Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04390 and PGA1_c04400 are separated by 415 nucleotides PGA1_c04400 and PGA1_c04410 are separated by 4 nucleotides
PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206
_c04390
PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991
_c04400
PGA1_c04410: PGA1_c04410 - Predicted acyl-CoA transferases/carnitine dehydratase, at 427,996 to 429,372
_c04410
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 424.629 kb on - strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.779 kb on + strand, within PGA1_c04390 at 424.821 kb on - strand, within PGA1_c04390 at 424.891 kb on + strand, within PGA1_c04390 at 424.899 kb on + strand, within PGA1_c04390 at 424.912 kb on - strand, within PGA1_c04390 at 424.963 kb on + strand, within PGA1_c04390 at 425.044 kb on + strand, within PGA1_c04390 at 425.055 kb on + strand, within PGA1_c04390 at 425.063 kb on - strand, within PGA1_c04390 at 425.143 kb on - strand at 425.189 kb on - strand at 425.334 kb on + strand at 425.347 kb on + strand at 425.348 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.362 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand at 425.395 kb on - strand at 425.439 kb on + strand at 425.447 kb on - strand at 425.447 kb on - strand at 425.448 kb on - strand at 425.469 kb on - strand at 425.513 kb on + strand at 425.513 kb on + strand at 425.521 kb on - strand at 425.534 kb on + strand at 425.542 kb on - strand at 425.608 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.699 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.716 kb on - strand at 425.765 kb on + strand at 425.797 kb on + strand at 425.829 kb on - strand at 425.840 kb on + strand at 425.853 kb on - strand at 425.891 kb on - strand, within PGA1_c04400 at 425.899 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.907 kb on - strand, within PGA1_c04400 at 425.912 kb on - strand, within PGA1_c04400 at 425.917 kb on - strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.967 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.029 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.082 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.104 kb on - strand, within PGA1_c04400 at 426.120 kb on + strand, within PGA1_c04400 at 426.127 kb on + strand, within PGA1_c04400 at 426.128 kb on + strand, within PGA1_c04400 at 426.128 kb on - strand, within PGA1_c04400 at 426.162 kb on + strand, within PGA1_c04400 at 426.201 kb on + strand, within PGA1_c04400 at 426.212 kb on + strand, within PGA1_c04400 at 426.213 kb on + strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.221 kb on - strand, within PGA1_c04400 at 426.235 kb on - strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.258 kb on - strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.318 kb on + strand, within PGA1_c04400 at 426.326 kb on - strand, within PGA1_c04400 at 426.326 kb on - strand, within PGA1_c04400 at 426.327 kb on - strand, within PGA1_c04400 at 426.337 kb on - strand, within PGA1_c04400 at 426.353 kb on - strand, within PGA1_c04400 at 426.375 kb on - strand, within PGA1_c04400 at 426.375 kb on - strand, within PGA1_c04400 at 426.378 kb on + strand, within PGA1_c04400 at 426.381 kb on - strand, within PGA1_c04400 at 426.429 kb on - strand, within PGA1_c04400 at 426.463 