9
950,666 - +2.5
950,666 - -2.4
950,781 + PGA1_c09290 0.48 -0.9
950,802 + PGA1_c09290 0.56 +0.5
950,802 + PGA1_c09290 0.56 +3.3
950,810 - PGA1_c09290 0.60 -0.7
950,812 + PGA1_c09290 0.60 +0.5
950,859 + PGA1_c09290 0.79 +0.5
950,859 + PGA1_c09290 0.79 +1.1
950,903 + -1.6
950,903 + +0.9
950,903 + +1.7
950,903 + +2.4
950,911 - -0.4
950,911 - +2.4
950,911 - -1.3
950,911 - +0.8
950,954 + -1.4
950,954 + +1.8
950,954 - +2.0
950,962 - +0.1
950,962 - +0.5
950,962 - +1.4
950,962 - -2.4
950,962 - +4.4
950,969 + +2.4
951,032 - -0.7

Or see this region's nucleotide sequence