Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02790 and PGA1_c02800 are separated by 80 nucleotides PGA1_c02800 and PGA1_c02810 are separated by 43 nucleotides PGA1_c02810 and PGA1_c02820 are separated by 9 nucleotides PGA1_c02820 and PGA1_c02830 are separated by 195 nucleotides
PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686
_c02790
PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639
_c02800
PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909
_c02810
PGA1_c02820: PGA1_c02820 - putative transcriptional regulator, AraC family, at 271,919 to 272,575
_c02820
PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700
_c02830
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 269.692 kb on + strand at 269.693 kb on + strand at 269.698 kb on + strand at 269.698 kb on + strand at 269.701 kb on - strand at 269.753 kb on + strand at 269.770 kb on - strand at 269.851 kb on + strand at 270.009 kb on - strand, within PGA1_c02800 at 270.107 kb on - strand, within PGA1_c02800 at 270.115 kb on - strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.158 kb on - strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.260 kb on + strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.370 kb on - strand, within PGA1_c02800 at 270.463 kb on - strand, within PGA1_c02800 at 270.532 kb on + strand, within PGA1_c02800 at 270.606 kb on + strand at 270.606 kb on + strand at 270.617 kb on + strand at 270.632 kb on - strand at 270.725 kb on - strand at 270.733 kb on + strand at 270.741 kb on - strand at 270.741 kb on - strand at 270.771 kb on - strand at 270.785 kb on - strand at 270.839 kb on + strand, within PGA1_c02810 at 270.883 kb on - strand, within PGA1_c02810 at 270.989 kb on - strand, within PGA1_c02810 at 270.993 kb on - strand, within PGA1_c02810 at 271.016 kb on - strand, within PGA1_c02810 at 271.016 kb on - strand, within PGA1_c02810 at 271.023 kb on + strand, within PGA1_c02810 at 271.122 kb on + strand, within PGA1_c02810 at 271.144 kb on + strand, within PGA1_c02810 at 271.144 kb on + strand, within PGA1_c02810 at 271.151 kb on - strand, within PGA1_c02810 at 271.152 kb on - strand, within PGA1_c02810 at 271.168 kb on + strand, within PGA1_c02810 at 271.223 kb on - strand, within PGA1_c02810 at 271.273 kb on + strand, within PGA1_c02810 at 271.281 kb on - strand, within PGA1_c02810 at 271.282 kb on - strand, within PGA1_c02810 at 271.290 kb on + strand, within PGA1_c02810 at 271.303 kb on + strand, within PGA1_c02810 at 271.309 kb on + strand, within PGA1_c02810 at 271.385 kb on + strand, within PGA1_c02810 at 271.390 kb on - strand, within PGA1_c02810 at 271.452 kb on + strand, within PGA1_c02810 at 271.489 kb on + strand, within PGA1_c02810 at 271.496 kb on + strand, within PGA1_c02810 at 271.504 kb on - strand, within PGA1_c02810 at 271.504 kb on - strand, within PGA1_c02810 at 271.618 kb on - strand, within PGA1_c02810 at 271.670 kb on + strand, within PGA1_c02810 at 271.690 kb on + strand, within PGA1_c02810 at 271.692 kb on - strand, within PGA1_c02810 at 271.700 kb on - strand, within PGA1_c02810 at 271.706 kb on + strand, within PGA1_c02810 at 271.794 kb on + strand at 271.835 kb on + strand at 271.835 kb on + strand at 271.835 kb on + strand at 