Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36020

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c36000 and PGA1_c36010 are separated by 15 nucleotidesPGA1_c36010 and PGA1_c36020 overlap by 4 nucleotidesPGA1_c36020 and PGA1_c36030 are separated by 222 nucleotidesPGA1_c36030 and PGA1_c36040 are separated by 191 nucleotidesPGA1_c36040 and PGA1_c36050 are separated by 141 nucleotides PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811 _c36000 PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798 _c36010 PGA1_c36020: PGA1_c36020 - putative 3'-5'-exonuclease, at 3,769,795 to 3,770,409 _c36020 PGA1_c36030: PGA1_c36030 - tRNA-Leu, at 3,770,632 to 3,770,718 _c36030 PGA1_c36040: PGA1_c36040 - tRNA-Leu, at 3,770,910 to 3,770,996 _c36040 PGA1_c36050: PGA1_c36050 - putative globin, at 3,771,138 to 3,771,548 _c36050 Position (kb) 3769 3770 3771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3768.832 kb on - strandat 3768.832 kb on - strandat 3768.832 kb on - strandat 3768.832 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3769.801 kb on - strandat 3770.084 kb on - strand, within PGA1_c36020at 3770.091 kb on - strand, within PGA1_c36020at 3770.214 kb on - strand, within PGA1_c36020at 3770.492 kb on + strandat 3770.492 kb on + strandat 3770.492 kb on + strandat 3770.522 kb on + strandat 3770.529 kb on + strandat 3770.534 kb on + strandat 3770.537 kb on - strandat 3770.537 kb on - strandat 3770.537 kb on - strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.539 kb on + strandat 3770.542 kb on - strandat 3770.542 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.547 kb on - strandat 3770.566 kb on - strandat 3770.589 kb on + strandat 3770.592 kb on - strandat 3770.849 kb on - strandat 3770.859 kb on + strandat 3770.998 kb on + strandat 3771.099 kb on + strandat 3771.099 kb on + strandat 3771.099 kb on + strandat 3771.099 kb on + strandat 3771.107 kb on - strandat 3771.107 kb on - strandat 3771.112 kb on - strandat 3771.116 kb on + strandat 3771.116 kb on + strandat 3771.144 kb on - strandat 3771.154 kb on + strandat 3771.176 kb on - strandat 3771.201 kb on + strand, within PGA1_c36050at 3771.222 kb on - strand, within PGA1_c36050at 3771.224 kb on + strand, within PGA1_c36050at 3771.256 kb on + strand, within PGA1_c36050at 3771.256 kb on - strand, within PGA1_c36050at 3771.299 kb on + strand, within PGA1_c36050at 3771.303 kb on + strand, within PGA1_c36050at 3771.351 kb on + strand, within PGA1_c36050at 3771.359 kb on - strand, within PGA1_c36050at 3771.376 kb on + strand, within PGA1_c36050at 3771.403 kb on + strand, within PGA1_c36050at 3771.404 kb on - strand, within PGA1_c36050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,768,832 - +0.1
3,768,832 - -0.5
3,768,832 - -0.6
3,768,832 - -3.5
3,769,801 - -0.6
3,769,801 - -2.5
3,769,801 - -1.7
3,769,801 - -1.0
3,769,801 - -0.3
3,769,801 - -2.5
3,769,801 - -2.0
3,769,801 - -0.2
3,770,084 - PGA1_c36020 0.47 -1.5
3,770,091 - PGA1_c36020 0.48 -0.8
3,770,214 - PGA1_c36020 0.68 +0.1
3,770,492 + +2.4
3,770,492 + -3.0
3,770,492 + -1.1
3,770,522 + -0.1
3,770,529 + +3.2
3,770,534 + +0.5
3,770,537 - +1.6
3,770,537 - -2.5
3,770,537 - +1.1
3,770,539 + -0.9
3,770,539 + +2.0
3,770,539 + -2.9
3,770,539 + -1.7
3,770,539 + +2.2
3,770,539 + +1.0
3,770,539 + +0.2
3,770,539 + +2.0
3,770,539 + -1.0
3,770,539 + -0.4
3,770,539 + -2.9
3,770,539 + +2.0
3,770,539 + +1.9
3,770,539 + -0.7
3,770,542 - +1.8
3,770,542 - -0.1
3,770,547 - -1.6
3,770,547 - +0.2
3,770,547 - +3.7
3,770,547 - -1.2
3,770,547 - -1.9
3,770,547 - -3.1
3,770,547 - +0.6
3,770,547 - +2.4
3,770,566 - -0.5
3,770,589 + -0.3
3,770,592 - +0.3
3,770,849 - +1.5
3,770,859 + -0.4
3,770,998 + -0.8
3,771,099 + -0.6
3,771,099 + +2.3
3,771,099 + +0.8
3,771,099 + -0.4
3,771,107 - -1.1
3,771,107 - -1.6
3,771,112 - +0.7
3,771,116 + -2.2
3,771,116 + +1.3
3,771,144 - -1.7
3,771,154 + -1.4
3,771,176 - -1.5
3,771,201 + PGA1_c36050 0.15 -0.4
3,771,222 - PGA1_c36050 0.20 -1.9
3,771,224 + PGA1_c36050 0.21 -2.3
3,771,256 + PGA1_c36050 0.29 -0.3
3,771,256 - PGA1_c36050 0.29 +0.9
3,771,299 + PGA1_c36050 0.39 -3.5
3,771,303 + PGA1_c36050 0.40 -0.9
3,771,351 + PGA1_c36050 0.52 +2.0
3,771,359 - PGA1_c36050 0.54 -1.7
3,771,376 + PGA1_c36050 0.58 -2.0
3,771,403 + PGA1_c36050 0.64 -0.5
3,771,404 - PGA1_c36050 0.65 -0.8

Or see this region's nucleotide sequence