Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28670 and PGA1_c28680 are separated by 84 nucleotides
PGA1_c28670: PGA1_c28670 - hypothetical protein, at 3,001,840 to 3,002,595
_c28670
PGA1_c28680: PGA1_c28680 - putative bacteriophytochrome, at 3,002,680 to 3,005,256
_c28680
Position (kb)
3001
3002
3003 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3001.354 kb on + strand at 3001.373 kb on - strand at 3001.373 kb on - strand at 3001.500 kb on + strand at 3001.500 kb on + strand at 3001.508 kb on - strand at 3001.531 kb on - strand at 3001.645 kb on + strand at 3001.678 kb on - strand at 3001.683 kb on - strand at 3001.698 kb on + strand at 3001.703 kb on + strand at 3001.705 kb on - strand at 3001.710 kb on + strand at 3001.710 kb on + strand at 3001.718 kb on - strand at 3001.718 kb on - strand at 3001.722 kb on + strand at 3001.724 kb on - strand at 3001.768 kb on - strand at 3001.775 kb on - strand at 3001.778 kb on - strand at 3001.787 kb on + strand at 3001.790 kb on - strand at 3001.795 kb on - strand at 3001.801 kb on + strand at 3001.830 kb on + strand at 3001.867 kb on + strand at 3001.910 kb on + strand at 3001.918 kb on - strand, within PGA1_c28670 at 3001.954 kb on + strand, within PGA1_c28670 at 3001.954 kb on + strand, within PGA1_c28670 at 3001.956 kb on + strand, within PGA1_c28670 at 3001.962 kb on - strand, within PGA1_c28670 at 3001.962 kb on - strand, within PGA1_c28670 at 3001.964 kb on - strand, within PGA1_c28670 at 3001.964 kb on - strand, within PGA1_c28670 at 3001.967 kb on - strand, within PGA1_c28670 at 3001.976 kb on + strand, within PGA1_c28670 at 3001.976 kb on - strand, within PGA1_c28670 at 3002.037 kb on - strand, within PGA1_c28670 at 3002.060 kb on + strand, within PGA1_c28670 at 3002.083 kb on - strand, within PGA1_c28670 at 3002.104 kb on + strand, within PGA1_c28670 at 3002.112 kb on - strand, within PGA1_c28670 at 3002.184 kb on - strand, within PGA1_c28670 at 3002.184 kb on - strand, within PGA1_c28670 at 3002.198 kb on - strand, within PGA1_c28670 at 3002.211 kb on - strand, within PGA1_c28670 at 3002.222 kb on + strand, within PGA1_c28670 at 3002.319 kb on + strand, within PGA1_c28670 at 3002.319 kb on + strand, within PGA1_c28670 at 3002.325 kb on + strand, within PGA1_c28670 at 3002.345 kb on - strand, within PGA1_c28670 at 3002.398 kb on + strand, within PGA1_c28670 at 3002.468 kb on + strand, within PGA1_c28670 at 3002.468 kb on + strand, within PGA1_c28670 at 3002.468 kb on + strand, within PGA1_c28670 at 3002.473 kb on + strand, within PGA1_c28670 at 3002.476 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.481 kb on - strand, within PGA1_c28670 at 3002.513 kb on - strand, within PGA1_c28670 at 3002.528 kb on + strand at 3002.536 kb on + strand at 3002.544 kb on - strand at 3002.547 kb on + strand at 3002.547 kb on + strand at 3002.547 kb on + strand at 3002.547 kb on + strand at 3002.555 kb on - strand at 3002.573 kb on - strand at 3002.584 kb on + strand at 3002.611 kb on + strand at 3002.613 