Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27060 and PGA1_c27070 are separated by 1 nucleotides PGA1_c27070 and PGA1_c27080 are separated by 286 nucleotides PGA1_c27080 and PGA1_c27100 are separated by 136 nucleotides PGA1_c27100 and PGA1_c27110 are separated by 193 nucleotides
PGA1_c27060: PGA1_c27060 - putative signal transduction histidine kinase, at 2,821,442 to 2,823,220
_c27060
PGA1_c27070: PGA1_c27070 - RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup), at 2,823,222 to 2,823,767
_c27070
PGA1_c27080: PGA1_c27080 - response regulator receiver protein, at 2,824,054 to 2,824,869
_c27080
PGA1_c27100: PGA1_c27100 - putative ferritin, at 2,825,006 to 2,825,503
_c27100
PGA1_c27110: PGA1_c27110 - Protein of unknown function (DUF1328)., at 2,825,697 to 2,825,861
_c27110
Position (kb)
2824
2825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2823.213 kb on + strand at 2823.295 kb on + strand, within PGA1_c27070 at 2823.303 kb on - strand, within PGA1_c27070 at 2823.339 kb on + strand, within PGA1_c27070 at 2823.347 kb on - strand, within PGA1_c27070 at 2823.354 kb on + strand, within PGA1_c27070 at 2823.354 kb on + strand, within PGA1_c27070 at 2823.362 kb on - strand, within PGA1_c27070 at 2823.444 kb on - strand, within PGA1_c27070 at 2823.512 kb on + strand, within PGA1_c27070 at 2823.568 kb on + strand, within PGA1_c27070 at 2823.571 kb on + strand, within PGA1_c27070 at 2823.598 kb on + strand, within PGA1_c27070 at 2823.651 kb on - strand, within PGA1_c27070 at 2823.651 kb on - strand, within PGA1_c27070 at 2823.651 kb on - strand, within PGA1_c27070 at 2823.657 kb on - strand, within PGA1_c27070 at 2823.666 kb on - strand, within PGA1_c27070 at 2823.676 kb on - strand, within PGA1_c27070 at 2823.681 kb on + strand, within PGA1_c27070 at 2823.727 kb on + strand at 2823.727 kb on + strand at 2823.735 kb on - strand at 2823.735 kb on - strand at 2823.735 kb on - strand at 2823.735 kb on - strand at 2823.751 kb on + strand at 2823.804 kb on + strand at 2823.812 kb on - strand at 2823.818 kb on + strand at 2823.818 kb on + strand at 2823.818 kb on + strand at 2823.818 kb on + strand at 2823.818 kb on + strand at 2823.818 kb on + strand at 2823.826 kb on - strand at 2823.826 kb on - strand at 2823.826 kb on - strand at 2823.860 kb on + strand at 2823.878 kb on + strand at 2823.930 kb on + strand at 2824.001 kb on + strand at 2824.001 kb on + strand at 2824.001 kb on + strand at 2824.003 kb on + strand at 2824.003 kb on + strand at 2824.009 kb on - strand at 2824.009 kb on - strand at 2824.011 kb on - strand at 2824.056 kb on - strand at 2824.102 kb on - strand at 2824.102 kb on - strand at 2824.117 kb on + strand at 2824.153 kb on + strand, within PGA1_c27080 at 2824.160 kb on + strand, within PGA1_c27080 at 2824.168 kb on - strand, within PGA1_c27080 at 2824.168 kb on - strand, within PGA1_c27080 at 2824.183 kb on - strand, within PGA1_c27080 at 2824.191 kb on + strand, within PGA1_c27080 at 2824.340 kb on + strand, within PGA1_c27080 at 2824.340 kb on + strand, within PGA1_c27080 at 2824.355 kb on + strand, within PGA1_c27080 at 2824.357 kb on + strand, within PGA1_c27080 at 2824.371 kb on + strand, within PGA1_c27080 at 2824.371 kb on - strand, within