Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27530

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27520 and PGA1_c27530 overlap by 4 nucleotidesPGA1_c27530 and PGA1_c27540 overlap by 1 nucleotides PGA1_c27520: PGA1_c27520 - amine oxidoreductase-like protein, at 2,867,062 to 2,868,351 _c27520 PGA1_c27530: PGA1_c27530 - Uncharacterized conserved protein, at 2,868,348 to 2,869,100 _c27530 PGA1_c27540: PGA1_c27540 - putative cyclopropane-fatty-acyl-phospholipid synthase, at 2,869,100 to 2,870,257 _c27540 Position (kb) 2868 2869 2870Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2867.387 kb on + strand, within PGA1_c27520at 2867.395 kb on - strand, within PGA1_c27520at 2867.403 kb on + strand, within PGA1_c27520at 2867.446 kb on + strand, within PGA1_c27520at 2867.476 kb on + strand, within PGA1_c27520at 2867.476 kb on + strand, within PGA1_c27520at 2867.528 kb on - strand, within PGA1_c27520at 2867.596 kb on - strand, within PGA1_c27520at 2867.596 kb on - strand, within PGA1_c27520at 2867.596 kb on - strand, within PGA1_c27520at 2867.596 kb on - strand, within PGA1_c27520at 2867.610 kb on - strand, within PGA1_c27520at 2867.624 kb on + strand, within PGA1_c27520at 2867.664 kb on - strand, within PGA1_c27520at 2867.669 kb on - strand, within PGA1_c27520at 2867.674 kb on + strand, within PGA1_c27520at 2867.677 kb on - strand, within PGA1_c27520at 2867.682 kb on - strand, within PGA1_c27520at 2867.690 kb on - strand, within PGA1_c27520at 2867.695 kb on + strand, within PGA1_c27520at 2867.776 kb on + strand, within PGA1_c27520at 2867.786 kb on + strand, within PGA1_c27520at 2867.806 kb on + strand, within PGA1_c27520at 2867.853 kb on + strand, within PGA1_c27520at 2867.878 kb on - strand, within PGA1_c27520at 2868.026 kb on - strand, within PGA1_c27520at 2868.033 kb on - strand, within PGA1_c27520at 2868.050 kb on + strand, within PGA1_c27520at 2868.116 kb on + strand, within PGA1_c27520at 2868.116 kb on + strand, within PGA1_c27520at 2868.116 kb on + strand, within PGA1_c27520at 2868.116 kb on + strand, within PGA1_c27520at 2868.116 kb on + strand, within PGA1_c27520at 2868.124 kb on - strand, within PGA1_c27520at 2868.124 kb on - strand, within PGA1_c27520at 2868.124 kb on - strand, within PGA1_c27520at 2868.124 kb on - strand, within PGA1_c27520at 2868.124 kb on - strand, within PGA1_c27520at 2868.134 kb on - strand, within PGA1_c27520at 2868.181 kb on + strand, within PGA1_c27520at 2868.181 kb on + strand, within PGA1_c27520at 2868.181 kb on + strand, within PGA1_c27520at 2868.189 kb on - strand, within PGA1_c27520at 2868.191 kb on + strand, within PGA1_c27520at 2868.191 kb on + strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strandat 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.199 kb on - strand, within PGA1_c27520at 2868.237 kb on + strandat 