kb on + strand, within PGA1_c04400 at 426.473 kb on + strand, within PGA1_c04400 at 426.512 kb on + strand, within PGA1_c04400 at 426.545 kb on + strand, within PGA1_c04400 at 426.545 kb on + strand, within PGA1_c04400 at 426.553 kb on - strand, within PGA1_c04400 at 426.624 kb on + strand, within PGA1_c04400 at 426.642 kb on - strand, within PGA1_c04400 at 426.716 kb on - strand, within PGA1_c04400 at 426.774 kb on + strand, within PGA1_c04400 at 426.774 kb on + strand, within PGA1_c04400 at 426.803 kb on - strand, within PGA1_c04400 at 426.812 kb on - strand, within PGA1_c04400 at 426.859 kb on - strand, within PGA1_c04400 at 426.984 kb on - strand, within PGA1_c04400 at 426.994 kb on - strand, within PGA1_c04400 at 426.996 kb on + strand, within PGA1_c04400 at 427.028 kb on - strand, within PGA1_c04400 at 427.052 kb on + strand, within PGA1_c04400 at 427.062 kb on + strand, within PGA1_c04400 at 427.079 kb on - strand, within PGA1_c04400 at 427.099 kb on - strand, within PGA1_c04400 at 427.132 kb on - strand, within PGA1_c04400 at 427.190 kb on + strand, within PGA1_c04400 at 427.208 kb on - strand, within PGA1_c04400 at 427.208 kb on - strand, within PGA1_c04400 at 427.222 kb on - strand, within PGA1_c04400 at 427.248 kb on + strand, within PGA1_c04400 at 427.278 kb on - strand, within PGA1_c04400 at 427.306 kb on + strand, within PGA1_c04400 at 427.452 kb on + strand, within PGA1_c04400 at 427.459 kb on - strand, within PGA1_c04400 at 427.486 kb on + strand, within PGA1_c04400 at 427.494 kb on - strand, within PGA1_c04400 at 427.520 kb on - strand, within PGA1_c04400 at 427.696 kb on - strand, within PGA1_c04400 at 427.703 kb on + strand, within PGA1_c04400 at 427.827 kb on + strand at 427.840 kb on + strand at 427.857 kb on - strand at 427.877 kb on + strand at 427.877 kb on + strand at 427.941 kb on + strand at 427.950 kb on + strand at 427.958 kb on - strand at 427.992 kb on + strand at 427.992 kb on + strand at 428.000 kb on - strand at 428.008 kb on + strand at 428.168 kb on + strand, within PGA1_c04410 at 428.208 kb on + strand, within PGA1_c04410 at 428.219 kb on + strand, within PGA1_c04410 at 428.224 kb on + strand, within PGA1_c04410 at 428.237 kb on - strand, within PGA1_c04410 at 428.262 kb on + strand, within PGA1_c04410 at 428.267 kb on + strand, within PGA1_c04410 at 428.279 kb on + strand, within PGA1_c04410 at 428.279 kb on + strand, within PGA1_c04410 at 428.287 kb on - strand, within PGA1_c04410 at 428.289 kb on - strand, within PGA1_c04410 at 428.366 kb on + strand, within PGA1_c04410 at 428.374 kb on - strand, within PGA1_c04410 at 428.387 kb on + strand, within PGA1_c04410 at 428.395 kb on - strand, within PGA1_c04410 at 428.427 kb on + strand, within PGA1_c04410 at 428.430 kb on - strand, within PGA1_c04410 at 428.445 kb on - strand, within PGA1_c04410 at 428.472 kb on + strand, within PGA1_c04410 at 428.516 kb on - strand, within PGA1_c04410 at 428.523 kb on + strand, within PGA1_c04410 at 428.570 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.622 kb on + strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.630 kb on - strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.638 kb on - strand, within PGA1_c04410 at 428.645 kb on - strand, within PGA1_c04410 at 428.682 kb on + strand, within PGA1_c04410 at 