Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30090 and PGA1_c30100 overlap by 4 nucleotides PGA1_c30100 and PGA1_c30110 are separated by 12 nucleotides PGA1_c30110 and PGA1_c30120 are separated by 14 nucleotides
PGA1_c30090: PGA1_c30090 - cytochrome c oxidase subunit 3, at 3,146,201 to 3,147,070
_c30090
PGA1_c30100: PGA1_c30100 - cytochrome c oxidase subunit 4, at 3,147,067 to 3,147,264
_c30100
PGA1_c30110: PGA1_c30110 - cytochrome c oxidase subunit 2, at 3,147,277 to 3,148,005
_c30110
PGA1_c30120: PGA1_c30120 - cytochrome c oxidase subunit 1, at 3,148,020 to 3,149,630
_c30120
Position (kb)
3147
3148
3149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3146.284 kb on - strand at 3146.337 kb on + strand, within PGA1_c30090 at 3146.495 kb on + strand, within PGA1_c30090 at 3146.539 kb on + strand, within PGA1_c30090 at 3146.548 kb on - strand, within PGA1_c30090 at 3146.554 kb on + strand, within PGA1_c30090 at 3146.554 kb on + strand, within PGA1_c30090 at 3146.554 kb on + strand, within PGA1_c30090 at 3146.554 kb on + strand, within PGA1_c30090 at 3146.562 kb on - strand, within PGA1_c30090 at 3146.562 kb on - strand, within PGA1_c30090 at 3146.562 kb on - strand, within PGA1_c30090 at 3146.595 kb on + strand, within PGA1_c30090 at 3146.634 kb on + strand, within PGA1_c30090 at 3146.667 kb on - strand, within PGA1_c30090 at 3146.667 kb on - strand, within PGA1_c30090 at 3146.694 kb on + strand, within PGA1_c30090 at 3146.696 kb on + strand, within PGA1_c30090 at 3146.704 kb on + strand, within PGA1_c30090 at 3146.715 kb on + strand, within PGA1_c30090 at 3146.715 kb on + strand, within PGA1_c30090 at 3146.715 kb on + strand, within PGA1_c30090 at 3146.715 kb on + strand, within PGA1_c30090 at 3146.715 kb on + strand, within PGA1_c30090 at 3146.725 kb on + strand, within PGA1_c30090 at 3146.733 kb on - strand, within PGA1_c30090 at 3146.794 kb on + strand, within PGA1_c30090 at 3146.802 kb on - strand, within PGA1_c30090 at 3146.804 kb on + strand, within PGA1_c30090 at 3146.852 kb on + strand, within PGA1_c30090 at 3146.964 kb on + strand, within PGA1_c30090 at 3146.972 kb on - strand, within PGA1_c30090 at 3147.010 kb on + strand at 3147.010 kb on + strand at 3147.025 kb on - strand at 3147.161 kb on - strand, within PGA1_c30100 at 3147.161 kb on - strand, within PGA1_c30100 at 3147.161 kb on - strand, within PGA1_c30100 at 3147.161 kb on - strand, within PGA1_c30100 at 3147.227 kb on - strand, within PGA1_c30100 at 3147.257 kb on - strand at 3147.278 kb on - strand at 3147.303 kb on - strand at 3147.562 kb on + strand, within PGA1_c30110 at 3147.572 kb on + strand, within PGA1_c30110 at 3147.667 kb on + strand, within PGA1_c30110 at 3147.675 kb on - strand, within PGA1_c30110 at 3147.695 kb on - strand, within PGA1_c30110 at 3147.786 kb on - strand, within PGA1_c30110 at 3147.865 kb on - strand, within PGA1_c30110 at 3147.871 kb on - strand, within PGA1_c30110 at 3147.954 kb on + strand at 3147.959 kb on - strand at 3147.959 kb on - strand at 3147.960 kb on + strand at 3148.015 kb on - strand at 3148.025 kb on - strand at 3148.086 kb on - strand at 3148.088 kb on + strand at 3148.109 kb on - strand at 3148.134 kb on - strand at 3148.178 kb on + strand at 3148.231 kb on - strand, within PGA1_c30120 at 3148.254 kb on + strand, within PGA1_c30120 at 3148.321 kb on - strand, within PGA1_c30120 at 3148.323 kb on + strand, within PGA1_c30120 at 3148.331 kb on - strand, within PGA1_c30120 at 3148.352 kb on + strand, within PGA1_c30120 at 3148.357 kb on + strand, within PGA1_c30120 at 3148.365 kb on - strand, within PGA1_c30120 at 3148.370 kb on + strand, within PGA1_c30120 at 3148.378 kb on - strand, within PGA1_c30120 at 3148.378 kb on - strand, within PGA1_c30120 at 3148.381 kb on + strand, within PGA1_c30120 at 3148.430 kb on + strand, within PGA1_c30120 at 3148.481 kb on - strand, within PGA1_c30120 at 3148.572 