Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2680 and HP15_2681 are separated by 68 nucleotides HP15_2681 and HP15_2682 are separated by 51 nucleotides
HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193
_2680
HP15_2681: HP15_2681 - hypothetical protein, at 2,829,262 to 2,830,077
_2681
HP15_2682: HP15_2682 - TRAP dicarboxylate transporter- DctP subunit, at 2,830,129 to 2,831,094
_2682
Position (kb)
2829
2830
2831 Strain fitness (log2 ratio)
-1
0
1 at 2828.372 kb on - strand, within HP15_2680 at 2828.434 kb on - strand, within HP15_2680 at 2828.449 kb on - strand, within HP15_2680 at 2828.455 kb on + strand, within HP15_2680 at 2828.463 kb on - strand, within HP15_2680 at 2828.515 kb on - strand, within HP15_2680 at 2828.517 kb on - strand, within HP15_2680 at 2828.524 kb on - strand, within HP15_2680 at 2828.566 kb on + strand, within HP15_2680 at 2828.689 kb on - strand, within HP15_2680 at 2828.972 kb on + strand, within HP15_2680 at 2829.022 kb on + strand, within HP15_2680 at 2829.067 kb on + strand, within HP15_2680 at 2829.111 kb on + strand at 2829.309 kb on + strand at 2829.485 kb on - strand, within HP15_2681 at 2829.485 kb on - strand, within HP15_2681 at 2829.592 kb on - strand, within HP15_2681 at 2829.597 kb on - strand, within HP15_2681 at 2829.623 kb on + strand, within HP15_2681 at 2829.631 kb on - strand, within HP15_2681 at 2829.631 kb on - strand, within HP15_2681 at 2829.663 kb on + strand, within HP15_2681 at 2829.748 kb on + strand, within HP15_2681 at 2829.794 kb on - strand, within HP15_2681 at 2829.926 kb on + strand, within HP15_2681 at 2829.951 kb on + strand, within HP15_2681 at 2829.959 kb on - strand, within HP15_2681 at 2829.959 kb on - strand, within HP15_2681 at 2829.971 kb on + strand, within HP15_2681 at 2830.024 kb on - strand at 2830.024 kb on - strand at 2830.176 kb on + strand at 2830.184 kb on - strand at 2830.186 kb on - strand at 2830.216 kb on - strand at 2830.296 kb on + strand, within HP15_2682 at 2830.522 kb on + strand, within HP15_2682 at 2830.533 kb on + strand, within HP15_2682 at 2830.533 kb on + strand, within HP15_2682 at 2830.533 kb on + strand, within HP15_2682 at 2830.533 kb on + strand, within HP15_2682 at 2830.533 kb on + strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.541 kb on - strand, within HP15_2682 at 2830.543 kb on + strand, within HP15_2682 at 2830.558 kb on - strand, within HP15_2682 at 2830.564 kb on - strand, within HP15_2682 at 2830.574 kb on - strand, within HP15_2682 at 2830.597 kb on - strand, within HP15_2682 at 2830.656 kb on + strand, within HP15_2682 at 2830.759 kb on + strand, within HP15_2682 at 2830.800 kb on + strand, within HP15_2682 at 2831.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 2,828,372 - HP15_2680 0.12 -0.4 2,828,434 - HP15_2680 0.19 -0.3 2,828,449 - HP15_2680 0.20 +0.3 2,828,455 + HP15_2680 0.21 +0.1 2,828,463 - HP15_2680 0.22 +0.3 2,828,515 - HP15_2680 0.27 +0.0 2,828,517 - HP15_2680 0.27 +0.4 2,828,524 - HP15_2680 0.28 -0.1 2,828,566 + HP15_2680 0.33 +0.7 2,828,689 - HP15_2680 0.46 +1.5 2,828,972 + HP15_2680 0.76 +0.2 2,829,022 + HP15_2680 0.82 +0.6 2,829,067 + HP15_2680 0.86 +0.3 2,829,111 + -0.6 2,829,309 + +0.3 2,829,485 - HP15_2681 0.27 +0.5 2,829,485 - HP15_2681 0.27 +0.7 2,829,592 - HP15_2681 0.40 +0.1 2,829,597 - HP15_2681 0.41 +0.4 2,829,623 + HP15_2681 0.44 -0.0 2,829,631 - HP15_2681 0.45 +0.0 2,829,631 - HP15_2681 0.45 +0.5 2,829,663 + HP15_2681 0.49 +1.4 2,829,748 + HP15_2681 0.60 +0.0 2,829,794 - HP15_2681 0.65 +0.4 2,829,926 + HP15_2681 0.81 +0.1 2,829,951 + HP15_2681 0.84 -0.1 2,829,959 - HP15_2681 0.85 +0.2 2,829,959 - HP15_2681 0.85 +0.1 2,829,971 + HP15_2681 0.87 +0.0 2,830,024 - +0.2 2,830,024 - +0.2 2,830,176 + +0.4 2,830,184 - +0.3 2,830,186 - -0.3 2,830,216 - -0.0 2,830,296 + HP15_2682 0.17 +0.8 2,830,522 + HP15_2682 0.41 -0.0 2,830,533 + HP15_2682 0.42 +0.4 2,830,533 + HP15_2682 0.42 +0.0 2,830,533 + HP15_2682 0.42 +1.0 2,830,533 + HP15_2682 0.42 -0.2 2,830,533 + HP15_2682 0.42 +1.0 2,830,541 - HP15_2682 0.43 -0.1 2,830,541 - HP15_2682 0.43 +0.1 2,830,541 - HP15_2682 0.43 +0.5 2,830,541 - HP15_2682 0.43 +0.8 2,830,541 - HP15_2682 0.43 -0.3 2,830,541 - HP15_2682 0.43 -0.9 2,830,541 - HP15_2682 0.43 +0.3 2,830,541 - HP15_2682 0.43 -0.1 2,830,541 - HP15_2682 0.43 -0.1 2,830,543 + HP15_2682 0.43 -0.4 2,830,558 - HP15_2682 0.44 -0.1 2,830,564 - HP15_2682 0.45 +0.4 2,830,574 - HP15_2682 0.46 +0.1 2,830,597 - HP15_2682 0.48 -0.8 2,830,656 + HP15_2682 0.55 +0.3 2,830,759 + HP15_2682 0.65 +0.3 2,830,800 + HP15_2682 0.69 -0.2 2,831,069 + -0.4
Or see this region's nucleotide sequence