428.750 kb on - strand, within PGA1_c04410 at 428.776 kb on + strand, within PGA1_c04410 at 428.798 kb on - strand, within PGA1_c04410 at 428.855 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.929 kb on + strand, within PGA1_c04410 at 428.932 kb on + strand, within PGA1_c04410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 424,629 - PGA1_c04390 0.52 -2.5 424,629 - PGA1_c04390 0.52 -1.8 424,779 + PGA1_c04390 0.65 -2.3 424,821 - PGA1_c04390 0.68 -0.8 424,891 + PGA1_c04390 0.74 -0.6 424,899 + PGA1_c04390 0.75 -1.3 424,912 - PGA1_c04390 0.76 -2.6 424,963 + PGA1_c04390 0.80 -0.4 425,044 + PGA1_c04390 0.87 +2.0 425,055 + PGA1_c04390 0.87 -1.9 425,063 - PGA1_c04390 0.88 -2.6 425,143 - -0.4 425,189 - -1.1 425,334 + -1.0 425,347 + -2.1 425,348 - -2.3 425,360 - +1.6 425,360 - +0.6 425,360 - +0.8 425,362 + -0.1 425,377 + -0.8 425,377 + +3.3 425,377 + -2.1 425,377 + -1.0 425,377 + +0.8 425,385 - -0.6 425,385 - -0.7 425,395 - -0.5 425,439 + -2.1 425,447 - +1.1 425,447 - -1.9 425,448 - -2.6 425,469 - +0.2 425,513 + -1.7 425,513 + +2.2 425,521 - -1.8 425,534 + +0.3 425,542 - -1.6 425,608 + -2.2 425,698 + -0.3 425,698 + -1.6 425,699 - -0.5 425,706 - +3.2 425,706 - +0.3 425,716 - -0.7 425,765 + -2.7 425,797 + -0.6 425,829 - +1.8 425,840 + -0.1 425,853 - -3.4 425,891 - PGA1_c04400 0.11 -2.4 425,899 + PGA1_c04400 0.12 +1.1 425,904 + PGA1_c04400 0.12 -1.6 425,904 + PGA1_c04400 0.12 -1.8 425,904 + PGA1_c04400 0.12 -1.6 425,907 - PGA1_c04400 0.12 -1.3 425,912 - PGA1_c04400 0.12 -3.3 425,917 - PGA1_c04400 0.12 -3.4 425,936 + PGA1_c04400 0.13 +2.2 425,936 + PGA1_c04400 0.13 -0.5 425,946 + PGA1_c04400 0.14 +0.7 425,946 + PGA1_c04400 0.14 +0.4 425,946 + PGA1_c04400 0.14 +2.3 425,954 - PGA1_c04400 0.14 -0.1 425,954 - PGA1_c04400 0.14 +0.6 425,954 - PGA1_c04400 0.14 -2.3 425,967 - PGA1_c04400 0.15 -1.8 425,999 - PGA1_c04400 0.16 +2.2 425,999 - PGA1_c04400 0.16 -0.6 426,019 - PGA1_c04400 0.17 +1.3 426,019 - PGA1_c04400 0.17 +1.7 426,024 - PGA1_c04400 0.17 -1.3 426,024 - PGA1_c04400 0.17 +0.4 426,029 + PGA1_c04400 0.17 -2.2 426,040 + PGA1_c04400 0.18 -2.3 426,040 + PGA1_c04400 0.18 -0.1 426,040 + PGA1_c04400 0.18 -2.6 426,040 + PGA1_c04400 0.18 +2.2 426,040 + PGA1_c04400 0.18 -1.0 426,040 + PGA1_c04400 0.18 -0.6 426,048 - PGA1_c04400 0.18 +1.7 426,048 - PGA1_c04400 0.18 -2.2 426,082 + PGA1_c04400 0.19 +2.2 426,096 + PGA1_c04400 0.20 -2.4 426,096 + PGA1_c04400 0.20 -0.8 426,096 + PGA1_c04400 0.20 +0.9 426,104 - PGA1_c04400 0.20 +2.2 426,120 + PGA1_c04400 0.21 -3.2 426,127 + PGA1_c04400 0.21 -1.1 426,128 + PGA1_c04400 0.21 +2.9 426,128 - PGA1_c04400 0.21 +0.6 426,162 + PGA1_c04400 0.23 -1.3 426,201 + PGA1_c04400 0.24 +1.9 426,212 + PGA1_c04400 0.25 +0.1 426,213 + PGA1_c04400 0.25 +0.9 426,220 - PGA1_c04400 0.25 +0.4 426,220 - PGA1_c04400 0.25 +2.9 426,220 - PGA1_c04400 0.25 +0.7 426,221 - PGA1_c04400 0.25 -2.2 426,235 - PGA1_c04400 0.26 -1.1 426,245 + PGA1_c04400 0.26 +2.1 426,245 + PGA1_c04400 0.26 -1.8 426,245 + PGA1_c04400 0.26 +1.0 426,245 + PGA1_c04400 0.26 -1.6 426,245 + PGA1_c04400 0.26 +1.6 426,253 - PGA1_c04400 0.27 +0.1 426,253 - PGA1_c04400 0.27 -1.8 426,253 - PGA1_c04400 0.27 -0.8 426,253 - PGA1_c04400 0.27 +0.5 426,253 - PGA1_c04400 0.27 +1.1 426,258 - PGA1_c04400 0.27 -1.7 426,308 + PGA1_c04400 0.29 -2.5 426,308 + PGA1_c04400 0.29 -0.6 426,308 + PGA1_c04400 