Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03250

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03230 and PGA1_c03240 are separated by 62 nucleotidesPGA1_c03240 and PGA1_c03250 overlap by 4 nucleotidesPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotidesPGA1_c03260 and PGA1_c03270 overlap by 4 nucleotides PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393 _c03230 PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097 _c03240 PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647 _c03270 Position (kb) 311 312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 310.153 kb on + strand, within PGA1_c03230at 310.158 kb on + strand, within PGA1_c03230at 310.166 kb on - strand, within PGA1_c03230at 310.299 kb on - strand, within PGA1_c03230at 310.348 kb on - strandat 310.440 kb on + strandat 310.639 kb on + strand, within PGA1_c03240at 310.675 kb on - strand, within PGA1_c03240at 310.707 kb on - strand, within PGA1_c03240at 310.721 kb on - strand, within PGA1_c03240at 310.811 kb on + strand, within PGA1_c03240at 310.816 kb on + strand, within PGA1_c03240at 310.922 kb on + strand, within PGA1_c03240at 310.971 kb on - strand, within PGA1_c03240at 310.981 kb on - strand, within PGA1_c03240at 310.990 kb on + strand, within PGA1_c03240at 310.998 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.049 kb on + strandat 311.057 kb on - strandat 311.076 kb on + strandat 311.099 kb on + strandat 311.099 kb on + strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.109 kb on + strandat 311.124 kb on - strandat 311.179 kb on + strand, within PGA1_c03250at 311.208 kb on + strand, within PGA1_c03250at 311.221 kb on - strand, within PGA1_c03250at 311.270 kb on + strand, within PGA1_c03250at 311.331 kb on + strand, within PGA1_c03250at 311.376 kb on + strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260at 312.121 kb on + strand, within PGA1_c03260at 312.162 kb on + strand, within PGA1_c03260at 312.187 kb on + strand, within PGA1_c03260at 312.207 kb on - strand, within PGA1_c03260at 312.226 kb on - strand, within PGA1_c03260at 312.236 kb on + strand, within PGA1_c03260at 312.265 kb on + strand, within PGA1_c03260at 312.292 kb on - strand, within PGA1_c03260at 312.345 kb on - strandat 312.345 kb on - strandat 312.364 kb on + strandat 312.442 kb on + strandat 312.536 kb on + strand, within PGA1_c03270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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310,153 + PGA1_c03230 0.73 -1.3
310,158 + PGA1_c03230 0.74 +1.4
310,166 - PGA1_c03230 0.75 -1.5
310,299 - PGA1_c03230 0.89 -1.7
310,348 - +0.7
310,440 + +0.2
310,639 + PGA1_c03240 0.29 -1.6
310,675 - PGA1_c03240 0.34 +1.7
310,707 - PGA1_c03240 0.39 -1.8
310,721 - PGA1_c03240 0.41 +1.9
310,811 + PGA1_c03240 0.55 +1.1
310,816 + PGA1_c03240 0.56 -2.0
310,922 + PGA1_c03240 0.73 -0.1
310,971 - PGA1_c03240 0.80 -2.0
310,981 - PGA1_c03240 0.82 -0.1
310,990 + PGA1_c03240 0.83 -2.1
310,998 - PGA1_c03240 0.84 +1.4
311,024 - PGA1_c03240 0.88 -0.3
311,024 - PGA1_c03240 0.88 +1.5
311,049 + +0.7
311,057 - -1.1
311,076 + -0.9
311,099 + -1.8
311,099 + -0.1
311,107 - +0.2
311,107 - -1.8
311,107 - +0.8
311,107 - +0.0
311,107 - -0.3
311,109 + -2.3
311,124 - +0.6
311,179 + PGA1_c03250 0.17 +0.4
311,208 + PGA1_c03250 0.23 -1.4
311,221 - PGA1_c03250 0.26 +0.7
311,270 + PGA1_c03250 0.36 -0.1
311,331 + PGA1_c03250 0.48 +3.2
311,376 + PGA1_c03250 0.57 -2.5
311,411 - PGA1_c03250 0.64 +1.6
311,411 - PGA1_c03250 0.64 +1.0
311,420 + PGA1_c03250 0.66 -0.6
311,422 - PGA1_c03250 0.67 +1.2
311,452 + PGA1_c03250 0.73 +1.9
311,499 + PGA1_c03250 0.82 -1.7
311,508 + PGA1_c03250 0.84 -0.7
311,537 - -2.1
311,598 + +0.6
311,617 - -3.8
311,630 + -1.4
311,637 + -1.1
311,637 + +3.2
311,668 - PGA1_c03260 0.11 -1.1
311,707 - PGA1_c03260 0.15 -1.6
311,757 - PGA1_c03260 0.22 -0.6
311,841 + PGA1_c03260 0.32 -2.0
311,871 + PGA1_c03260 0.36 -1.5
311,871 + PGA1_c03260 0.36 -2.0
311,871 + PGA1_c03260 0.36 -0.4
311,913 + PGA1_c03260 0.41 +2.6
311,952 + PGA1_c03260 0.46 -0.4
311,962 + PGA1_c03260 0.47 -2.3
311,975 - PGA1_c03260 0.48 +1.9
311,984 - PGA1_c03260 0.49 -2.0
311,990 + PGA1_c03260 0.50 -1.1
311,998 - PGA1_c03260 0.51 -1.4
312,016 + PGA1_c03260 0.53 +3.1
312,048 + PGA1_c03260 0.57 -1.6
312,050 + PGA1_c03260 0.58 +0.6
312,050 + PGA1_c03260 0.58 -0.8
312,050 + PGA1_c03260 0.58 +3.2
312,050 + PGA1_c03260 0.58 +1.0
312,056 - PGA1_c03260 0.58 -1.6
312,058 - PGA1_c03260 0.59 -1.7
312,121 + PGA1_c03260 0.66 -1.1
312,162 + PGA1_c03260 0.71 +0.8
312,187 + PGA1_c03260 0.74 -2.0
312,207 - PGA1_c03260 0.77 -0.6
312,226 - PGA1_c03260 0.79 +0.6
312,236 + PGA1_c03260 0.80 +1.4
312,265 + PGA1_c03260 0.84 -1.3
312,292 - PGA1_c03260 0.87 -1.4
312,345 - -0.8
312,345 - +0.8
312,364 + -2.8
312,442 + +3.4
312,536 + PGA1_c03270 0.12 -1.5

Or see this region's nucleotide sequence