Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30040

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c30030 and PGA1_c30040 are separated by 78 nucleotidesPGA1_c30040 and PGA1_c30050 are separated by 35 nucleotides PGA1_c30030: PGA1_c30030 - putative D-alanyl-D-alanine carboxypeptidase, at 3,138,763 to 3,140,352 _c30030 PGA1_c30040: PGA1_c30040 - cytochrome oxidase maturation protein CcoS, at 3,140,431 to 3,140,589 _c30040 PGA1_c30050: PGA1_c30050 - heavy metal translocating ATPase CcoI, at 3,140,625 to 3,142,805 _c30050 Position (kb) 3140 3141Strain fitness (log2 ratio) -2 -1 0 1 2at 3140.429 kb on + strandat 3140.484 kb on + strand, within PGA1_c30040at 3140.511 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.516 kb on + strand, within PGA1_c30040at 3140.521 kb on + strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.524 kb on - strand, within PGA1_c30040at 3140.529 kb on - strand, within PGA1_c30040at 3140.543 kb on - strand, within PGA1_c30040at 3140.589 kb on + strandat 3140.592 kb on - strandat 3140.602 kb on + strandat 3140.607 kb on + strandat 3140.676 kb on + strandat 3140.684 kb on - strandat 3140.716 kb on + strandat 3140.800 kb on - strandat 3140.803 kb on - strandat 3140.805 kb on - strandat 3140.894 kb on + strand, within PGA1_c30050at 3140.922 kb on + strand, within PGA1_c30050at 3140.949 kb on + strand, within PGA1_c30050at 3140.963 kb on - strand, within PGA1_c30050at 3141.078 kb on - strand, within PGA1_c30050at 3141.102 kb on + strand, within PGA1_c30050at 3141.108 kb on + strand, within PGA1_c30050at 3141.173 kb on - strand, within PGA1_c30050at 3141.217 kb on + strand, within PGA1_c30050at 3141.225 kb on - strand, within PGA1_c30050at 3141.245 kb on - strand, within PGA1_c30050at 3141.324 kb on - strand, within PGA1_c30050at 3141.332 kb on + strand, within PGA1_c30050at 3141.368 kb on + strand, within PGA1_c30050at 3141.412 kb on + strand, within PGA1_c30050at 3141.420 kb on - strand, within PGA1_c30050at 3141.448 kb on + strand, within PGA1_c30050at 3141.456 kb on - strand, within PGA1_c30050at 3141.460 kb on + strand, within PGA1_c30050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,140,429 + -0.8
3,140,484 + PGA1_c30040 0.33 -0.8
3,140,511 + PGA1_c30040 0.50 -2.5
3,140,516 + PGA1_c30040 0.53 -0.9
3,140,516 + PGA1_c30040 0.53 +1.4
3,140,516 + PGA1_c30040 0.53 -1.6
3,140,521 + PGA1_c30040 0.57 -0.8
3,140,524 - PGA1_c30040 0.58 -1.3
3,140,524 - PGA1_c30040 0.58 -2.1
3,140,524 - PGA1_c30040 0.58 -1.0
3,140,524 - PGA1_c30040 0.58 -1.9
3,140,529 - PGA1_c30040 0.62 -0.1
3,140,543 - PGA1_c30040 0.70 -0.6
3,140,589 + +2.2
3,140,592 - +1.3
3,140,602 + -2.6
3,140,607 + +2.2
3,140,676 + +0.2
3,140,684 - -1.4
3,140,716 + -1.3
3,140,800 - -0.8
3,140,803 - -2.5
3,140,805 - +0.9
3,140,894 + PGA1_c30050 0.12 -1.7
3,140,922 + PGA1_c30050 0.14 +1.4
3,140,949 + PGA1_c30050 0.15 -0.2
3,140,963 - PGA1_c30050 0.15 -2.4
3,141,078 - PGA1_c30050 0.21 -2.3
3,141,102 + PGA1_c30050 0.22 +1.8
3,141,108 + PGA1_c30050 0.22 -0.6
3,141,173 - PGA1_c30050 0.25 +0.9
3,141,217 + PGA1_c30050 0.27 -2.3
3,141,225 - PGA1_c30050 0.28 -2.1
3,141,245 - PGA1_c30050 0.28 +0.3
3,141,324 - PGA1_c30050 0.32 -0.3
3,141,332 + PGA1_c30050 0.32 -1.7
3,141,368 + PGA1_c30050 0.34 -1.9
3,141,412 + PGA1_c30050 0.36 -0.2
3,141,420 - PGA1_c30050 0.36 +2.4
3,141,448 + PGA1_c30050 0.38 -2.1
3,141,456 - PGA1_c30050 0.38 +0.5
3,141,460 + PGA1_c30050 0.38 +2.3

Or see this region's nucleotide sequence