Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30030 and PGA1_c30040 are separated by 78 nucleotides PGA1_c30040 and PGA1_c30050 are separated by 35 nucleotides
PGA1_c30030: PGA1_c30030 - putative D-alanyl-D-alanine carboxypeptidase, at 3,138,763 to 3,140,352
_c30030
PGA1_c30040: PGA1_c30040 - cytochrome oxidase maturation protein CcoS, at 3,140,431 to 3,140,589
_c30040
PGA1_c30050: PGA1_c30050 - heavy metal translocating ATPase CcoI, at 3,140,625 to 3,142,805
_c30050
Position (kb)
3140
3141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3140.429 kb on + strand at 3140.484 kb on + strand, within PGA1_c30040 at 3140.511 kb on + strand, within PGA1_c30040 at 3140.516 kb on + strand, within PGA1_c30040 at 3140.516 kb on + strand, within PGA1_c30040 at 3140.516 kb on + strand, within PGA1_c30040 at 3140.521 kb on + strand, within PGA1_c30040 at 3140.524 kb on - strand, within PGA1_c30040 at 3140.524 kb on - strand, within PGA1_c30040 at 3140.524 kb on - strand, within PGA1_c30040 at 3140.524 kb on - strand, within PGA1_c30040 at 3140.529 kb on - strand, within PGA1_c30040 at 3140.543 kb on - strand, within PGA1_c30040 at 3140.589 kb on + strand at 3140.592 kb on - strand at 3140.602 kb on + strand at 3140.607 kb on + strand at 3140.676 kb on + strand at 3140.684 kb on - strand at 3140.716 kb on + strand at 3140.800 kb on - strand at 3140.803 kb on - strand at 3140.805 kb on - strand at 3140.894 kb on + strand, within PGA1_c30050 at 3140.922 kb on + strand, within PGA1_c30050 at 3140.949 kb on + strand, within PGA1_c30050 at 3140.963 kb on - strand, within PGA1_c30050 at 3141.078 kb on - strand, within PGA1_c30050 at 3141.102 kb on + strand, within PGA1_c30050 at 3141.108 kb on + strand, within PGA1_c30050 at 3141.173 kb on - strand, within PGA1_c30050 at 3141.217 kb on + strand, within PGA1_c30050 at 3141.225 kb on - strand, within PGA1_c30050 at 3141.245 kb on - strand, within PGA1_c30050 at 3141.324 kb on - strand, within PGA1_c30050 at 3141.332 kb on + strand, within PGA1_c30050 at 3141.368 kb on + strand, within PGA1_c30050 at 3141.412 kb on + strand, within PGA1_c30050 at 3141.420 kb on - strand, within PGA1_c30050 at 3141.448 kb on + strand, within PGA1_c30050 at 3141.456 kb on - strand, within PGA1_c30050 at 3141.460 kb on + strand, within PGA1_c30050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,140,429 + -0.8 3,140,484 + PGA1_c30040 0.33 -0.8 3,140,511 + PGA1_c30040 0.50 -2.5 3,140,516 + PGA1_c30040 0.53 -0.9 3,140,516 + PGA1_c30040 0.53 +1.4 3,140,516 + PGA1_c30040 0.53 -1.6 3,140,521 + PGA1_c30040 0.57 -0.8 3,140,524 - PGA1_c30040 0.58 -1.3 3,140,524 - PGA1_c30040 0.58 -2.1 3,140,524 - PGA1_c30040 0.58 -1.0 3,140,524 - PGA1_c30040 0.58 -1.9 3,140,529 - PGA1_c30040 0.62 -0.1 3,140,543 - PGA1_c30040 0.70 -0.6 3,140,589 + +2.2 3,140,592 - +1.3 3,140,602 + -2.6 3,140,607 + +2.2 3,140,676 + +0.2 3,140,684 - -1.4 3,140,716 + -1.3 3,140,800 - -0.8 3,140,803 - -2.5 3,140,805 - +0.9 3,140,894 + PGA1_c30050 0.12 -1.7 3,140,922 + PGA1_c30050 0.14 +1.4 3,140,949 + PGA1_c30050 0.15 -0.2 3,140,963 - PGA1_c30050 0.15 -2.4 3,141,078 - PGA1_c30050 0.21 -2.3 3,141,102 + PGA1_c30050 0.22 +1.8 3,141,108 + PGA1_c30050 0.22 -0.6 3,141,173 - PGA1_c30050 0.25 +0.9 3,141,217 + PGA1_c30050 0.27 -2.3 3,141,225 - PGA1_c30050 0.28 -2.1 3,141,245 - PGA1_c30050 0.28 +0.3 3,141,324 - PGA1_c30050 0.32 -0.3 3,141,332 + PGA1_c30050 0.32 -1.7 3,141,368 + PGA1_c30050 0.34 -1.9 3,141,412 + PGA1_c30050 0.36 -0.2 3,141,420 - PGA1_c30050 0.36 +2.4 3,141,448 + PGA1_c30050 0.38 -2.1 3,141,456 - PGA1_c30050 0.38 +0.5 3,141,460 + PGA1_c30050 0.38 +2.3
Or see this region's nucleotide sequence