2868.237 kb on + strandat 2868.299 kb on + strandat 2868.328 kb on - strandat 2868.335 kb on + strandat 2868.415 kb on + strandat 2868.426 kb on + strand, within PGA1_c27530at 2868.471 kb on + strand, within PGA1_c27530at 2868.549 kb on + strand, within PGA1_c27530at 2868.554 kb on + strand, within PGA1_c27530at 2868.557 kb on - strand, within PGA1_c27530at 2868.557 kb on - strand, within PGA1_c27530at 2868.559 kb on + strand, within PGA1_c27530at 2868.562 kb on - strand, within PGA1_c27530at 2868.562 kb on - strand, within PGA1_c27530at 2868.564 kb on + strand, within PGA1_c27530at 2868.564 kb on + strand, within PGA1_c27530at 2868.567 kb on - strand, within PGA1_c27530at 2868.569 kb on + strand, within PGA1_c27530at 2868.572 kb on - strand, within PGA1_c27530at 2868.585 kb on + strand, within PGA1_c27530at 2868.593 kb on - strand, within PGA1_c27530at 2868.593 kb on - strand, within PGA1_c27530at 2868.687 kb on + strand, within PGA1_c27530at 2868.690 kb on - strand, within PGA1_c27530at 2868.710 kb on + strand, within PGA1_c27530at 2868.737 kb on + strand, within PGA1_c27530at 2868.777 kb on - strand, within PGA1_c27530at 2868.788 kb on + strand, within PGA1_c27530at 2868.820 kb on + strand, within PGA1_c27530at 2868.922 kb on - strand, within PGA1_c27530at 2868.990 kb on + strand, within PGA1_c27530at 2868.993 kb on - strand, within PGA1_c27530at 2869.006 kb on + strand, within PGA1_c27530at 2869.006 kb on + strand, within PGA1_c27530at 2869.072 kb on - strandat 2869.077 kb on - strandat 2869.086 kb on + strandat 2869.086 kb on + strandat 2869.167 kb on + strandat 2869.167 kb on + strandat 2869.177 kb on + strandat 2869.184 kb on + strandat 2869.184 kb on + strandat 2869.280 kb on + strand, within PGA1_c27540at 2869.280 kb on + strand, within PGA1_c27540at 2869.312 kb on + strand, within PGA1_c27540at 2869.350 kb on - strand, within PGA1_c27540at 2869.365 kb on - strand, within PGA1_c27540at 2869.370 kb on - strand, within PGA1_c27540at 2869.379 kb on + strand, within PGA1_c27540at 2869.387 kb on - strand, within PGA1_c27540at 2869.387 kb on - strand, within PGA1_c27540at 2869.387 kb on - strand, within PGA1_c27540at 2869.450 kb on + strand, within PGA1_c27540at 2869.458 kb on - strand, within PGA1_c27540at 2869.479 kb on - strand, within PGA1_c27540at 2869.481 kb on + strand, within PGA1_c27540at 2869.539 kb on + strand, within PGA1_c27540at 2869.568 kb on + strand, within PGA1_c27540at 2869.576 kb on - strand, within PGA1_c27540at 2869.576 kb on - strand, within PGA1_c27540at 2869.576 kb on - strand, within PGA1_c27540at 2869.576 kb on - strand, within PGA1_c27540at 2869.611 kb on - strand, within PGA1_c27540at 2869.643 kb on - strand, within PGA1_c27540at 2869.679 kb on + strand, within PGA1_c27540at 2869.687 kb on - strand, within PGA1_c27540at 2869.690 kb on - strand, within