Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26920

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c26910 and PGA1_c26920 overlap by 11 nucleotidesPGA1_c26920 and PGA1_c26930 are separated by 1 nucleotidesPGA1_c26930 and PGA1_c26940 overlap by 4 nucleotides PGA1_c26910: PGA1_c26910 - ABC transporter, ATP-binding protein, at 2,807,814 to 2,809,382 _c26910 PGA1_c26920: PGA1_c26920 - ABC transporter, permease protein, at 2,809,372 to 2,810,421 _c26920 PGA1_c26930: PGA1_c26930 - ABC transporter, permease protein, at 2,810,423 to 2,811,367 _c26930 PGA1_c26940: PGA1_c26940 - cytosine deaminase CodA, at 2,811,364 to 2,812,647 _c26940 Position (kb) 2809 2810 2811Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2808.410 kb on - strand, within PGA1_c26910at 2808.410 kb on - strand, within PGA1_c26910at 2808.411 kb on - strand, within PGA1_c26910at 2808.436 kb on + strand, within PGA1_c26910at 2808.444 kb on - strand, within PGA1_c26910at 2808.601 kb on + strand, within PGA1_c26910at 2808.601 kb on + strand, within PGA1_c26910at 2808.603 kb on - strand, within PGA1_c26910at 2808.609 kb on - strand, within PGA1_c26910at 2808.690 kb on + strand, within PGA1_c26910at 2808.740 kb on + strand, within PGA1_c26910at 2808.744 kb on + strand, within PGA1_c26910at 2808.757 kb on - strand, within PGA1_c26910at 2808.796 kb on - strand, within PGA1_c26910at 2808.829 kb on - strand, within PGA1_c26910at 2808.866 kb on + strand, within PGA1_c26910at 2808.960 kb on - strand, within PGA1_c26910at 2809.015 kb on + strand, within PGA1_c26910at 2809.226 kb on - strandat 2809.254 kb on + strandat 2809.273 kb on - strandat 2809.274 kb on + strandat 2809.282 kb on - strandat 2809.282 kb on - strandat 2809.284 kb on + strandat 2809.305 kb on - strandat 2809.562 kb on + strand, within PGA1_c26920at 2809.565 kb on - strand, within PGA1_c26920at 2809.652 kb on - strand, within PGA1_c26920at 2809.717 kb on + strand, within PGA1_c26920at 2809.761 kb on + strand, within PGA1_c26920at 2809.774 kb on - strand, within PGA1_c26920at 2809.797 kb on + strand, within PGA1_c26920at 2809.797 kb on + strand, within PGA1_c26920at 2809.983 kb on + strand, within PGA1_c26920at 2810.021 kb on - strand, within PGA1_c26920at 2810.023 kb on + strand, within PGA1_c26920at 2810.028 kb on + strand, within PGA1_c26920at 2810.031 kb on - strand, within PGA1_c26920at 2810.058 kb on + strand, within PGA1_c26920at 2810.191 kb on - strand, within PGA1_c26920at 2810.274 kb on + strand, within PGA1_c26920at 2810.306 kb on + strand, within PGA1_c26920at 2810.306 kb on + strand, within PGA1_c26920at 2810.314 kb on - strand, within PGA1_c26920at 2810.368 kb on - strandat 2810.463 kb on - strandat 2810.510 kb on - strandat 2810.611 kb on + strand, within PGA1_c26930at 2810.624 kb on - strand, within PGA1_c26930at 2810.652 kb on + strand, within PGA1_c26930at 2810.802 kb on - strand, within PGA1_c26930at 2810.812 kb on - strand, within PGA1_c26930at 2810.873 kb on + strand, within PGA1_c26930at 2810.878 kb on + strand, within PGA1_c26930at 2810.886 kb on - strand, within PGA1_c26930at 2810.913 kb on + strand, within PGA1_c26930at 2810.913 kb on + strand, within PGA1_c26930at 2810.921 kb on - strand, within PGA1_c26930at 2810.941 kb on - strand, within PGA1_c26930at 2810.968 kb on + strand, within PGA1_c26930at 2810.999 kb on - strand, within PGA1_c26930at 2811.116 kb on + strand, within PGA1_c26930at 2811.124 kb on - strand, within PGA1_c26930at 2811.126 kb on + strand, within PGA1_c26930at 2811.126 kb on + strand, within PGA1_c26930at 2811.134 kb on - strand, within PGA1_c26930at 2811.160 kb on + strand, within PGA1_c26930at 2811.173 kb on - strand, within PGA1_c26930at 2811.216 kb on + strand, within PGA1_c26930at 2811.224 kb on - strand, within PGA1_c26930at 2811.224 kb on - strand, within PGA1_c26930at 2811.235 kb on - strand, within PGA1_c26930at 2811.249 kb on + strand, within PGA1_c26930at 2811.306 kb on - strandat 2811.315 kb on + strandat 2811.322 kb on + strandat 2811.322 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
2,808,410 - PGA1_c26910 0.38 -1.6
2,808,410 - PGA1_c26910 0.38 -0.1
2,808,411 - PGA1_c26910 0.38 -1.1
2,808,436 + PGA1_c26910 0.40 -1.7
2,808,444 - PGA1_c26910 0.40 -1.8
2,808,601 + PGA1_c26910 0.50 -0.9
2,808,601 + PGA1_c26910 0.50 +1.7
2,808,603 - PGA1_c26910 0.50 -0.9
2,808,609 - PGA1_c26910 0.51 -2.2
2,808,690 + PGA1_c26910 0.56 -0.9
2,808,740 + PGA1_c26910 0.59 -0.7
2,808,744 + PGA1_c26910 0.59 -0.7
2,808,757 - PGA1_c26910 0.60 +2.6
2,808,796 - PGA1_c26910 0.63 +2.5
2,808,829 - PGA1_c26910 0.65 -1.9
2,808,866 + PGA1_c26910 0.67 -0.3
2,808,960 - PGA1_c26910 0.73 +1.9
2,809,015 + PGA1_c26910 0.77 -2.4
2,809,226 - +0.5
2,809,254 + -0.1
2,809,273 - -0.5
2,809,274 + +2.7
2,809,282 - -1.1
2,809,282 - -0.7
2,809,284 + -2.1
2,809,305 - -0.9
2,809,562 + PGA1_c26920 0.18 +0.1
2,809,565 - PGA1_c26920 0.18 -1.8
2,809,652 - PGA1_c26920 0.27 -2.6
2,809,717 + PGA1_c26920 0.33 -0.3
2,809,761 + PGA1_c26920 0.37 -1.5
2,809,774 - PGA1_c26920 0.38 -1.1
2,809,797 + PGA1_c26920 0.40 +4.0
2,809,797 + PGA1_c26920 0.40 -1.6
2,809,983 + PGA1_c26920 0.58 -0.7
2,810,021 - PGA1_c26920 0.62 -0.8
2,810,023 + PGA1_c26920 0.62 -1.6
2,810,028 + PGA1_c26920 0.62 +2.1
2,810,031 - PGA1_c26920 0.63 -2.5
2,810,058 + PGA1_c26920 0.65 -0.8
2,810,191 - PGA1_c26920 0.78 +0.1
2,810,274 + PGA1_c26920 0.86 +1.0
2,810,306 + PGA1_c26920 0.89 -0.6
2,810,306 + PGA1_c26920 0.89 +0.7
2,810,314 - PGA1_c26920 0.90 +0.5
2,810,368 - -2.2
2,810,463 - -1.3
2,810,510 - -1.3
2,810,611 + PGA1_c26930 0.20 -0.8
2,810,624 - PGA1_c26930 0.21 +0.4
2,810,652 + PGA1_c26930 0.24 +0.0
2,810,802 - PGA1_c26930 0.40 +1.2
2,810,812 - PGA1_c26930 0.41 +3.1
2,810,873 + PGA1_c26930 0.48 +1.1
2,810,878 + PGA1_c26930 0.48 +1.7
2,810,886 - PGA1_c26930 0.49 -1.1
2,810,913 + PGA1_c26930 0.52 +1.2
2,810,913 + PGA1_c26930 0.52 +1.4
2,810,921 - PGA1_c26930 0.53 +0.9
2,810,941 - PGA1_c26930 0.55 +1.1
2,810,968 + PGA1_c26930 0.58 -1.5
2,810,999 - PGA1_c26930 0.61 +0.7
2,811,116 + PGA1_c26930 0.73 +0.1
2,811,124 - PGA1_c26930 0.74 +0.1
2,811,126 + PGA1_c26930 0.74 +1.2
2,811,126 + PGA1_c26930 0.74 -0.0
2,811,134 - PGA1_c26930 0.75 +2.3
2,811,160 + PGA1_c26930 0.78 +0.2
2,811,173 - PGA1_c26930 0.79 -1.3
2,811,216 + PGA1_c26930 0.84 +1.4
2,811,224 - PGA1_c26930 0.85 -0.5
2,811,224 - PGA1_c26930 0.85 +2.5
2,811,235 - PGA1_c26930 0.86 -0.5
2,811,249 + PGA1_c26930 0.87 +0.3
2,811,306 - +0.1
2,811,315 + +2.3
2,811,322 + -2.3
2,811,322 + -0.7

Or see this region's nucleotide sequence