kb on + strand at 3002.625 kb on + strand at 3002.628 kb on - strand at 3002.633 kb on - strand at 3002.638 kb on + strand at 3002.670 kb on + strand at 3002.692 kb on - strand at 3002.692 kb on - strand at 3002.698 kb on + strand at 3002.698 kb on + strand at 3002.698 kb on + strand at 3002.705 kb on + strand at 3002.705 kb on + strand at 3002.705 kb on + strand at 3002.706 kb on - strand at 3002.713 kb on - strand at 3002.713 kb on - strand at 3002.713 kb on - strand at 3002.713 kb on - strand at 3002.713 kb on - strand at 3002.715 kb on + strand at 3002.762 kb on - strand at 3002.762 kb on - strand at 3002.795 kb on + strand at 3002.894 kb on + strand at 3002.902 kb on - strand at 3002.924 kb on + strand at 3003.004 kb on + strand, within PGA1_c28680 at 3003.012 kb on - strand, within PGA1_c28680 at 3003.012 kb on - strand, within PGA1_c28680 at 3003.022 kb on - strand, within PGA1_c28680 at 3003.130 kb on + strand, within PGA1_c28680 at 3003.145 kb on - strand, within PGA1_c28680 at 3003.176 kb on + strand, within PGA1_c28680 at 3003.176 kb on + strand, within PGA1_c28680 at 3003.176 kb on + strand, within PGA1_c28680 at 3003.176 kb on + strand, within PGA1_c28680 at 3003.178 kb on + strand, within PGA1_c28680 at 3003.178 kb on + strand, within PGA1_c28680 at 3003.184 kb on - strand, within PGA1_c28680 at 3003.186 kb on - strand, within PGA1_c28680 at 3003.192 kb on + strand, within PGA1_c28680 at 3003.192 kb on + strand, within PGA1_c28680 at 3003.197 kb on + strand, within PGA1_c28680 at 3003.209 kb on + strand, within PGA1_c28680 at 3003.210 kb on - strand, within PGA1_c28680 at 3003.211 kb on + strand, within PGA1_c28680 at 3003.216 kb on + strand, within PGA1_c28680 at 3003.224 kb on - strand, within PGA1_c28680 at 3003.264 kb on + strand, within PGA1_c28680 at 3003.275 kb on + strand, within PGA1_c28680 at 3003.287 kb on + strand, within PGA1_c28680 at 3003.289 kb on + strand, within PGA1_c28680 at 3003.289 kb on + strand, within PGA1_c28680 at 3003.297 kb on - strand, within PGA1_c28680 at 3003.297 kb on - strand, within PGA1_c28680 at 3003.297 kb on - strand, within PGA1_c28680 at 3003.312 kb on - strand, within PGA1_c28680 at 3003.392 kb on + strand, within PGA1_c28680 at 3003.436 kb on + strand, within PGA1_c28680 at 3003.440 kb on - strand, within PGA1_c28680
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,001,354 + +3.4 3,001,373 - -1.3 3,001,373 - +1.1 3,001,500 + +0.8 3,001,500 + -2.6 3,001,508 - -1.0 3,001,531 - -0.0 3,001,645 + +1.7 3,001,678 - +3.4 3,001,683 - -1.3 3,001,698 + -0.9 3,001,703 + +1.7 3,001,705 - -1.2 3,001,710 + +2.3 3,001,710 + +0.2 3,001,718 - +1.3 3,001,718 - -0.8 3,001,722 + +2.4 3,001,724 - -0.0 3,001,768 - -1.2 3,001,775 - +1.2 3,001,778 - -0.8 3,001,787 + +0.5 3,001,790 - +1.3 3,001,795 - -0.9 3,001,801 + -1.9 3,001,830 + +0.4 3,001,867 + +2.8 3,001,910 + -1.6 3,001,918 - PGA1_c28670 0.10 -1.0 3,001,954 + PGA1_c28670 0.15 +0.8 3,001,954 + PGA1_c28670 0.15 +0.8 3,001,956 + PGA1_c28670 0.15 +0.7 3,001,962 - PGA1_c28670 