PGA1_c27540at 2869.690 kb on - strand, within PGA1_c27540at 2869.703 kb on + strand, within PGA1_c27540at 2869.716 kb on + strand, within PGA1_c27540at 2869.716 kb on + strand, within PGA1_c27540at 2869.734 kb on - strand, within PGA1_c27540at 2869.849 kb on + strand, within PGA1_c27540at 2869.857 kb on - strand, within PGA1_c27540at 2869.857 kb on - strand, within PGA1_c27540at 2869.857 kb on - strand, within PGA1_c27540at 2869.857 kb on - strand, within PGA1_c27540at 2869.857 kb on - strand, within PGA1_c27540at 2869.925 kb on + strand, within PGA1_c27540at 2869.925 kb on + strand, within PGA1_c27540at 2869.933 kb on - strand, within PGA1_c27540at 2869.981 kb on + strand, within PGA1_c27540at 2870.000 kb on + strand, within PGA1_c27540at 2870.037 kb on - strand, within PGA1_c27540at 2870.060 kb on + strand, within PGA1_c27540at 2870.072 kb on + strand, within PGA1_c27540at 2870.085 kb on - strand, within PGA1_c27540at 2870.086 kb on - strand, within PGA1_c27540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,867,387 + PGA1_c27520 0.25 +2.2
2,867,395 - PGA1_c27520 0.26 +0.0
2,867,403 + PGA1_c27520 0.26 -1.2
2,867,446 + PGA1_c27520 0.30 -1.3
2,867,476 + PGA1_c27520 0.32 -1.4
2,867,476 + PGA1_c27520 0.32 +0.2
2,867,528 - PGA1_c27520 0.36 +0.9
2,867,596 - PGA1_c27520 0.41 +0.1
2,867,596 - PGA1_c27520 0.41 +0.5
2,867,596 - PGA1_c27520 0.41 -3.0
2,867,596 - PGA1_c27520 0.41 -0.6
2,867,610 - PGA1_c27520 0.42 -1.3
2,867,624 + PGA1_c27520 0.44 +2.2
2,867,664 - PGA1_c27520 0.47 +2.9
2,867,669 - PGA1_c27520 0.47 -1.4
2,867,674 + PGA1_c27520 0.47 +0.1
2,867,677 - PGA1_c27520 0.48 -2.7
2,867,682 - PGA1_c27520 0.48 +3.4
2,867,690 - PGA1_c27520 0.49 -2.0
2,867,695 + PGA1_c27520 0.49 +0.3
2,867,776 + PGA1_c27520 0.55 -2.2
2,867,786 + PGA1_c27520 0.56 -2.1
2,867,806 + PGA1_c27520 0.58 -3.6
2,867,853 + PGA1_c27520 0.61 +3.1
2,867,878 - PGA1_c27520 0.63 -1.2
2,868,026 - PGA1_c27520 0.75 +0.9
2,868,033 - PGA1_c27520 0.75 +2.4
2,868,050 + PGA1_c27520 0.77 -1.3
2,868,116 + PGA1_c27520 0.82 +1.2
2,868,116 + PGA1_c27520 0.82 -0.8
2,868,116 + PGA1_c27520 0.82 +5.3
2,868,116 + PGA1_c27520 0.82 -1.4
2,868,116 + PGA1_c27520 0.82 +0.7
2,868,124 - PGA1_c27520 0.82 -0.8
2,868,124 - PGA1_c27520 0.82 +0.5
2,868,124 - PGA1_c27520 0.82 -0.5
2,868,124 - PGA1_c27520 0.82 -1.4
2,868,124 - PGA1_c27520 0.82 -1.3
2,868,134 - PGA1_c27520 0.83 +0.4
2,868,181 + PGA1_c27520 0.87 -1.8
2,868,181 + PGA1_c27520 0.87 +1.6
2,868,181 + PGA1_c27520 0.87 +1.1
2,868,189 - PGA1_c27520 0.87 -1.6
2,868,191 + PGA1_c27520 0.88 +3.0
2,868,191 + PGA1_c27520 0.88 +1.4
2,868,199 - PGA1_c27520 0.88 -1.0
2,868,199 - PGA1_c27520 0.88 +0.3
2,868,199 - PGA1_c27520 0.88 -0.4
2,868,199 - PGA1_c27520 0.88 +0.3
2,868,199 - +2.2
2,868,199 - PGA1_c27520 0.88 +2.1
2,868,199 - PGA1_c27520 0.88 +1.9
2,868,199 - PGA1_c27520 0.88 +1.9
2,868,237 + +1.4
