Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06230

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06220 and PGA1_c06230 are separated by 113 nucleotidesPGA1_c06230 and PGA1_c06240 are separated by 319 nucleotides PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774 _c06220 PGA1_c06230: PGA1_c06230 - putative protein Smf, at 637,888 to 639,126 _c06230 PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867 _c06240 Position (kb) 637 638 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 637.881 kb on - strandat 637.889 kb on - strandat 637.891 kb on + strandat 637.976 kb on + strandat 638.069 kb on + strand, within PGA1_c06230at 638.100 kb on + strand, within PGA1_c06230at 638.108 kb on - strand, within PGA1_c06230at 638.120 kb on - strand, within PGA1_c06230at 638.197 kb on + strand, within PGA1_c06230at 638.267 kb on - strand, within PGA1_c06230at 638.285 kb on - strand, within PGA1_c06230at 638.293 kb on + strand, within PGA1_c06230at 638.301 kb on - strand, within PGA1_c06230at 638.339 kb on + strand, within PGA1_c06230at 638.492 kb on + strand, within PGA1_c06230at 638.492 kb on + strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.569 kb on - strand, within PGA1_c06230at 638.569 kb on - strand, within PGA1_c06230at 638.592 kb on + strand, within PGA1_c06230at 638.652 kb on + strand, within PGA1_c06230at 638.675 kb on + strand, within PGA1_c06230at 638.677 kb on - strand, within PGA1_c06230at 638.772 kb on - strand, within PGA1_c06230at 638.785 kb on - strand, within PGA1_c06230at 638.930 kb on + strand, within PGA1_c06230at 638.954 kb on + strand, within PGA1_c06230at 638.962 kb on - strand, within PGA1_c06230at 638.977 kb on + strand, within PGA1_c06230at 639.032 kb on + strandat 639.088 kb on - strandat 639.089 kb on + strandat 639.090 kb on - strandat 639.095 kb on - strandat 639.097 kb on - strandat 639.116 kb on - strandat 639.130 kb on - strandat 639.155 kb on + strandat 639.158 kb on - strandat 639.160 kb on + strandat 639.163 kb on + strandat 639.168 kb on - strandat 639.171 kb on + strandat 639.277 kb on + strandat 639.301 kb on + strandat 639.431 kb on - strandat 639.443 kb on + strandat 639.443 kb on + strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.479 kb on + strandat 639.515 kb on + strandat 639.516 kb on + strandat 639.516 kb on + strandat 639.551 kb on + strandat 639.624 kb on + strand, within PGA1_c06240at 639.632 kb on - strand, within PGA1_c06240at 639.632 kb on - strand, within PGA1_c06240at 639.672 kb on + strand, within PGA1_c06240at 639.732 kb on + strand, within PGA1_c06240at 639.753 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.811 kb on - strand, within PGA1_c06240at 639.868 kb on - strand, within PGA1_c06240at 639.918 kb on + strand, within PGA1_c06240at 640.038 kb on + strand, within PGA1_c06240at 640.090 kb on + strand, within PGA1_c06240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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637,881 - -0.5
637,889 - +1.1
637,891 + -2.4
637,976 + +2.5
638,069 + PGA1_c06230 0.15 +2.9
638,100 + PGA1_c06230 0.17 -1.9
638,108 - PGA1_c06230 0.18 +1.7
638,120 - PGA1_c06230 0.19 -1.2
638,197 + PGA1_c06230 0.25 +0.8
638,267 - PGA1_c06230 0.31 +3.0
638,285 - PGA1_c06230 0.32 -0.9
638,293 + PGA1_c06230 0.33 +3.0
638,301 - PGA1_c06230 0.33 +1.5
638,339 + PGA1_c06230 0.36 -0.9
638,492 + PGA1_c06230 0.49 +0.9
638,492 + PGA1_c06230 0.49 +1.9
638,531 - PGA1_c06230 0.52 -1.1
638,531 - PGA1_c06230 0.52 -0.3
638,531 - PGA1_c06230 0.52 +1.5
638,531 - PGA1_c06230 0.52 -2.7
638,569 - PGA1_c06230 0.55 -0.7
638,569 - PGA1_c06230 0.55 +0.1
638,592 + PGA1_c06230 0.57 -1.4
638,652 + PGA1_c06230 0.62 -1.5
638,675 + PGA1_c06230 0.64 -0.9
638,677 - PGA1_c06230 0.64 -0.2
638,772 - PGA1_c06230 0.71 +2.6
638,785 - PGA1_c06230 0.72 +1.4
638,930 + PGA1_c06230 0.84 -2.8
638,954 + PGA1_c06230 0.86 +0.9
638,962 - PGA1_c06230 0.87 -2.1
638,977 + PGA1_c06230 0.88 +2.1
639,032 + -2.8
639,088 - -1.9
639,089 + +3.6
639,090 - -2.1
639,095 - +0.5
639,097 - +0.3
639,116 - +1.8
639,130 - -0.7
639,155 + +0.7
639,158 - +3.8
639,160 + -2.4
639,163 + +1.2
639,168 - -2.1
639,171 + -0.7
639,277 + -2.3
639,301 + -0.9
639,431 - -2.8
639,443 + +1.3
639,443 + +0.1
639,451 - +1.8
639,451 - -1.6
639,451 - +1.0
639,451 - +0.9
639,451 - +1.7
639,479 + -0.2
639,515 + -0.5
639,516 + -1.8
639,516 + +0.5
639,551 + +0.3
639,624 + PGA1_c06240 0.13 -2.1
639,632 - PGA1_c06240 0.13 +0.1
639,632 - PGA1_c06240 0.13 -1.8
639,672 + PGA1_c06240 0.16 -0.1
639,732 + PGA1_c06240 0.20 -0.4
639,753 + PGA1_c06240 0.22 -0.5
639,790 + PGA1_c06240 0.24 -1.5
639,790 + PGA1_c06240 0.24 -0.7
639,790 + PGA1_c06240 0.24 -2.2
639,790 + PGA1_c06240 0.24 -1.8
639,790 + PGA1_c06240 0.24 -2.4
639,798 - PGA1_c06240 0.25 -1.1
639,798 - PGA1_c06240 0.25 -0.2
639,798 - PGA1_c06240 0.25 -0.5
639,798 - PGA1_c06240 0.25 -2.4
639,811 - PGA1_c06240 0.26 +0.1
639,868 - PGA1_c06240 0.30 +2.1
639,918 + PGA1_c06240 0.33 -2.1
640,038 + PGA1_c06240 0.42 -2.0
640,090 + PGA1_c06240 0.45 +0.2

Or see this region's nucleotide sequence