0.16 -1.2 3,001,962 - PGA1_c28670 0.16 +2.3 3,001,964 - PGA1_c28670 0.16 -1.6 3,001,964 - PGA1_c28670 0.16 +1.1 3,001,967 - PGA1_c28670 0.17 +1.5 3,001,976 + PGA1_c28670 0.18 +1.1 3,001,976 - PGA1_c28670 0.18 -1.2 3,002,037 - PGA1_c28670 0.26 -2.0 3,002,060 + PGA1_c28670 0.29 +1.1 3,002,083 - PGA1_c28670 0.32 +2.5 3,002,104 + PGA1_c28670 0.35 -0.0 3,002,112 - PGA1_c28670 0.36 -2.0 3,002,184 - PGA1_c28670 0.46 +1.4 3,002,184 - PGA1_c28670 0.46 -0.0 3,002,198 - PGA1_c28670 0.47 +2.1 3,002,211 - PGA1_c28670 0.49 -0.2 3,002,222 + PGA1_c28670 0.51 -2.0 3,002,319 + PGA1_c28670 0.63 -1.1 3,002,319 + PGA1_c28670 0.63 +2.0 3,002,325 + PGA1_c28670 0.64 +3.3 3,002,345 - PGA1_c28670 0.67 -1.5 3,002,398 + PGA1_c28670 0.74 +0.3 3,002,468 + PGA1_c28670 0.83 +0.4 3,002,468 + PGA1_c28670 0.83 +0.4 3,002,468 + PGA1_c28670 0.83 +2.1 3,002,473 + PGA1_c28670 0.84 +2.0 3,002,476 - PGA1_c28670 0.84 +1.9 3,002,481 - PGA1_c28670 0.85 +1.3 3,002,481 - PGA1_c28670 0.85 +1.7 3,002,481 - PGA1_c28670 0.85 +2.3 3,002,481 - PGA1_c28670 0.85 -1.0 3,002,481 - PGA1_c28670 0.85 +0.5 3,002,481 - PGA1_c28670 0.85 +0.1 3,002,481 - PGA1_c28670 0.85 +0.3 3,002,513 - PGA1_c28670 0.89 +2.0 3,002,528 + +0.1 3,002,536 + +0.8 3,002,544 - -0.2 3,002,547 + +2.3 3,002,547 + -2.6 3,002,547 + +0.6 3,002,547 + -1.6 3,002,555 - -1.9 3,002,573 - +0.3 3,002,584 + -2.3 3,002,611 + +1.4 3,002,613 + +0.7 3,002,625 + +0.1 3,002,628 - -0.7 3,002,633 - -1.7 3,002,638 + -0.2 3,002,670 + +1.4 3,002,692 - +0.4 3,002,692 - -2.0 3,002,698 + +0.1 3,002,698 + -2.5 3,002,698 + +1.1 3,002,705 + +3.2 3,002,705 + +2.2 3,002,705 + -0.5 3,002,706 - -1.5 3,002,713 - +2.0 3,002,713 - +2.6 3,002,713 - +1.9 3,002,713 - -0.4 3,002,713 - -1.2 3,002,715 + -1.9 3,002,762 - -0.7 3,002,762 - +0.4 3,002,795 + +0.8 3,002,894 + -2.5 3,002,902 - +0.8 3,002,924 + +1.3 3,003,004 + PGA1_c28680 0.13 +0.5 3,003,012 - PGA1_c28680 0.13 +2.1 3,003,012 - PGA1_c28680 0.13 +0.9 3,003,022 - PGA1_c28680 0.13 -2.6 3,003,130 + PGA1_c28680 0.17 -1.5 3,003,145 - PGA1_c28680 0.18 +2.5 3,003,176 + PGA1_c28680 0.19 +0.5 3,003,176 + PGA1_c28680 0.19 -1.5 3,003,176 + PGA1_c28680 0.19 -2.2 3,003,176 + PGA1_c28680 0.19 +1.4 3,003,178 + PGA1_c28680 0.19 -0.2 3,003,178 + PGA1_c28680 0.19 +1.1 3,003,184 - PGA1_c28680 0.20 +1.3 3,003,186 - PGA1_c28680 0.20 +1.2 3,003,192 + PGA1_c28680 0.20 +0.5 3,003,192 + PGA1_c28680 0.20 -0.9 3,003,197 + PGA1_c28680 0.20 -0.2 3,003,209 + PGA1_c28680 0.21 -1.0 3,003,210 - PGA1_c28680 0.21 -1.3 3,003,211 + PGA1_c28680 0.21 +1.0 3,003,216 + PGA1_c28680 0.21 -0.5 3,003,224 - PGA1_c28680 0.21 -2.3 3,003,264 + PGA1_c28680 0.23 +1.5 3,003,275 + PGA1_c28680 0.23 -2.0 3,003,287 + PGA1_c28680 0.24 +1.8 3,003,289 + PGA1_c28680 0.24 +1.1 3,003,289 + PGA1_c28680 0.24 +0.2 3,003,297 - PGA1_c28680 0.24 -2.2 3,003,297 - PGA1_c28680 0.24 +0.6 3,003,297 - PGA1_c28680 0.24 +1.1 3,003,312 - PGA1_c28680 0.25 +1.8 3,003,392 + PGA1_c28680 0.28 -0.7 3,003,436 + PGA1_c28680 0.29 -0.8 3,003,440 - PGA1_c28680 0.29 -1.1
Or see this region's nucleotide sequence