Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g107 and HP15_p187g108 are separated by 44 nucleotides HP15_p187g108 and HP15_p187g109 are separated by 91 nucleotides HP15_p187g109 and HP15_p187g110 overlap by 4 nucleotides
HP15_p187g107: HP15_p187g107 - conserved hypothetical protein, membrane, at 101,264 to 102,328
_p187g107
HP15_p187g108: HP15_p187g108 - conserved hypothetical protein, at 102,373 to 103,455
_p187g108
HP15_p187g109: HP15_p187g109 - conserved hypothetical protein, secreted, at 103,547 to 103,792
_p187g109
HP15_p187g110: HP15_p187g110 - conserved hypothetical protein, at 103,789 to 105,543
_p187g110
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.390 kb on - strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.432 kb on + strand, within HP15_p187g107 at 101.459 kb on + strand, within HP15_p187g107 at 101.478 kb on - strand, within HP15_p187g107 at 101.482 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.625 kb on + strand, within HP15_p187g107 at 101.633 kb on - strand, within HP15_p187g107 at 101.642 kb on + strand, within HP15_p187g107 at 101.650 kb on - strand, within HP15_p187g107 at 101.682 kb on - strand, within HP15_p187g107 at 101.689 kb on - strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.745 kb on + strand, within HP15_p187g107 at 101.834 kb on + strand, within HP15_p187g107 at 101.837 kb on - strand, within HP15_p187g107 at 101.842 kb on - strand, within HP15_p187g107 at 101.915 kb on - strand, within HP15_p187g107 at 101.960 kb on - strand, within HP15_p187g107 at 102.012 kb on - strand, within HP15_p187g107 at 102.048 kb on - strand, within HP15_p187g107 at 102.067 kb on + strand, within HP15_p187g107 at 102.070 kb on - strand, within HP15_p187g107 at 102.084 kb on + strand, within HP15_p187g107 at 102.114 kb on + strand, within HP15_p187g107 at 102.203 kb on - strand, within HP15_p187g107 at 102.213 kb on - strand, within HP15_p187g107 at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.241 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.253 kb on - strand at 102.311 kb on + strand at 102.370 kb on - strand at 102.383 kb on + strand at 102.383 kb on + strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.453 kb on - strand at 102.461 kb on + strand at 102.520 kb on - strand, within HP15_p187g108 at 102.520 kb on - strand, within HP15_p187g108 at 102.537 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.545 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.551 kb on + strand, within HP15_p187g108 at 102.582 kb on + strand, within HP15_p187g108 at 102.583 kb on - strand, within HP15_p187g108 at 102.587 kb on + strand, within HP15_p187g108 at 102.590 kb on - strand, within HP15_p187g108 at 102.592 kb on + strand, within HP15_p187g108 at 102.597 kb on - strand, within HP15_p187g108 at 102.599 kb on + strand, within HP15_p187g108 at 102.600 kb on - strand, within HP15_p187g108 at 102.602 kb on + strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.660 kb on + strand, within HP15_p187g108 at 102.704 kb on - strand, within HP15_p187g108 at 102.731 kb on + strand, within HP15_p187g108 at 102.745 kb on - strand, within HP15_p187g108 at 102.822 kb on - strand, within HP15_p187g108 at 102.835 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.858 kb on - strand, within HP15_p187g108 at 102.882 kb on - strand, within HP15_p187g108 at 102.889 kb on - strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.938 kb on - strand, within HP15_p187g108 at 102.945 kb on + strand, within HP15_p187g108 at 102.948 kb on - strand, within HP15_p187g108 at 102.960 kb on + strand, within HP15_p187g108 at 102.963 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.985 