PGA1_c27080 at 2824.397 kb on + strand, within PGA1_c27080 at 2824.405 kb on - strand, within PGA1_c27080 at 2824.407 kb on - strand, within PGA1_c27080 at 2824.430 kb on - strand, within PGA1_c27080 at 2824.447 kb on - strand, within PGA1_c27080 at 2824.449 kb on + strand, within PGA1_c27080 at 2824.457 kb on - strand, within PGA1_c27080 at 2824.516 kb on + strand, within PGA1_c27080 at 2824.524 kb on - strand, within PGA1_c27080 at 2824.552 kb on + strand, within PGA1_c27080 at 2824.560 kb on - strand, within PGA1_c27080 at 2824.573 kb on + strand, within PGA1_c27080 at 2824.683 kb on + strand, within PGA1_c27080 at 2824.691 kb on - strand, within PGA1_c27080 at 2824.691 kb on - strand, within PGA1_c27080 at 2824.710 kb on - strand, within PGA1_c27080 at 2824.712 kb on + strand, within PGA1_c27080 at 2824.741 kb on - strand, within PGA1_c27080 at 2824.764 kb on + strand, within PGA1_c27080 at 2824.791 kb on + strand at 2824.791 kb on + strand at 2824.791 kb on + strand at 2824.799 kb on - strand at 2824.799 kb on - strand at 2824.799 kb on - strand at 2824.799 kb on - strand at 2824.812 kb on - strand at 2824.822 kb on - strand at 2824.827 kb on - strand at 2824.827 kb on - strand at 2824.950 kb on - strand at 2824.950 kb on - strand at 2825.003 kb on + strand at 2825.003 kb on + strand at 2825.011 kb on - strand at 2825.011 kb on - strand at 2825.011 kb on - strand at 2825.012 kb on + strand at 2825.069 kb on + strand, within PGA1_c27100 at 2825.069 kb on + strand, within PGA1_c27100 at 2825.074 kb on + strand, within PGA1_c27100 at 2825.077 kb on - strand, within PGA1_c27100 at 2825.103 kb on + strand, within PGA1_c27100 at 2825.143 kb on + strand, within PGA1_c27100 at 2825.163 kb on - strand, within PGA1_c27100 at 2825.170 kb on - strand, within PGA1_c27100 at 2825.170 kb on - strand, within PGA1_c27100 at 2825.216 kb on - strand, within PGA1_c27100 at 2825.366 kb on + strand, within PGA1_c27100 at 2825.401 kb on - strand, within PGA1_c27100 at 2825.414 kb on - strand, within PGA1_c27100 at 2825.485 kb on - strand at 2825.496 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.557 kb on - strand at 2825.659 kb on + strand at 2825.675 kb on - strand at 2825.688 kb on - strand at 2825.704 kb on + strand at 2825.741 kb on + strand, within PGA1_c27110 at 2825.763 kb on + strand, within PGA1_c27110 at 2825.770 kb on - strand, within PGA1_c27110 at 2825.784 kb on + strand, within PGA1_c27110 at 2825.813 kb on + strand, within PGA1_c27110 at 2825.813 kb on + strand, within PGA1_c27110 at 2825.825 kb on - strand, within PGA1_c27110 at 2825.838 kb on + strand, within PGA1_c27110 at 2825.846 kb on - strand at 2825.846 kb on - strand at 2825.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,823,213 + -0.8 2,823,295 + PGA1_c27070 0.13 -0.4 2,823,303 - PGA1_c27070 0.15 +0.2 2,823,339 + PGA1_c27070 0.21 +0.3 2,823,347 - PGA1_c27070 0.23 +0.8 2,823,354 + PGA1_c27070 0.24 +2.7 2,823,354 + PGA1_c27070 0.24 -2.2 2,823,362 - PGA1_c27070 0.26 -0.2 2,823,444 - PGA1_c27070 0.41 +0.2 2,823,512 + PGA1_c27070 0.53 +1.5 2,823,568 + PGA1_c27070 0.63 +2.3 2,823,571 + PGA1_c27070 0.64 -1.1 2,823,598 + PGA1_c27070 0.69 -0.6 2,823,651 - PGA1_c27070 0.79 +0.2 2,823,651 - PGA1_c27070 