2,868,237 + -1.4
2,868,299 + +0.6
2,868,328 - +0.8
2,868,335 + +3.2
2,868,415 + -3.2
2,868,426 + PGA1_c27530 0.10 -1.4
2,868,471 + PGA1_c27530 0.16 -1.3
2,868,549 + PGA1_c27530 0.27 -1.0
2,868,554 + PGA1_c27530 0.27 +2.7
2,868,557 - PGA1_c27530 0.28 +2.1
2,868,557 - PGA1_c27530 0.28 -0.3
2,868,559 + PGA1_c27530 0.28 -0.2
2,868,562 - PGA1_c27530 0.28 -0.2
2,868,562 - PGA1_c27530 0.28 -2.2
2,868,564 + PGA1_c27530 0.29 +2.4
2,868,564 + PGA1_c27530 0.29 -1.3
2,868,567 - PGA1_c27530 0.29 -0.4
2,868,569 + PGA1_c27530 0.29 -0.2
2,868,572 - PGA1_c27530 0.30 -1.0
2,868,585 + PGA1_c27530 0.31 -3.3
2,868,593 - PGA1_c27530 0.33 -1.8
2,868,593 - PGA1_c27530 0.33 -1.4
2,868,687 + PGA1_c27530 0.45 -3.4
2,868,690 - PGA1_c27530 0.45 +1.9
2,868,710 + PGA1_c27530 0.48 -0.3
2,868,737 + PGA1_c27530 0.52 +1.4
2,868,777 - PGA1_c27530 0.57 -1.4
2,868,788 + PGA1_c27530 0.58 -1.6
2,868,820 + PGA1_c27530 0.63 -0.6
2,868,922 - PGA1_c27530 0.76 -0.4
2,868,990 + PGA1_c27530 0.85 -1.8
2,868,993 - PGA1_c27530 0.86 +1.2
2,869,006 + PGA1_c27530 0.87 -0.2
2,869,006 + PGA1_c27530 0.87 +1.6
2,869,072 - +0.6
2,869,077 - +1.6
2,869,086 + +1.4
2,869,086 + -2.8
2,869,167 + -2.8
2,869,167 + -1.3
2,869,177 + +0.6
2,869,184 + -0.8
2,869,184 + -0.4
2,869,280 + PGA1_c27540 0.16 -1.9
2,869,280 + PGA1_c27540 0.16 -2.2
2,869,312 + PGA1_c27540 0.18 -2.2
2,869,350 - PGA1_c27540 0.22 -2.1
2,869,365 - PGA1_c27540 0.23 -3.8
2,869,370 - PGA1_c27540 0.23 -0.7
2,869,379 + PGA1_c27540 0.24 -2.6
2,869,387 - PGA1_c27540 0.25 +1.2
2,869,387 - PGA1_c27540 0.25 -2.2
2,869,387 - PGA1_c27540 0.25 -0.3
2,869,450 + PGA1_c27540 0.30 -0.6
2,869,458 - PGA1_c27540 0.31 -2.7
2,869,479 - PGA1_c27540 0.33 -1.7
2,869,481 + PGA1_c27540 0.33 -2.1
2,869,539 + PGA1_c27540 0.38 -3.5
2,869,568 + PGA1_c27540 0.40 +0.1
2,869,576 - PGA1_c27540 0.41 +1.5
2,869,576 - PGA1_c27540 0.41 -1.4
2,869,576 - PGA1_c27540 0.41 +0.1
2,869,576 - PGA1_c27540 0.41 +0.9
2,869,611 - PGA1_c27540 0.44 -0.6
2,869,643 - PGA1_c27540 0.47 +0.3
2,869,679 + PGA1_c27540 0.50 -2.5
2,869,687 - PGA1_c27540 0.51 -0.8
2,869,690 - PGA1_c27540 0.51 -1.7
2,869,690 - PGA1_c27540 0.51 -0.9
2,869,703 + PGA1_c27540 0.52 -1.2
2,869,716 + PGA1_c27540 0.53 -0.8
2,869,716 + PGA1_c27540 0.53 -0.1
2,869,734 - PGA1_c27540 0.55 +1.7
2,869,849 + PGA1_c27540 0.65 +1.7
2,869,857 - PGA1_c27540 0.65 -1.2
2,869,857 - PGA1_c27540 0.65 +2.6
2,869,857 - PGA1_c27540 0.65 +4.0
2,869,857 - PGA1_c27540 0.65 +1.7
2,869,857 - PGA1_c27540 0.65 -2.6
2,869,925 + PGA1_c27540 0.71 -2.2
2,869,925 + PGA1_c27540 0.71 -2.2
2,869,933 - PGA1_c27540 0.72 +2.8
2,869,981 + PGA1_c27540 0.76 -1.0
2,870,000 + PGA1_c27540 0.78 +1.4
2,870,037 - PGA1_c27540 0.81 +1.8
2,870,060 + PGA1_c27540 0.83 -1.5
2,870,072 + PGA1_c27540 0.84 -0.6
2,870,085 - PGA1_c27540 0.85 -2.6
2,870,086 - PGA1_c27540 0.85 -2.6

Or see this region's nucleotide sequence