Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29070 and PGA1_c29080 are separated by 55 nucleotides PGA1_c29080 and PGA1_c29090 are separated by 39 nucleotides PGA1_c29090 and PGA1_c29100 are separated by 156 nucleotides
PGA1_c29070: PGA1_c29070 - integral membrane protein PecM, at 3,046,638 to 3,047,507
_c29070
PGA1_c29080: PGA1_c29080 - hypothetical protein, at 3,047,563 to 3,048,066
_c29080
PGA1_c29090: PGA1_c29090 - RNA pyrophosphohydrolase RppH, at 3,048,106 to 3,048,588
_c29090
PGA1_c29100: PGA1_c29100 - 2,4-dienoyl-CoA reductase FadH, at 3,048,745 to 3,050,772
_c29100
Position (kb)
3047
3048
3049 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.646 kb on - strand at 3046.651 kb on + strand at 3046.653 kb on - strand at 3046.663 kb on - strand at 3046.688 kb on - strand at 3046.698 kb on - strand at 3046.705 kb on + strand at 3046.816 kb on - strand, within PGA1_c29070 at 3046.981 kb on - strand, within PGA1_c29070 at 3047.030 kb on + strand, within PGA1_c29070 at 3047.044 kb on + strand, within PGA1_c29070 at 3047.120 kb on - strand, within PGA1_c29070 at 3047.136 kb on + strand, within PGA1_c29070 at 3047.263 kb on + strand, within PGA1_c29070 at 3047.264 kb on + strand, within PGA1_c29070 at 3047.384 kb on - strand, within PGA1_c29070 at 3047.384 kb on - strand, within PGA1_c29070 at 3047.428 kb on + strand at 3047.434 kb on + strand at 3047.444 kb on + strand at 3047.452 kb on - strand at 3047.452 kb on - strand at 3047.568 kb on + strand at 3047.568 kb on - strand at 3047.640 kb on + strand, within PGA1_c29080 at 3047.684 kb on - strand, within PGA1_c29080 at 3047.697 kb on + strand, within PGA1_c29080 at 3047.730 kb on - strand, within PGA1_c29080 at 3047.743 kb on + strand, within PGA1_c29080 at 3047.789 kb on - strand, within PGA1_c29080 at 3047.808 kb on - strand, within PGA1_c29080 at 3047.818 kb on - strand, within PGA1_c29080 at 3047.872 kb on + strand, within PGA1_c29080 at 3047.882 kb on + strand, within PGA1_c29080 at 3047.882 kb on + strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.890 kb on - strand, within PGA1_c29080 at 3047.901 kb on + strand, within PGA1_c29080 at 3047.901 kb on + strand, within PGA1_c29080 at 3047.901 kb on + strand, within PGA1_c29080 at 3047.909 kb on - strand, within PGA1_c29080 at 3047.926 kb on - strand, within PGA1_c29080 at 3047.928 kb on + strand, within PGA1_c29080 at 3047.986 kb on - strand, within PGA1_c29080 at 3047.986 kb on - strand, within PGA1_c29080 at 3047.986 kb on - strand, within PGA1_c29080 at 3048.021 kb on - strand at 3048.064 kb on + strand at 3048.080 kb on + strand at 3048.090 kb on + strand at 3048.095 kb on + strand at 3048.098 kb on - strand at 3048.098 kb on - strand at 