kb on + strand, within PGA1_c30120 at 3148.666 kb on + strand, within PGA1_c30120 at 3148.666 kb on + strand, within PGA1_c30120 at 3148.674 kb on - strand, within PGA1_c30120 at 3148.674 kb on - strand, within PGA1_c30120 at 3148.674 kb on - strand, within PGA1_c30120 at 3148.690 kb on + strand, within PGA1_c30120 at 3148.690 kb on + strand, within PGA1_c30120 at 3148.690 kb on + strand, within PGA1_c30120 at 3148.690 kb on + strand, within PGA1_c30120 at 3148.690 kb on + strand, within PGA1_c30120 at 3148.698 kb on - strand, within PGA1_c30120 at 3148.720 kb on - strand, within PGA1_c30120 at 3148.827 kb on + strand, within PGA1_c30120 at 3148.845 kb on - strand, within PGA1_c30120 at 3148.850 kb on - strand, within PGA1_c30120 at 3148.860 kb on - strand, within PGA1_c30120 at 3148.929 kb on - strand, within PGA1_c30120 at 3148.964 kb on + strand, within PGA1_c30120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,146,284 - -3.7 3,146,337 + PGA1_c30090 0.16 +1.9 3,146,495 + PGA1_c30090 0.34 -0.4 3,146,539 + PGA1_c30090 0.39 +3.6 3,146,548 - PGA1_c30090 0.40 -1.7 3,146,554 + PGA1_c30090 0.41 +1.9 3,146,554 + PGA1_c30090 0.41 -0.2 3,146,554 + PGA1_c30090 0.41 +1.7 3,146,554 + PGA1_c30090 0.41 +0.8 3,146,562 - PGA1_c30090 0.41 -3.1 3,146,562 - PGA1_c30090 0.41 -2.0 3,146,562 - PGA1_c30090 0.41 +0.2 3,146,595 + PGA1_c30090 0.45 -1.9 3,146,634 + PGA1_c30090 0.50 -1.9 3,146,667 - PGA1_c30090 0.54 -2.4 3,146,667 - PGA1_c30090 0.54 +2.0 3,146,694 + PGA1_c30090 0.57 +2.0 3,146,696 + PGA1_c30090 0.57 -0.8 3,146,704 + PGA1_c30090 0.58 +1.4 3,146,715 + PGA1_c30090 0.59 +2.3 3,146,715 + PGA1_c30090 0.59 +0.4 3,146,715 + PGA1_c30090 0.59 -0.8 3,146,715 + PGA1_c30090 0.59 -1.0 3,146,715 + PGA1_c30090 0.59 -2.1 3,146,725 + PGA1_c30090 0.60 -0.6 3,146,733 - PGA1_c30090 0.61 -0.8 3,146,794 + PGA1_c30090 0.68 +2.6 3,146,802 - PGA1_c30090 0.69 -1.4 3,146,804 + PGA1_c30090 0.69 +1.4 3,146,852 + PGA1_c30090 0.75 -2.6 3,146,964 + PGA1_c30090 0.88 +1.1 3,146,972 - PGA1_c30090 0.89 +2.0 3,147,010 + +2.4 3,147,010 + -0.6 3,147,025 - -1.8 3,147,161 - PGA1_c30100 0.47 -1.9 3,147,161 - PGA1_c30100 0.47 +0.1 3,147,161 - PGA1_c30100 0.47 -1.1 3,147,161 - PGA1_c30100 0.47 -0.6 3,147,227 - PGA1_c30100 0.81 +0.0 3,147,257 - -0.3 3,147,278 - -1.6 3,147,303 - +0.5 3,147,562 + PGA1_c30110 0.39 -2.4 3,147,572 + PGA1_c30110 0.40 +0.7 3,147,667 + PGA1_c30110 0.53 +2.1 3,147,675 - PGA1_c30110 0.55 -0.3 3,147,695 - PGA1_c30110 0.57 +0.9 3,147,786 - PGA1_c30110 0.70 +1.1 3,147,865 - PGA1_c30110 0.81 -0.8 3,147,871 - PGA1_c30110 0.81 +0.5 3,147,954 + -1.9 3,147,959 - -1.1 3,147,959 - -1.4 3,147,960 + +0.7 3,148,015 - +0.7 3,148,025 - -1.9 3,148,086 - +2.0 3,148,088 + +2.0 3,148,109 - -2.6 3,148,134 - +1.3 3,148,178 + -0.0 3,148,231 - PGA1_c30120 0.13 +1.3 3,148,254 + PGA1_c30120 0.15 +1.5 3,148,321 - PGA1_c30120 0.19 +2.8 3,148,323 + PGA1_c30120 0.19 -2.4 3,148,331 - PGA1_c30120 0.19 -0.7 3,148,352 + PGA1_c30120 0.21 +1.5 3,148,357 + PGA1_c30120 0.21 -0.6 3,148,365 - PGA1_c30120 0.21 +0.2 3,148,370 + PGA1_c30120 0.22 -1.6 3,148,378 - PGA1_c30120 0.22 -2.6 3,148,378 - PGA1_c30120 0.22 -1.5 3,148,381 + PGA1_c30120 0.22 -2.5 3,148,430 + PGA1_c30120 0.25 -2.0 3,148,481 - PGA1_c30120 0.29 -0.4 3,148,572 + PGA1_c30120 0.34 -1.8 3,148,666 + PGA1_c30120 0.40 -0.2 3,148,666 + PGA1_c30120 0.40 -1.4 3,148,674 - PGA1_c30120 0.41 +0.8 3,148,674 - PGA1_c30120 0.41 +0.9 3,148,674 - PGA1_c30120 0.41 +1.0 3,148,690 + PGA1_c30120 0.42 -2.2 3,148,690 + PGA1_c30120 0.42 -1.1 3,148,690 + PGA1_c30120 0.42 -0.6 3,148,690 + PGA1_c30120 0.42 +0.9 3,148,690 + PGA1_c30120 0.42 +0.2 3,148,698 - PGA1_c30120 0.42 +0.7 3,148,720 - PGA1_c30120 0.43 -0.3 3,148,827 + PGA1_c30120 0.50 -1.7 3,148,845 - PGA1_c30120 0.51 -1.6 3,148,850 - PGA1_c30120 0.52 -2.3 3,148,860 - PGA1_c30120 0.52 +1.6 3,148,929 - PGA1_c30120 0.56 -0.8 3,148,964 + PGA1_c30120 0.59 -1.0
Or see this region's nucleotide sequence