kb on + strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 103.015 kb on + strand, within HP15_p187g108 at 103.053 kb on - strand, within HP15_p187g108 at 103.090 kb on + strand, within HP15_p187g108 at 103.169 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on - strand, within HP15_p187g108 at 103.236 kb on + strand, within HP15_p187g108 at 103.237 kb on - strand, within HP15_p187g108 at 103.244 kb on + strand, within HP15_p187g108 at 103.262 kb on - strand, within HP15_p187g108 at 103.279 kb on - strand, within HP15_p187g108 at 103.299 kb on + strand, within HP15_p187g108 at 103.349 kb on - strand at 103.354 kb on - strand at 103.375 kb on - strand at 103.434 kb on + strand at 103.489 kb on - strand at 103.491 kb on + strand at 103.491 kb on + strand at 103.491 kb on + strand at 103.499 kb on - strand at 103.499 kb on - strand at 103.499 kb on - strand at 103.501 kb on + strand at 103.501 kb on + strand at 103.501 kb on + strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.529 kb on - strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.553 kb on - strand at 103.632 kb on + strand, within HP15_p187g109 at 103.632 kb on + strand, within HP15_p187g109 at 103.641 kb on - strand, within HP15_p187g109 at 103.652 kb on + strand, within HP15_p187g109 at 103.690 kb on + strand, within HP15_p187g109 at 103.711 kb on - strand, within HP15_p187g109 at 103.769 kb on - strand at 103.769 kb on - strand at 103.774 kb on + strand at 103.812 kb on + strand at 103.869 kb on + strand at 103.877 kb on - strand at 103.879 kb on + strand at 103.911 kb on - strand at 103.938 kb on - strand at 104.079 kb on - strand, within HP15_p187g110 at 104.112 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.130 kb on - strand, within HP15_p187g110 at 104.238 kb on - strand, within HP15_p187g110 at 104.340 kb on - strand, within HP15_p187g110 at 104.378 kb on + strand, within HP15_p187g110 at 104.386 kb on + strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.421 kb on + strand, within HP15_p187g110 at 104.429 kb on - strand, within HP15_p187g110 at 104.429 kb on - strand, within HP15_p187g110 at 104.451 kb on + strand, within HP15_p187g110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 101,390 - HP15_p187g107 0.12 +0.2 101,413 + HP15_p187g107 0.14 -1.8 101,413 + HP15_p187g107 0.14 +1.1 101,421 - HP15_p187g107 0.15 +1.2 101,421 - HP15_p187g107 0.15 -0.4 101,421 - HP15_p187g107 0.15 +1.9 101,432 + HP15_p187g107 0.16 +0.2 101,459 + HP15_p187g107 0.18 +0.1 101,478 - HP15_p187g107 0.20 -0.7 101,482 + HP15_p187g107 0.20 -0.4 101,610 + HP15_p187g107 0.32 -0.6 101,610 + HP15_p187g107 0.32 +0.0 101,610 + HP15_p187g107 0.32 -0.5 101,618 - HP15_p187g107 0.33 -0.5 101,618 - HP15_p187g107 0.33 +1.3 101,625 + HP15_p187g107 0.34 +1.3 101,633 - HP15_p187g107 0.35 -0.0 101,642 + HP15_p187g107 0.35 +0.7 101,650 - HP15_p187g107 0.36 -0.3 101,682 - HP15_p187g107 0.39 +0.4 101,689 - HP15_p187g107 0.40 -0.8 101,715 + HP15_p187g107 0.42 -0.4 101,715 + HP15_p187g107 0.42 -0.4 101,723 - HP15_p187g107 0.43 -0.0 101,723 - HP15_p187g107 0.43 +0.2 101,745 + HP15_p187g107 0.45 +0.2 101,834 + HP15_p187g107 0.54 +1.7 101,837 - HP15_p187g107 0.54 -0.0 101,842 - HP15_p187g107 0.54 +0.6 101,915 - HP15_p187g107 0.61 -0.3 101,960 - HP15_p187g107 0.65 -0.6 102,012 - HP15_p187g107 0.70 +0.4 102,048 - HP15_p187g107 0.74 +0.0 102,067 + HP15_p187g107 0.75 +0.1 102,070 - HP15_p187g107 0.76 +0.4 102,084 + HP15_p187g107 0.77 -0.1 102,114 + HP15_p187g107 0.80 -0.4 102,203 - HP15_p187g107 0.88 +0.3 102,213 - HP15_p187g107 0.89 +0.1 102,238 + +0.2 102,238 + -0.3 102,238 + -0.3 102,238 + -0.3 102,238 + -0.3 102,241 - +0.4 102,246 - +0.5 102,246 - -0.2 102,246 - -0.4 