3048.238 kb on + strand, within PGA1_c29090 at 3048.529 kb on + strand, within PGA1_c29090 at 3048.542 kb on - strand at 3048.548 kb on - strand at 3048.595 kb on + strand at 3048.595 kb on + strand at 3048.595 kb on + strand at 3048.636 kb on - strand at 3048.701 kb on + strand at 3048.709 kb on - strand at 3048.720 kb on + strand at 3048.728 kb on + strand at 3048.821 kb on - strand at 3048.833 kb on + strand at 3048.852 kb on - strand at 3048.901 kb on + strand at 3048.959 kb on - strand, within PGA1_c29100 at 3049.003 kb on + strand, within PGA1_c29100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,046,638 + -1.6 3,046,638 + +0.8 3,046,638 + -1.1 3,046,645 + +2.2 3,046,645 + -1.5 3,046,645 + -0.2 3,046,646 - -0.4 3,046,651 + +0.8 3,046,653 - -1.4 3,046,663 - -0.1 3,046,688 - +1.0 3,046,698 - -1.4 3,046,705 + +1.0 3,046,816 - PGA1_c29070 0.20 -0.5 3,046,981 - PGA1_c29070 0.39 -0.6 3,047,030 + PGA1_c29070 0.45 +0.2 3,047,044 + PGA1_c29070 0.47 -0.4 3,047,120 - PGA1_c29070 0.55 -2.5 3,047,136 + PGA1_c29070 0.57 +1.2 3,047,263 + PGA1_c29070 0.72 -2.0 3,047,264 + PGA1_c29070 0.72 +2.1 3,047,384 - PGA1_c29070 0.86 +1.8 3,047,384 - PGA1_c29070 0.86 +1.5 3,047,428 + -0.6 3,047,434 + +1.2 3,047,444 + +0.9 3,047,452 - +0.2 3,047,452 - -0.3 3,047,568 + +4.0 3,047,568 - +2.2 3,047,640 + PGA1_c29080 0.15 +1.6 3,047,684 - PGA1_c29080 0.24 +2.8 3,047,697 + PGA1_c29080 0.27 +0.2 3,047,730 - PGA1_c29080 0.33 +0.6 3,047,743 + PGA1_c29080 0.36 +0.1 3,047,789 - PGA1_c29080 0.45 +3.8 3,047,808 - PGA1_c29080 0.49 +1.0 3,047,818 - PGA1_c29080 0.51 +0.2 3,047,872 + PGA1_c29080 0.61 +1.0 3,047,882 + PGA1_c29080 0.63 +0.5 3,047,882 + PGA1_c29080 0.63 -0.1 3,047,890 - PGA1_c29080 0.65 -0.8 3,047,890 - PGA1_c29080 0.65 -1.9 3,047,890 - PGA1_c29080 0.65 +2.7 3,047,890 - PGA1_c29080 0.65 +1.2 3,047,890 - PGA1_c29080 0.65 -2.5 3,047,890 - PGA1_c29080 0.65 -1.4 3,047,901 + PGA1_c29080 0.67 +0.2 3,047,901 + PGA1_c29080 0.67 +1.3 3,047,901 + PGA1_c29080 0.67 +1.2 3,047,909 - PGA1_c29080 0.69 -1.0 3,047,926 - PGA1_c29080 0.72 +1.7 3,047,928 + PGA1_c29080 0.72 -1.0 3,047,986 - PGA1_c29080 0.84 +1.4 3,047,986 - PGA1_c29080 0.84 -1.9 3,047,986 - PGA1_c29080 0.84 +2.8 3,048,021 - +2.6 3,048,064 + -1.4 3,048,080 + -0.1 3,048,090 + -0.4 3,048,095 + +1.9 3,048,098 - +2.8 3,048,098 - +0.6 3,048,238 + PGA1_c29090 0.27 +1.6 3,048,529 + PGA1_c29090 0.88 +2.8 3,048,542 - +0.6 3,048,548 - +3.2 3,048,595 + +0.6 3,048,595 + -2.6 3,048,595 + -0.4 3,048,636 - -1.4 3,048,701 + -0.8 3,048,709 - +1.0 3,048,720 + +1.2 3,048,728 + +1.2 3,048,821 - +0.0 3,048,833 + +1.4 3,048,852 - +0.0 3,048,901 + +1.2 3,048,959 - PGA1_c29100 0.11 +1.2 3,049,003 + PGA1_c29100 0.13 -2.0
Or see this region's nucleotide sequence