Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04490 and PGA1_c04500 are separated by 94 nucleotides PGA1_c04500 and PGA1_c04510 are separated by 47 nucleotides PGA1_c04510 and PGA1_c04520 are separated by 294 nucleotides
PGA1_c04490: PGA1_c04490 - indolepyruvate oxidoreductase, at 437,639 to 441,061
_c04490
PGA1_c04500: PGA1_c04500 - transcriptional regulator, AsnC family, at 441,156 to 441,671
_c04500
PGA1_c04510: PGA1_c04510 - Protein of unknown function (DUF3307)., at 441,719 to 442,111
_c04510
PGA1_c04520: PGA1_c04520 - putative ABC transporter cyclic nucleotide-binding protein, at 442,406 to 445,363
_c04520
Position (kb) 441
442
443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 440.739 kb on - strand at 440.758 kb on - strand at 440.773 kb on + strand at 440.776 kb on - strand at 440.784 kb on + strand at 440.786 kb on + strand at 440.791 kb on + strand at 440.791 kb on + strand at 440.896 kb on - strand at 440.915 kb on + strand at 440.952 kb on + strand at 440.968 kb on + strand at 440.971 kb on + strand at 440.976 kb on - strand at 440.990 kb on + strand at 441.033 kb on - strand at 441.040 kb on + strand at 441.178 kb on - strand at 441.241 kb on + strand, within PGA1_c04500 at 441.241 kb on + strand, within PGA1_c04500 at 441.247 kb on + strand, within PGA1_c04500 at 441.249 kb on - strand, within PGA1_c04500 at 441.249 kb on - strand, within PGA1_c04500 at 441.282 kb on + strand, within PGA1_c04500 at 441.282 kb on + strand, within PGA1_c04500 at 441.290 kb on - strand, within PGA1_c04500 at 441.317 kb on - strand, within PGA1_c04500 at 441.329 kb on + strand, within PGA1_c04500 at 441.337 kb on + strand, within PGA1_c04500 at 441.337 kb on + strand, within PGA1_c04500 at 441.345 kb on - strand, within PGA1_c04500 at 441.370 kb on - strand, within PGA1_c04500 at 441.389 kb on + strand, within PGA1_c04500 at 441.390 kb on - strand, within PGA1_c04500 at 441.397 kb on - strand, within PGA1_c04500 at 441.430 kb on - strand, within PGA1_c04500 at 441.453 kb on - strand, within PGA1_c04500 at 441.459 kb on + strand, within PGA1_c04500 at 441.467 kb on - strand, within PGA1_c04500 at 441.467 kb on - strand, within PGA1_c04500 at 441.469 kb on + strand, within PGA1_c04500 at 441.469 kb on + strand, within PGA1_c04500 at 441.474 kb on + strand, within PGA1_c04500 at 441.477 kb on - strand, within PGA1_c04500 at 441.479 kb on + strand, within PGA1_c04500 at 441.519 kb on - strand, within PGA1_c04500 at 441.519 kb on - strand, within PGA1_c04500 at 441.533 kb on - strand, within PGA1_c04500 at 441.534 kb on - strand, within PGA1_c04500 at 441.534 kb on - strand, within PGA1_c04500 at 441.552 kb on + strand, within PGA1_c04500 at 441.606 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.616 kb on - strand, within PGA1_c04500 at 441.620 kb on + strand at 441.633 kb on - strand at 441.648 kb on - strand at 441.650 kb on - strand at 441.655 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.674 kb on - strand at 441.705 kb on - strand at 441.705 kb on - strand at 441.707 kb on + strand at 441.707 kb on + strand at 441.707 kb on + strand at 441.718 kb on - strand at 441.764 kb on + strand, within PGA1_c04510 at 441.779 kb on + strand, within PGA1_c04510 at 441.787 kb on - strand, within PGA1_c04510 at 441.787 kb on - strand, within PGA1_c04510 at 441.796 kb on + strand, within PGA1_c04510 at 441.801 kb on + strand, within PGA1_c04510 at 441.803 kb on + strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.813 kb on + strand, within PGA1_c04510 at 441.813 kb on + strand, within PGA1_c04510 at 441.821 kb on - strand, within PGA1_c04510 at 441.821 kb on - strand, within PGA1_c04510 at 441.826 kb on - strand, within PGA1_c04510 at 441.853 kb on - strand, within PGA1_c04510 at 441.877 kb on + strand, within PGA1_c04510 at 441.882 kb on + strand, within PGA1_c04510 at 441.882 kb on + strand, within PGA1_c04510 at 441.884 kb on + strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.892 kb on - strand, within PGA1_c04510 at 441.893 kb on - strand, within PGA1_c04510 at 441.920 kb on - strand, within PGA1_c04510 at 441.935 kb on - strand, within PGA1_c04510 at 441.969 kb on - strand, within PGA1_c04510 at 441.969 kb on - strand, within PGA1_c04510 at 441.977 kb on - strand, within PGA1_c04510 at 441.977 kb on - strand, within PGA1_c04510 at 442.062 kb on + strand, within PGA1_c04510 at 442.070 kb on - strand, within PGA1_c04510 at 442.074 kb on - strand at 442.074 kb on - strand at 442.074 kb on - strand at 442.084 kb on - strand at 442.093 kb on - strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.110 kb on - strand at 442.169 kb on + strand at 442.177 kb on + strand at 442.177 kb on - strand at 442.177 kb on - strand at 442.185 kb on - strand at 442.185 kb on - strand at 442.205 kb on + strand at 442.220 kb on + strand at 442.227 kb on - strand at 442.311 kb on + strand at 442.350 kb on + strand at 442.350 kb on + strand at 442.384 kb on + strand at 442.409 kb on + strand at 442.425 kb on - strand at 442.455 kb on + strand at 442.455 kb on - strand at 442.457 kb on - strand at 442.472 kb on - strand at 442.509 kb on + strand at 442.509 kb on + strand at 442.509 kb on + strand at 442.517 kb on - strand at 442.524 kb on + strand at 442.527 kb on - strand at 442.527 kb on - strand at 442.532 kb on - strand at 442.548 kb on + strand at 442.551 kb on - strand at 442.551 kb on - strand at 442.672 kb on + strand at 442.719 kb on + strand, within PGA1_c04520 at 442.723 kb on + strand, within PGA1_c04520 at 442.723 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.816 kb on + strand, within PGA1_c04520 at 442.816 kb on + strand, within PGA1_c04520 at 442.819 kb on - strand, within PGA1_c04520 at 442.824 kb on - strand, within PGA1_c04520 at 442.894 kb on + strand, within PGA1_c04520 at 442.902 kb on - strand, within PGA1_c04520 at 442.923 kb on + strand, within PGA1_c04520 at 442.999 kb on + strand, within PGA1_c04520 at 443.032 kb on + strand, within PGA1_c04520 at 443.055 kb on - strand, within PGA1_c04520 at 443.068 kb on + strand, within PGA1_c04520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 440,739 - +0.3 440,758 - -3.0 440,773 + -1.0 440,776 - -3.0 440,784 + +0.3 440,786 + +1.8 440,791 + +1.4 440,791 + +0.1 440,896 - -3.4 440,915 + -1.9 440,952 + -2.5 440,968 + -2.5 440,971 + +1.3 440,976 - +0.5 440,990 + -1.4 441,033 - +1.2 441,040 + +1.4 441,178 - +1.3 441,241 + PGA1_c04500 0.16 +0.1 441,241 + PGA1_c04500 0.16 +0.9 441,247 + PGA1_c04500 0.18 +1.3 441,249 - PGA1_c04500 0.18 +2.1 441,249 - PGA1_c04500 0.18 +0.3 441,282 + PGA1_c04500 0.24 -0.5 441,282 + PGA1_c04500 0.24 +1.7 441,290 - PGA1_c04500 0.26 +1.7 441,317 - PGA1_c04500 0.31 +2.2 441,329 + PGA1_c04500 0.34 +1.6 441,337 + PGA1_c04500 0.35 -2.2 441,337 + PGA1_c04500 0.35 -0.6 441,345 - PGA1_c04500 0.37 -0.8 441,370 - PGA1_c04500 0.41 +0.5 441,389 + PGA1_c04500 