Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27210

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27200 and PGA1_c27210 are separated by 175 nucleotidesPGA1_c27210 and PGA1_c27220 overlap by 4 nucleotides PGA1_c27200: PGA1_c27200 - alcohol dehydrogenase, iron containing, at 2,834,427 to 2,835,572 _c27200 PGA1_c27210: PGA1_c27210 - metal dependent phosphohydrolases-like protein, at 2,835,748 to 2,836,365 _c27210 PGA1_c27220: PGA1_c27220 - putative gamma-butyrobetaine dioxygenase, at 2,836,362 to 2,837,507 _c27220 Position (kb) 2835 2836 2837Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2835.525 kb on + strandat 2835.625 kb on + strandat 2835.625 kb on + strandat 2835.667 kb on + strandat 2835.667 kb on + strandat 2835.675 kb on - strandat 2835.675 kb on - strandat 2835.677 kb on + strandat 2835.685 kb on - strandat 2835.685 kb on - strandat 2835.685 kb on - strandat 2835.694 kb on + strandat 2835.702 kb on + strandat 2835.718 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.763 kb on - strandat 2835.763 kb on - strandat 2835.763 kb on - strandat 2835.827 kb on + strand, within PGA1_c27210at 2835.835 kb on - strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.848 kb on - strand, within PGA1_c27210at 2835.930 kb on + strand, within PGA1_c27210at 2835.938 kb on - strand, within PGA1_c27210at 2836.147 kb on + strand, within PGA1_c27210at 2836.163 kb on + strand, within PGA1_c27210at 2836.255 kb on - strand, within PGA1_c27210at 2836.276 kb on + strand, within PGA1_c27210at 2836.386 kb on - strandat 2836.406 kb on + strandat 2836.411 kb on + strandat 2836.440 kb on + strandat 2836.463 kb on + strandat 2836.463 kb on + strandat 2836.481 kb on - strand, within PGA1_c27220at 2836.490 kb on + strand, within PGA1_c27220at 2836.515 kb on + strand, within PGA1_c27220at 2836.516 kb on - strand, within PGA1_c27220at 2836.591 kb on + strand, within PGA1_c27220at 2836.591 kb on + strand, within PGA1_c27220at 2836.591 kb on + strand, within PGA1_c27220at 2836.599 kb on - strand, within PGA1_c27220at 2836.599 kb on - strand, within PGA1_c27220at 2836.631 kb on - strand, within PGA1_c27220at 2836.632 kb on - strand, within PGA1_c27220at 2836.722 kb on - strand, within PGA1_c27220at 2836.777 kb on - strand, within PGA1_c27220at 2836.785 kb on + strand, within PGA1_c27220at 2836.874 kb on - strand, within PGA1_c27220at 2836.886 kb on + strand, within PGA1_c27220at 2836.920 kb on + strand, within PGA1_c27220at 2836.920 kb on - strand, within PGA1_c27220at 2836.933 kb on - strand, within PGA1_c27220at 2836.948 kb on - strand, within PGA1_c27220at 2836.955 kb on + strand, within PGA1_c27220at 2836.971 kb on - strand, within PGA1_c27220at 2836.981 kb on - strand, within PGA1_c27220at 2837.008 kb on + strand, within PGA1_c27220at 2837.008 kb on + strand, within PGA1_c27220at 2837.016 kb on - strand, within PGA1_c27220at 2837.064 kb on - strand, within PGA1_c27220at 2837.119 kb on - strand, within PGA1_c27220at 2837.171 kb on - strand, within PGA1_c27220at 2837.190 kb on - strand, within PGA1_c27220at 2837.195 kb on + strand, within PGA1_c27220at 2837.203 kb on - strand, within PGA1_c27220at 2837.228 kb on + strand, within PGA1_c27220at 2837.235 kb on + strand, within PGA1_c27220at 2837.243 kb on - strand, within PGA1_c27220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,835,525 + -1.0
2,835,625 + -0.2
2,835,625 + +0.1
2,835,667 + +1.1
2,835,667 + +1.5
2,835,675 - -3.6
2,835,675 - -1.0
2,835,677 + +2.0
2,835,685 - -0.8
2,835,685 - -3.1
2,835,685 - -3.0
2,835,694 + +0.9
2,835,702 + -1.9
2,835,718 + -2.7
2,835,755 + +0.2
2,835,755 + -1.2
2,835,755 + +2.8
2,835,755 + +3.6
2,835,763 - -2.3
2,835,763 - -0.3
2,835,763 - -1.5
2,835,827 + PGA1_c27210 0.13 -0.3
2,835,835 - PGA1_c27210 0.14 +2.9
2,835,840 + PGA1_c27210 0.15 +1.2
2,835,840 + PGA1_c27210 0.15 -2.1
2,835,840 + PGA1_c27210 0.15 +0.5
2,835,848 - PGA1_c27210 0.16 +2.8
2,835,930 + PGA1_c27210 0.29 +1.8
2,835,938 - PGA1_c27210 0.31 +0.3
2,836,147 + PGA1_c27210 0.65 +5.1
2,836,163 + PGA1_c27210 0.67 -0.1
2,836,255 - PGA1_c27210 0.82 +1.4
2,836,276 + PGA1_c27210 0.85 -1.5
2,836,386 - +1.5
2,836,406 + -2.9
2,836,411 + +1.0
2,836,440 + +2.0
2,836,463 + +0.0
2,836,463 + -1.7
2,836,481 - PGA1_c27220 0.10 +1.1
2,836,490 + PGA1_c27220 0.11 -1.7
2,836,515 + PGA1_c27220 0.13 +1.2
2,836,516 - PGA1_c27220 0.13 -1.3
2,836,591 + PGA1_c27220 0.20 -1.5
2,836,591 + PGA1_c27220 0.20 -1.7
2,836,591 + PGA1_c27220 0.20 -2.0
2,836,599 - PGA1_c27220 0.21 -1.5
2,836,599 - PGA1_c27220 0.21 -1.2
2,836,631 - PGA1_c27220 0.23 +1.6
2,836,632 - PGA1_c27220 0.24 -1.0
2,836,722 - PGA1_c27220 0.31 -2.2
2,836,777 - PGA1_c27220 0.36 -2.0
2,836,785 + PGA1_c27220 0.37 +1.3
2,836,874 - PGA1_c27220 0.45 +3.7
2,836,886 + PGA1_c27220 0.46 -1.1
2,836,920 + PGA1_c27220 0.49 -0.9
2,836,920 - PGA1_c27220 0.49 -0.1
2,836,933 - PGA1_c27220 0.50 +0.1
2,836,948 - PGA1_c27220 0.51 -2.7
2,836,955 + PGA1_c27220 0.52 -3.0
2,836,971 - PGA1_c27220 0.53 -0.9
2,836,981 - PGA1_c27220 0.54 +2.0
2,837,008 + PGA1_c27220 0.56 -1.3
2,837,008 + PGA1_c27220 0.56 -0.5
2,837,016 - PGA1_c27220 0.57 -2.1
2,837,064 - PGA1_c27220 0.61 +1.4
2,837,119 - PGA1_c27220 0.66 +2.1
2,837,171 - PGA1_c27220 0.71 +2.3
2,837,190 - PGA1_c27220 0.72 +0.9
2,837,195 + PGA1_c27220 0.73 -0.9
2,837,203 - PGA1_c27220 0.73 +0.4
2,837,228 + PGA1_c27220 0.76 -1.6
2,837,235 + PGA1_c27220 0.76 +0.7
2,837,243 - PGA1_c27220 0.77 -1.5

Or see this region's nucleotide sequence