102,253 - +0.7 102,311 + -0.5 102,370 - +0.4 102,383 + -0.2 102,383 + +0.0 102,391 - +0.6 102,391 - +0.8 102,453 - +1.1 102,461 + -0.2 102,520 - HP15_p187g108 0.14 +0.4 102,520 - HP15_p187g108 0.14 -0.3 102,537 + HP15_p187g108 0.15 +0.8 102,542 + HP15_p187g108 0.16 +0.2 102,542 + HP15_p187g108 0.16 -0.7 102,545 - HP15_p187g108 0.16 +0.5 102,550 - HP15_p187g108 0.16 -0.0 102,550 - HP15_p187g108 0.16 +0.4 102,550 - HP15_p187g108 0.16 +0.2 102,550 - HP15_p187g108 0.16 -0.1 102,551 + HP15_p187g108 0.16 +1.8 102,582 + HP15_p187g108 0.19 +0.1 102,583 - HP15_p187g108 0.19 +1.1 102,587 + HP15_p187g108 0.20 -0.4 102,590 - HP15_p187g108 0.20 +0.7 102,592 + HP15_p187g108 0.20 +1.2 102,597 - HP15_p187g108 0.21 +0.8 102,599 + HP15_p187g108 0.21 -0.3 102,600 - HP15_p187g108 0.21 -0.1 102,602 + HP15_p187g108 0.21 +0.6 102,602 - HP15_p187g108 0.21 -0.2 102,602 - HP15_p187g108 0.21 +0.6 102,641 - HP15_p187g108 0.25 +0.2 102,641 - HP15_p187g108 0.25 +0.2 102,660 + HP15_p187g108 0.27 +0.1 102,704 - HP15_p187g108 0.31 +0.0 102,731 + HP15_p187g108 0.33 -0.6 102,745 - HP15_p187g108 0.34 -0.4 102,822 - HP15_p187g108 0.41 -0.2 102,835 - HP15_p187g108 0.43 +0.1 102,837 - HP15_p187g108 0.43 +0.6 102,837 - HP15_p187g108 0.43 -0.2 102,858 - HP15_p187g108 0.45 -0.5 102,882 - HP15_p187g108 0.47 +1.1 102,889 - HP15_p187g108 0.48 +0.2 102,920 + HP15_p187g108 0.51 +0.3 102,920 + HP15_p187g108 0.51 +0.3 102,920 + HP15_p187g108 0.51 -1.0 102,928 - HP15_p187g108 0.51 +1.5 102,928 - HP15_p187g108 0.51 +0.9 102,938 - HP15_p187g108 0.52 -0.4 102,945 + HP15_p187g108 0.53 +0.6 102,948 - HP15_p187g108 0.53 -0.4 102,960 + HP15_p187g108 0.54 -0.5 102,963 - HP15_p187g108 0.54 +0.3 102,968 - HP15_p187g108 0.55 +0.4 102,968 - HP15_p187g108 0.55 +0.2 102,980 + HP15_p187g108 0.56 +0.4 102,980 + HP15_p187g108 0.56 -0.7 102,985 + HP15_p187g108 0.57 +0.1 102,993 - HP15_p187g108 0.57 -0.9 102,993 - HP15_p187g108 0.57 +0.5 103,015 + HP15_p187g108 0.59 +0.3 103,053 - HP15_p187g108 0.63 -0.0 103,090 + HP15_p187g108 0.66 +0.7 103,169 + HP15_p187g108 0.73 +0.9 103,177 + HP15_p187g108 0.74 +0.1 103,177 + HP15_p187g108 0.74 -0.1 103,177 + HP15_p187g108 0.74 -0.2 103,177 - HP15_p187g108 0.74 +1.0 103,236 + HP15_p187g108 0.80 +0.3 103,237 - HP15_p187g108 0.80 -0.0 103,244 + HP15_p187g108 0.80 +0.5 103,262 - HP15_p187g108 0.82 -0.2 103,279 - HP15_p187g108 0.84 +0.3 103,299 + HP15_p187g108 0.86 +0.3 103,349 - -0.2 103,354 - -0.3 103,375 - +0.2 103,434 + -0.1 103,489 - -0.4 103,491 + -0.6 103,491 + +0.3 103,491 + -0.4 103,499 - -0.1 103,499 - -0.1 103,499 - +0.3 103,501 + +1.0 103,501 + +0.3 103,501 + -0.8 103,509 - +0.4 103,509 - -0.5 103,509 - -0.1 103,509 - +0.2 103,529 - -0.2 103,545 + -0.1 103,545 + +0.8 103,545 + -0.2 103,545 + +0.2 103,553 - -0.4 103,632 + HP15_p187g109 0.35 -0.6 103,632 + HP15_p187g109 0.35 -0.2 103,641 - HP15_p187g109 0.38 +0.5 103,652 + HP15_p187g109 0.43 +0.6 103,690 + HP15_p187g109 0.58 -0.9 103,711 - HP15_p187g109 0.67 -0.0 103,769 - +0.4 103,769 - +0.4 103,774 + +0.7 103,812 + +0.1 103,869 + +0.0 103,877 - +0.8 103,879 + -0.5 103,911 - -0.0 103,938 - +1.1 104,079 - HP15_p187g110 0.17 +0.9 104,112 + HP15_p187g110 0.18 +0.0 104,122 + HP15_p187g110 0.19 +0.4 104,122 + HP15_p187g110 0.19 +0.1 104,122 + HP15_p187g110 0.19 -0.3 104,130 - HP15_p187g110 0.19 -0.2 104,238 - HP15_p187g110 0.26 -0.7 104,340 - HP15_p187g110 0.31 +0.3 104,378 + HP15_p187g110 0.34 -0.1 104,386 + HP15_p187g110 0.34 -0.2 104,394 - HP15_p187g110 0.34 -0.8 104,394 - HP15_p187g110 0.34 -0.6 104,394 - HP15_p187g110 0.34 +0.2 104,421 + HP15_p187g110 0.36 -0.4 104,429 - HP15_p187g110 0.36 -0.4 104,429 - HP15_p187g110 0.36 +0.1 104,451 + HP15_p187g110 0.38 +0.3
Or see this region's nucleotide sequence