0.45 -1.2 441,390 - PGA1_c04500 0.45 -2.7 441,397 - PGA1_c04500 0.47 +1.3 441,430 - PGA1_c04500 0.53 -0.6 441,453 - PGA1_c04500 0.58 -2.0 441,459 + PGA1_c04500 0.59 -1.9 441,467 - PGA1_c04500 0.60 +1.0 441,467 - PGA1_c04500 0.60 +1.7 441,469 + PGA1_c04500 0.61 +1.1 441,469 + PGA1_c04500 0.61 +1.6 441,474 + PGA1_c04500 0.62 -1.0 441,477 - PGA1_c04500 0.62 -1.2 441,479 + PGA1_c04500 0.63 -1.2 441,519 - PGA1_c04500 0.70 -1.4 441,519 - PGA1_c04500 0.70 +2.4 441,533 - PGA1_c04500 0.73 +1.3 441,534 - PGA1_c04500 0.73 +0.4 441,534 - PGA1_c04500 0.73 +1.8 441,552 + PGA1_c04500 0.77 +2.1 441,606 - PGA1_c04500 0.87 +1.3 441,611 - PGA1_c04500 0.88 +0.8 441,611 - PGA1_c04500 0.88 +0.6 441,611 - PGA1_c04500 0.88 -0.9 441,611 - PGA1_c04500 0.88 +1.5 441,611 - PGA1_c04500 0.88 -1.9 441,611 - PGA1_c04500 0.88 +0.8 441,616 - PGA1_c04500 0.89 +1.3 441,620 + +1.8 441,633 - -1.5 441,648 - +2.1 441,650 - +0.4 441,655 + -1.5 441,666 + -1.2 441,666 + -0.3 441,666 + +0.0 441,666 + -2.9 441,674 - +1.5 441,705 - -2.0 441,705 - -0.6 441,707 + +3.4 441,707 + +1.2 441,707 + +1.7 441,718 - +1.3 441,764 + PGA1_c04510 0.11 +1.6 441,779 + PGA1_c04510 0.15 +2.4 441,787 - PGA1_c04510 0.17 +1.0 441,787 - PGA1_c04510 0.17 -1.7 441,796 + PGA1_c04510 0.20 -2.0 441,801 + PGA1_c04510 0.21 -2.6 441,803 + PGA1_c04510 0.21 -2.2 441,811 - PGA1_c04510 0.23 -1.1 441,811 - PGA1_c04510 0.23 +0.6 441,811 - PGA1_c04510 0.23 -2.2 441,811 - PGA1_c04510 0.23 -0.7 441,811 - PGA1_c04510 0.23 +2.4 441,813 + PGA1_c04510 0.24 -0.4 441,813 + PGA1_c04510 0.24 +2.3 441,821 - PGA1_c04510 0.26 +1.8 441,821 - PGA1_c04510 0.26 -3.0 441,826 - PGA1_c04510 0.27 +1.8 441,853 - PGA1_c04510 0.34 -2.2 441,877 + PGA1_c04510 0.40 -2.0 441,882 + PGA1_c04510 0.41 +1.4 441,882 + PGA1_c04510 0.41 -0.3 441,884 + PGA1_c04510 0.42 -0.4 441,890 - PGA1_c04510 0.44 -0.1 441,890 - PGA1_c04510 0.44 -3.4 441,890 - PGA1_c04510 0.44 -1.4 441,892 - PGA1_c04510 0.44 +2.3 441,893 - PGA1_c04510 0.44 +0.1 441,920 - PGA1_c04510 0.51 +1.3 441,935 - PGA1_c04510 0.55 -2.5 441,969 - PGA1_c04510 0.64 -1.4 441,969 - PGA1_c04510 0.64 +0.1 441,977 - PGA1_c04510 0.66 +1.8 441,977 - PGA1_c04510 0.66 -2.1 442,062 + PGA1_c04510 0.87 +1.8 442,070 - PGA1_c04510 0.89 +1.1 442,074 - +1.4 442,074 - +3.0 442,074 - -0.8 442,084 - +3.0 442,093 - +2.3 442,102 + +3.0 442,102 + +1.4 442,102 + +0.3 442,102 + +1.4 442,102 + -0.1 442,102 + +4.2 442,110 - -0.8 442,169 + +0.6 442,177 + +2.1 442,177 - -3.5 442,177 - +1.2 442,185 - -0.3 442,185 - +1.6 442,205 + +1.2 442,220 + -2.5 442,227 - +0.2 442,311 + +0.5 442,350 + -2.3 442,350 + -0.6 442,384 + -0.7 442,409 + +1.7 442,425 - -1.8 442,455 + +0.4 442,455 - -2.2 442,457 - -0.1 442,472 - -2.3 442,509 + -1.1 442,509 + +0.1 442,509 + -0.4 442,517 - -0.8 442,524 + -3.9 442,527 - -2.0 442,527 - -1.5 442,532 - -2.1 442,548 + -3.0 442,551 - +0.2 442,551 - -2.3 442,672 + -2.0 442,719 + PGA1_c04520 0.11 -0.0 442,723 + PGA1_c04520 0.11 +2.6 442,723 + PGA1_c04520 0.11 -1.1 442,811 + PGA1_c04520 0.14 +0.4 442,811 + PGA1_c04520 0.14 +0.4 442,811 + PGA1_c04520 0.14 +0.2 442,816 + PGA1_c04520 0.14 +0.6 442,816 + PGA1_c04520 0.14 +0.6 442,819 - PGA1_c04520 0.14 -2.4 442,824 - PGA1_c04520 0.14 +1.6 442,894 + PGA1_c04520 0.16 -0.1 442,902 - PGA1_c04520 0.17 -1.4 442,923 + PGA1_c04520 0.17 +1.0 442,999 + PGA1_c04520 0.20 -2.9 443,032 + PGA1_c04520 0.21 -2.4 443,055 - PGA1_c04520 0.22 +1.5 443,068 + PGA1_c04520 0.22 -0.7
Or see this region's nucleotide sequence