Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00280

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotidesPGA1_262p00270 and PGA1_262p00280 are separated by 93 nucleotidesPGA1_262p00280 and PGA1_262p00290 are separated by 200 nucleotidesPGA1_262p00290 and PGA1_262p00300 are separated by 148 nucleotides PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510 _262p00260 PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334 _262p00270 PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453 _262p00280 PGA1_262p00290: PGA1_262p00290 - putative transcriptional regulator, at 32,654 to 33,265 _262p00290 PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000 _262p00300 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 30.493 kb on + strandat 30.589 kb on + strandat 30.597 kb on - strandat 30.597 kb on - strandat 30.657 kb on + strandat 30.703 kb on + strandat 30.822 kb on + strand, within PGA1_262p00270at 30.989 kb on + strand, within PGA1_262p00270at 31.150 kb on - strand, within PGA1_262p00270at 31.175 kb on - strand, within PGA1_262p00270at 31.200 kb on + strand, within PGA1_262p00270at 31.248 kb on - strand, within PGA1_262p00270at 31.340 kb on + strandat 31.388 kb on + strandat 31.393 kb on + strandat 31.491 kb on + strandat 31.620 kb on + strand, within PGA1_262p00280at 31.620 kb on + strand, within PGA1_262p00280at 31.643 kb on - strand, within PGA1_262p00280at 31.712 kb on + strand, within PGA1_262p00280at 31.755 kb on - strand, within PGA1_262p00280at 31.808 kb on - strand, within PGA1_262p00280at 31.896 kb on + strand, within PGA1_262p00280at 31.918 kb on + strand, within PGA1_262p00280at 31.926 kb on - strand, within PGA1_262p00280at 32.259 kb on - strand, within PGA1_262p00280at 32.262 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.325 kb on - strand, within PGA1_262p00280at 32.355 kb on - strandat 32.396 kb on + strandat 32.460 kb on + strandat 32.613 kb on - strandat 32.623 kb on - strandat 32.623 kb on - strandat 32.623 kb on - strandat 32.667 kb on - strandat 32.712 kb on + strandat 32.712 kb on + strandat 32.720 kb on + strand, within PGA1_262p00290at 32.720 kb on - strand, within PGA1_262p00290at 32.720 kb on - strand, within PGA1_262p00290at 32.780 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.016 kb on + strand, within PGA1_262p00290at 33.049 kb on - strand, within PGA1_262p00290at 33.122 kb on - strand, within PGA1_262p00290at 33.151 kb on + strand, within PGA1_262p00290at 33.159 kb on - strand, within PGA1_262p00290at 33.159 kb on - strand, within PGA1_262p00290at 33.172 kb on - strand, within PGA1_262p00290at 33.174 kb on + strand, within PGA1_262p00290at 33.174 kb on + strand, within PGA1_262p00290at 33.237 kb on - strandat 33.259 kb on + strandat 33.278 kb on + strandat 33.286 kb on - strandat 33.305 kb on + strandat 33.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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30,493 + -0.1
30,589 + +3.3
30,597 - -2.4
30,597 - +2.8
30,657 + -0.9
30,703 + +2.0
30,822 + PGA1_262p00270 0.23 +0.7
30,989 + PGA1_262p00270 0.48 -1.9
31,150 - PGA1_262p00270 0.72 -0.6
31,175 - PGA1_262p00270 0.76 +0.1
31,200 + PGA1_262p00270 0.80 +1.4
31,248 - PGA1_262p00270 0.87 -2.0
31,340 + +0.1
31,388 + +1.7
31,393 + -2.7
31,491 + -0.5
31,620 + PGA1_262p00280 0.19 -1.8
31,620 + PGA1_262p00280 0.19 +2.0
31,643 - PGA1_262p00280 0.21 +0.3
31,712 + PGA1_262p00280 0.28 +0.7
31,755 - PGA1_262p00280 0.32 +2.8
31,808 - PGA1_262p00280 0.37 +0.8
31,896 + PGA1_262p00280 0.46 +1.3
31,918 + PGA1_262p00280 0.48 +0.9
31,926 - PGA1_262p00280 0.49 -1.1
32,259 - PGA1_262p00280 0.81 +0.1
32,262 + PGA1_262p00280 0.81 +0.7
32,316 + PGA1_262p00280 0.87 +2.9
32,316 + PGA1_262p00280 0.87 -2.5
32,325 - PGA1_262p00280 0.87 +0.5
32,355 - +3.7
32,396 + +1.0
32,460 + +1.2
32,613 - +0.1
32,623 - +0.8
32,623 - +1.6
32,623 - +1.1
32,667 - -0.4
32,712 + +0.5
32,712 + -0.5
32,720 + PGA1_262p00290 0.11 +0.5
32,720 - PGA1_262p00290 0.11 +1.7
32,720 - PGA1_262p00290 0.11 +2.4
32,780 + PGA1_262p00290 0.21 +0.7
33,016 + PGA1_262p00290 0.59 -1.8
33,016 + PGA1_262p00290 0.59 +0.8
33,016 + PGA1_262p00290 0.59 -0.1
33,016 + PGA1_262p00290 0.59 +4.3
33,049 - PGA1_262p00290 0.65 -0.1
33,122 - PGA1_262p00290 0.76 -1.3
33,151 + PGA1_262p00290 0.81 -2.1
33,159 - PGA1_262p00290 0.83 -0.9
33,159 - PGA1_262p00290 0.83 -1.1
33,172 - PGA1_262p00290 0.85 -1.3
33,174 + PGA1_262p00290 0.85 +1.1
33,174 + PGA1_262p00290 0.85 +2.4
33,237 - +1.8
33,259 + -0.3
33,278 + -1.4
33,286 - -1.5
33,305 + +0.3
33,399 + -0.9

Or see this region's nucleotide sequence