271.843 kb on - strand at 271.843 kb on - strand at 271.870 kb on + strand at 271.873 kb on - strand at 271.895 kb on + strand at 271.903 kb on + strand at 271.918 kb on - strand at 272.044 kb on + strand, within PGA1_c02820 at 272.052 kb on - strand, within PGA1_c02820 at 272.052 kb on - strand, within PGA1_c02820 at 272.133 kb on - strand, within PGA1_c02820 at 272.133 kb on - strand, within PGA1_c02820 at 272.150 kb on + strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.160 kb on + strand, within PGA1_c02820 at 272.160 kb on + strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.195 kb on - strand, within PGA1_c02820 at 272.254 kb on - strand, within PGA1_c02820 at 272.290 kb on + strand, within PGA1_c02820 at 272.300 kb on + strand, within PGA1_c02820 at 272.310 kb on - strand, within PGA1_c02820 at 272.339 kb on - strand, within PGA1_c02820 at 272.404 kb on + strand, within PGA1_c02820 at 272.404 kb on + strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.422 kb on - strand, within PGA1_c02820 at 272.428 kb on + strand, within PGA1_c02820 at 272.443 kb on - strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.493 kb on + strand, within PGA1_c02820 at 272.537 kb on + strand at 272.664 kb on - strand at 272.674 kb on + strand at 272.674 kb on + strand at 272.674 kb on + strand at 272.682 kb on - strand at 272.682 kb on - strand at 272.716 kb on + strand at 272.716 kb on + strand at 272.716 kb on + strand at 272.722 kb on + strand at 272.724 kb on - strand at 272.724 kb on - strand at 272.727 kb on + strand at 272.727 kb on + strand at 272.732 kb on + strand at 272.735 kb on - strand at 272.742 kb on + strand at 272.745 kb on - strand at 272.788 kb on - strand at 272.820 kb on + strand at 272.820 kb on + strand at 272.828 kb on - strand at 272.830 kb on + strand at 272.830 kb on + strand at 272.838 kb on - strand at 272.838 kb on - strand at 272.850 kb on + strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 269,692 + -0.7 269,693 + +1.5 269,698 + +1.9 269,698 + +1.6 269,701 - +1.5 269,753 + +2.0 269,770 - -2.8 269,851 + -0.3 270,009 - PGA1_c02800 0.28 -0.2 270,107 - PGA1_c02800 0.39 +0.7 270,115 - PGA1_c02800 0.40 -0.2 270,140 + PGA1_c02800 0.43 -0.5 270,140 + PGA1_c02800 0.43 -2.2 270,140 + PGA1_c02800 0.43 +0.6 270,148 - PGA1_c02800 0.44 +1.5 270,148 - PGA1_c02800 0.44 -1.7 270,148 - PGA1_c02800 0.44 -1.0 270,158 - PGA1_c02800 0.45 +1.2 270,189 + PGA1_c02800 0.48 -3.4 270,189 + PGA1_c02800 0.48 +0.3 270,197 - PGA1_c02800 0.49 +0.9 270,197 - PGA1_c02800 0.49 -1.1 270,260 + PGA1_c02800 0.56 -1.3 270,294 - PGA1_c02800 0.60 +0.0 270,294 - PGA1_c02800 0.60 -1.8 270,370 - PGA1_c02800 0.69 -1.3 270,463 - PGA1_c02800 0.80 +0.7 270,532 + PGA1_c02800 0.88 -0.4 270,606 + +3.3 270,606 + +1.5 270,617 + -1.1 270,632 - -2.8 270,725 - +1.9 270,733 + -2.1 270,741 - +1.5 270,741 - -0.6 270,771 - -1.0 270,785 - -1.1 270,839 + PGA1_c02810 0.13 +1.8 270,883 - PGA1_c02810 0.16 +1.7 270,989 - PGA1_c02810 0.25 -1.8 270,993 - PGA1_c02810 0.25 -0.4 271,016 - PGA1_c02810 0.27 +0.8 271,016 - PGA1_c02810 0.27 -2.5 271,023 + PGA1_c02810 0.28 -0.3 271,122 + PGA1_c02810 0.36 +1.3 271,144 + PGA1_c02810 0.38 +1.2 271,144 + PGA1_c02810 0.38 -1.8 271,151 - PGA1_c02810 0.38 -1.0 271,152 - PGA1_c02810 0.38 -1.0 271,168 + PGA1_c02810 0.40 -2.5 271,223 - PGA1_c02810 0.44 +0.7 271,273 + PGA1_c02810 0.48 +0.8 271,281 - PGA1_c02810 0.49 -1.0 271,282 - PGA1_c02810 0.49 -0.1 271,290 + PGA1_c02810 0.49 +3.8 271,303 + PGA1_c02810 0.51 +1.3 271,309 + PGA1_c02810 0.51 -1.5 271,385 + PGA1_c02810 0.57 -2.4 271,390 - PGA1_c02810 0.58 +1.2 271,452 + PGA1_c02810 0.63 -0.6 271,489 + PGA1_c02810 0.66 -0.1 271,496 + PGA1_c02810 0.66 -0.0 271,504 - PGA1_c02810 0.67 -1.5 271,504 - PGA1_c02810 0.67 +0.2 271,618 - PGA1_c02810 0.76 -2.4 271,670 + PGA1_c02810 0.80 +1.6 271,690 + PGA1_c02810 0.82 -0.1 271,692 - PGA1_c02810 0.82 -2.8 271,700 - PGA1_c02810 0.83 -1.5 271,706 + PGA1_c02810 0.83 +0.4 271,794 + -2.1 271,835 + +0.1 271,835 + +0.5 271,835 + -2.0 271,843 - -1.7 271,843 - +1.7 271,870 + +0.2 271,873 - -1.3 271,895 + +1.0 271,903 + -0.3 271,918 - +2.3 272,044 + PGA1_c02820 0.19 +1.2 272,052 - PGA1_c02820 0.20 -0.6 272,052 - PGA1_c02820 0.20 +1.3 272,133 - PGA1_c02820 0.33 -0.8 272,133 - PGA1_c02820 0.33 +1.2 272,150 + PGA1_c02820 0.35 +2.4 272,158 - PGA1_c02820 0.36 -0.3 272,158 - PGA1_c02820 0.36 +1.0 272,158 - PGA1_c02820 0.36 -2.4 272,158 - PGA1_c02820 0.36 -1.9 272,160 + PGA1_c02820 0.37 -1.4 272,160 + PGA1_c02820 0.37 +1.8 272,168 - PGA1_c02820 0.38 +1.5 272,168 - PGA1_c02820 0.38 -2.0 272,168 - PGA1_c02820 0.38 -1.6 272,195 - PGA1_c02820 0.42 -2.5 272,254 - PGA1_c02820 0.51 +0.7 272,290 + PGA1_c02820 0.56 +2.0 272,300 + PGA1_c02820 0.58 +1.4 272,310 - PGA1_c02820 0.60 +2.8 272,339 - PGA1_c02820 0.64 -0.9 272,404 + PGA1_c02820 0.74 -1.0 272,404 + PGA1_c02820 0.74 -2.2 272,412 - PGA1_c02820 0.75 +3.4 272,412 - PGA1_c02820 0.75 +2.7 272,412 - PGA1_c02820 0.75 +0.3 272,414 + PGA1_c02820 0.75 -1.4 272,414 + PGA1_c02820 0.75 -0.6 272,414 + PGA1_c02820 0.75 -2.6 272,422 - PGA1_c02820 0.77 -2.2 272,428 + PGA1_c02820 0.77 -1.8 272,443 - PGA1_c02820 0.80 -0.3 272,470 + PGA1_c02820 0.84 -3.3 272,470 + PGA1_c02820 0.84 +0.6 272,470 + PGA1_c02820 0.84 -2.0 272,470 + PGA1_c02820 0.84 -1.7 272,470 + PGA1_c02820 0.84 -0.6 272,470 + PGA1_c02820 0.84 -1.0 272,470 + PGA1_c02820 0.84 -1.0 272,470 + PGA1_c02820 0.84 +1.8 272,470 + PGA1_c02820 0.84 -1.4 272,470 + PGA1_c02820 0.84 +2.1 272,478 - PGA1_c02820 0.85 +0.1 272,478 - PGA1_c02820 0.85 +2.2 272,478 - PGA1_c02820 0.85 -0.4 272,478 - PGA1_c02820 0.85 -0.2 272,478 - PGA1_c02820 0.85 +1.1 272,478 - PGA1_c02820 0.85 -0.4 272,478 - PGA1_c02820 0.85 -2.2 272,478 - PGA1_c02820 0.85 +0.3 272,478 - PGA1_c02820 0.85 -2.8 272,478 - PGA1_c02820 0.85 +2.2 272,478 - PGA1_c02820 0.85 +0.7 272,478 - PGA1_c02820 0.85 +0.5 272,478 - PGA1_c02820 0.85 +0.9 272,478 - PGA1_c02820 0.85 +2.0 272,493 + PGA1_c02820 0.87 +0.3 272,537 + +0.8 272,664 - +0.9 272,674 + +0.7 272,674 + +0.6 272,674 + +0.5 272,682 - -0.9 272,682 - -1.8 272,716 + -1.1 272,716 + +0.0 272,716 + -2.1 272,722 + -2.4 272,724 - +0.3 272,724 - +1.6 272,727 + -1.8 272,727 + -2.3 272,732 + +1.3 272,735 - +0.9 272,742 + -2.6 272,745 - -0.4 272,788 - -0.1 272,820 + +0.6 272,820 + +1.1 272,828 - -1.0 272,830 + -2.6 272,830 + -2.1 272,838 - -1.7 272,838 - +0.3 272,850 + +1.1 272,858 - -0.1 272,858 - -2.3 272,858 - -1.3 272,858 - -2.6 272,858 - +0.9 272,858 - -1.1
Or see this region's nucleotide sequence