0.29 -2.4 426,318 + PGA1_c04400 0.29 -0.8 426,326 - PGA1_c04400 0.30 +0.6 426,326 - PGA1_c04400 0.30 +2.0 426,327 - PGA1_c04400 0.30 -1.3 426,337 - PGA1_c04400 0.30 -2.9 426,353 - PGA1_c04400 0.31 -2.0 426,375 - PGA1_c04400 0.32 +0.7 426,375 - PGA1_c04400 0.32 -1.9 426,378 + PGA1_c04400 0.32 +1.3 426,381 - PGA1_c04400 0.32 -0.7 426,429 - PGA1_c04400 0.34 -1.0 426,463 + PGA1_c04400 0.35 +1.1 426,473 + PGA1_c04400 0.36 -2.3 426,512 + PGA1_c04400 0.38 +1.8 426,545 + PGA1_c04400 0.39 +1.7 426,545 + PGA1_c04400 0.39 -2.7 426,553 - PGA1_c04400 0.39 -2.3 426,624 + PGA1_c04400 0.42 +1.0 426,642 - PGA1_c04400 0.43 +2.7 426,716 - PGA1_c04400 0.46 +1.7 426,774 + PGA1_c04400 0.49 -1.4 426,774 + PGA1_c04400 0.49 +0.1 426,803 - PGA1_c04400 0.50 -3.5 426,812 - PGA1_c04400 0.50 -1.8 426,859 - PGA1_c04400 0.52 +2.2 426,984 - PGA1_c04400 0.57 -2.0 426,994 - PGA1_c04400 0.58 -2.0 426,996 + PGA1_c04400 0.58 +1.5 427,028 - PGA1_c04400 0.59 +0.2 427,052 + PGA1_c04400 0.60 +0.7 427,062 + PGA1_c04400 0.61 -1.1 427,079 - PGA1_c04400 0.61 -1.6 427,099 - PGA1_c04400 0.62 -2.5 427,132 - PGA1_c04400 0.64 -1.0 427,190 + PGA1_c04400 0.66 -0.2 427,208 - PGA1_c04400 0.67 -1.0 427,208 - PGA1_c04400 0.67 -0.8 427,222 - PGA1_c04400 0.68 +1.6 427,248 + PGA1_c04400 0.69 +0.9 427,278 - PGA1_c04400 0.70 -1.9 427,306 + PGA1_c04400 0.71 -1.8 427,452 + PGA1_c04400 0.77 -0.1 427,459 - PGA1_c04400 0.78 -1.4 427,486 + PGA1_c04400 0.79 -0.6 427,494 - PGA1_c04400 0.79 +0.5 427,520 - PGA1_c04400 0.80 -2.3 427,696 - PGA1_c04400 0.88 -0.8 427,703 + PGA1_c04400 0.88 -0.8 427,827 + -1.8 427,840 + +2.5 427,857 - -3.2 427,877 + +2.0 427,877 + +1.8 427,941 + +3.5 427,950 + -1.8 427,958 - +1.6 427,992 + -0.1 427,992 + -0.1 428,000 - +1.1 428,008 + +0.8 428,168 + PGA1_c04410 0.12 -2.0 428,208 + PGA1_c04410 0.15 +1.1 428,219 + PGA1_c04410 0.16 -2.3 428,224 + PGA1_c04410 0.17 -0.4 428,237 - PGA1_c04410 0.18 -2.0 428,262 + PGA1_c04410 0.19 +2.2 428,267 + PGA1_c04410 0.20 -0.6 428,279 + PGA1_c04410 0.21 -2.1 428,279 + PGA1_c04410 0.21 +0.3 428,287 - PGA1_c04410 0.21 -0.1 428,289 - PGA1_c04410 0.21 +3.7 428,366 + PGA1_c04410 0.27 -2.3 428,374 - PGA1_c04410 0.27 +1.5 428,387 + PGA1_c04410 0.28 -1.9 428,395 - PGA1_c04410 0.29 +2.0 428,427 + PGA1_c04410 0.31 +1.6 428,430 - PGA1_c04410 0.32 -1.4 428,445 - PGA1_c04410 0.33 -2.3 428,472 + PGA1_c04410 0.35 -0.2 428,516 - PGA1_c04410 0.38 -0.5 428,523 + PGA1_c04410 0.38 +2.1 428,570 - PGA1_c04410 0.42 -1.1 428,611 - PGA1_c04410 0.45 -1.8 428,611 - PGA1_c04410 0.45 -1.1 428,613 + PGA1_c04410 0.45 -1.9 428,613 + PGA1_c04410 0.45 +2.2 428,620 + PGA1_c04410 0.45 -2.4 428,620 + PGA1_c04410 0.45 +1.1 428,622 + PGA1_c04410 0.45 -1.7 428,628 - PGA1_c04410 0.46 +1.5 428,628 - PGA1_c04410 0.46 -2.8 428,630 - PGA1_c04410 0.46 -0.4 428,637 + PGA1_c04410 0.47 -2.0 428,637 + PGA1_c04410 0.47 -2.3 428,637 + PGA1_c04410 0.47 -1.7 428,638 - PGA1_c04410 0.47 +1.2 428,645 - PGA1_c04410 0.47 +1.2 428,682 + PGA1_c04410 0.50 -2.2 428,750 - PGA1_c04410 0.55 +2.6 428,776 + PGA1_c04410 0.57 +1.1 428,798 - PGA1_c04410 0.58 -2.7 428,855 + PGA1_c04410 0.62 -0.9 428,891 + PGA1_c04410 0.65 +0.7 428,891 + PGA1_c04410 0.65 -0.8 428,899 - PGA1_c04410 0.66 -2.8 428,899 - PGA1_c04410 0.66 +1.5 428,929 + PGA1_c04410 0.68 -1.0 428,932 + PGA1_c04410 0.68 -2.0
Or see this region's nucleotide sequence