0.79 +1.4 2,823,651 - PGA1_c27070 0.79 -1.7 2,823,657 - PGA1_c27070 0.80 -1.6 2,823,666 - PGA1_c27070 0.81 -1.1 2,823,676 - PGA1_c27070 0.83 +0.2 2,823,681 + PGA1_c27070 0.84 -0.9 2,823,727 + +3.6 2,823,727 + -0.9 2,823,735 - +3.1 2,823,735 - +1.1 2,823,735 - +0.8 2,823,735 - -1.1 2,823,751 + +1.1 2,823,804 + -2.3 2,823,812 - -0.5 2,823,818 + +0.5 2,823,818 + -1.4 2,823,818 + +0.1 2,823,818 + +0.6 2,823,818 + +0.0 2,823,818 + +0.1 2,823,826 - +2.8 2,823,826 - +1.2 2,823,826 - -1.9 2,823,860 + +1.1 2,823,878 + -0.5 2,823,930 + -1.1 2,824,001 + +3.1 2,824,001 + +1.1 2,824,001 + -0.3 2,824,003 + +3.5 2,824,003 + +0.5 2,824,009 - +2.3 2,824,009 - +2.1 2,824,011 - +0.8 2,824,056 - -1.1 2,824,102 - +0.5 2,824,102 - +0.8 2,824,117 + -0.8 2,824,153 + PGA1_c27080 0.12 +1.8 2,824,160 + PGA1_c27080 0.13 -2.3 2,824,168 - PGA1_c27080 0.14 +0.1 2,824,168 - PGA1_c27080 0.14 -1.4 2,824,183 - PGA1_c27080 0.16 +1.9 2,824,191 + PGA1_c27080 0.17 +2.1 2,824,340 + PGA1_c27080 0.35 +0.5 2,824,340 + PGA1_c27080 0.35 +0.3 2,824,355 + PGA1_c27080 0.37 -0.4 2,824,357 + PGA1_c27080 0.37 +1.1 2,824,371 + PGA1_c27080 0.39 -0.2 2,824,371 - PGA1_c27080 0.39 +1.9 2,824,397 + PGA1_c27080 0.42 +0.5 2,824,405 - PGA1_c27080 0.43 -0.2 2,824,407 - PGA1_c27080 0.43 +1.5 2,824,430 - PGA1_c27080 0.46 -0.7 2,824,447 - PGA1_c27080 0.48 -0.3 2,824,449 + PGA1_c27080 0.48 -1.8 2,824,457 - PGA1_c27080 0.49 +1.6 2,824,516 + PGA1_c27080 0.57 +0.1 2,824,524 - PGA1_c27080 0.58 -1.8 2,824,552 + PGA1_c27080 0.61 +0.5 2,824,560 - PGA1_c27080 0.62 +0.6 2,824,573 + PGA1_c27080 0.64 +3.6 2,824,683 + PGA1_c27080 0.77 -0.5 2,824,691 - PGA1_c27080 0.78 -3.0 2,824,691 - PGA1_c27080 0.78 +0.5 2,824,710 - PGA1_c27080 0.80 +2.3 2,824,712 + PGA1_c27080 0.81 +1.1 2,824,741 - PGA1_c27080 0.84 +0.6 2,824,764 + PGA1_c27080 0.87 +1.0 2,824,791 + -3.6 2,824,791 + +0.6 2,824,791 + -2.1 2,824,799 - +0.8 2,824,799 - +1.0 2,824,799 - +0.1 2,824,799 - +0.3 2,824,812 - +3.3 2,824,822 - +0.8 2,824,827 - -1.1 2,824,827 - +1.7 2,824,950 - -0.5 2,824,950 - -1.3 2,825,003 + +0.4 2,825,003 + +1.7 2,825,011 - +0.1 2,825,011 - -2.3 2,825,011 - +2.6 2,825,012 + -0.4 2,825,069 + PGA1_c27100 0.13 +0.0 2,825,069 + PGA1_c27100 0.13 -1.7 2,825,074 + PGA1_c27100 0.14 -0.7 2,825,077 - PGA1_c27100 0.14 +1.9 2,825,103 + PGA1_c27100 0.19 +0.1 2,825,143 + PGA1_c27100 0.28 +1.5 2,825,163 - PGA1_c27100 0.32 +2.6 2,825,170 - PGA1_c27100 0.33 +0.9 2,825,170 - PGA1_c27100 0.33 +2.8 2,825,216 - PGA1_c27100 0.42 +2.1 2,825,366 + PGA1_c27100 0.72 +3.0 2,825,401 - PGA1_c27100 0.79 -1.8 2,825,414 - PGA1_c27100 0.82 +0.7 2,825,485 - -0.2 2,825,496 + -0.9 2,825,537 + +0.6 2,825,537 + -3.3 2,825,537 + -0.2 2,825,537 + +0.4 2,825,545 - +2.7 2,825,545 - -1.2 2,825,545 - -0.9 2,825,545 - -0.8 2,825,545 - +1.1 2,825,545 - -1.1 2,825,545 - +0.3 2,825,557 - -2.1 2,825,659 + -0.5 2,825,675 - -2.5 2,825,688 - +0.5 2,825,704 + -0.9 2,825,741 + PGA1_c27110 0.27 -0.9 2,825,763 + PGA1_c27110 0.40 +0.3 2,825,770 - PGA1_c27110 0.44 +0.1 2,825,784 + PGA1_c27110 0.53 -0.9 2,825,813 + PGA1_c27110 0.70 -0.9 2,825,813 + PGA1_c27110 0.70 -1.7 2,825,825 - PGA1_c27110 0.78 +3.5 2,825,838 + PGA1_c27110 0.85 +0.5 2,825,846 - -0.5 2,825,846 - +0.9 2,825,856 - -0.2
Or see this region's nucleotide sequence