Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26910 and PGA1_c26920 overlap by 11 nucleotides PGA1_c26920 and PGA1_c26930 are separated by 1 nucleotides PGA1_c26930 and PGA1_c26940 overlap by 4 nucleotides
PGA1_c26910: PGA1_c26910 - ABC transporter, ATP-binding protein, at 2,807,814 to 2,809,382
_c26910
PGA1_c26920: PGA1_c26920 - ABC transporter, permease protein, at 2,809,372 to 2,810,421
_c26920
PGA1_c26930: PGA1_c26930 - ABC transporter, permease protein, at 2,810,423 to 2,811,367
_c26930
PGA1_c26940: PGA1_c26940 - cytosine deaminase CodA, at 2,811,364 to 2,812,647
_c26940
Position (kb)
2809
2810
2811 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2808.410 kb on - strand, within PGA1_c26910 at 2808.410 kb on - strand, within PGA1_c26910 at 2808.411 kb on - strand, within PGA1_c26910 at 2808.436 kb on + strand, within PGA1_c26910 at 2808.444 kb on - strand, within PGA1_c26910 at 2808.601 kb on + strand, within PGA1_c26910 at 2808.601 kb on + strand, within PGA1_c26910 at 2808.603 kb on - strand, within PGA1_c26910 at 2808.609 kb on - strand, within PGA1_c26910 at 2808.690 kb on + strand, within PGA1_c26910 at 2808.740 kb on + strand, within PGA1_c26910 at 2808.744 kb on + strand, within PGA1_c26910 at 2808.757 kb on - strand, within PGA1_c26910 at 2808.796 kb on - strand, within PGA1_c26910 at 2808.829 kb on - strand, within PGA1_c26910 at 2808.866 kb on + strand, within PGA1_c26910 at 2808.960 kb on - strand, within PGA1_c26910 at 2809.015 kb on + strand, within PGA1_c26910 at 2809.226 kb on - strand at 2809.254 kb on + strand at 2809.273 kb on - strand at 2809.274 kb on + strand at 2809.282 kb on - strand at 2809.282 kb on - strand at 2809.284 kb on + strand at 2809.305 kb on - strand at 2809.562 kb on + strand, within PGA1_c26920 at 2809.565 kb on - strand, within PGA1_c26920 at 2809.652 kb on - strand, within PGA1_c26920 at 2809.717 kb on + strand, within PGA1_c26920 at 2809.761 kb on + strand, within PGA1_c26920 at 2809.774 kb on - strand, within PGA1_c26920 at 2809.797 kb on + strand, within PGA1_c26920 at 2809.797 kb on + strand, within PGA1_c26920 at 2809.983 kb on + strand, within PGA1_c26920 at 2810.021 kb on - strand, within PGA1_c26920 at 2810.023 kb on + strand, within PGA1_c26920 at 2810.028 kb on + strand, within PGA1_c26920 at 2810.031 kb on - strand, within PGA1_c26920 at 2810.058 kb on + strand, within PGA1_c26920 at 2810.191 kb on - strand, within PGA1_c26920 at 2810.274 kb on + strand, within PGA1_c26920 at 2810.306 kb on + strand, within PGA1_c26920 at 2810.306 kb on + strand, within PGA1_c26920 at 2810.314 kb on - strand, within PGA1_c26920 at 2810.368 kb on - strand at 2810.463 kb on - strand at 2810.510 kb on - strand at 2810.611 kb on + strand, within PGA1_c26930 at 2810.624 kb on - strand, within PGA1_c26930 at 2810.652 kb on + strand, within PGA1_c26930 at 2810.802 kb on - strand, within PGA1_c26930 at 2810.812 kb on - strand, within PGA1_c26930 at 2810.873 kb on + strand, within PGA1_c26930 at 2810.878 kb on + strand, within PGA1_c26930 at 2810.886 kb on - strand, within PGA1_c26930 at 2810.913 kb on + strand, within PGA1_c26930 at 2810.913 kb on + strand, within PGA1_c26930 at 2810.921 kb on - strand, within PGA1_c26930 at 2810.941 kb on - strand, within PGA1_c26930 at 2810.968 kb on + strand, within PGA1_c26930 at 2810.999 kb on - strand, within PGA1_c26930 at 2811.116 kb on + strand, within PGA1_c26930 at 2811.124 kb on - strand, within PGA1_c26930 at 2811.126 kb on + strand, within PGA1_c26930 at 2811.126 kb on + strand, within PGA1_c26930 at 2811.134 kb on - strand, within PGA1_c26930 at 2811.160 kb on + strand, within PGA1_c26930 at 2811.173 kb on - strand, within PGA1_c26930 at 2811.216 kb on + strand, within PGA1_c26930 at 2811.224 kb on - strand, within PGA1_c26930 at 2811.224 kb on - strand, within PGA1_c26930 at 2811.235 kb on - strand, within PGA1_c26930 at 2811.249 kb on + strand, within PGA1_c26930 at 2811.306 kb on - strand at 2811.315 kb on + strand at 2811.322 kb on + strand at 2811.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,808,410 - PGA1_c26910 0.38 -1.6 2,808,410 - PGA1_c26910 0.38 -0.1 2,808,411 - PGA1_c26910 0.38 -1.1 2,808,436 + PGA1_c26910 0.40 -1.7 2,808,444 - PGA1_c26910 0.40 -1.8 2,808,601 + PGA1_c26910 0.50 -0.9 2,808,601 + PGA1_c26910 0.50 +1.7 2,808,603 - PGA1_c26910 0.50 -0.9 2,808,609 - PGA1_c26910 0.51 -2.2 2,808,690 + PGA1_c26910 0.56 -0.9 2,808,740 + PGA1_c26910 0.59 -0.7 2,808,744 + PGA1_c26910 0.59 -0.7 2,808,757 - PGA1_c26910 0.60 +2.6 2,808,796 - PGA1_c26910 0.63 +2.5 2,808,829 - PGA1_c26910 0.65 -1.9 2,808,866 + PGA1_c26910 0.67 -0.3 2,808,960 - PGA1_c26910 0.73 +1.9 2,809,015 + PGA1_c26910 0.77 -2.4 2,809,226 - +0.5 2,809,254 + -0.1 2,809,273 - -0.5 2,809,274 + +2.7 2,809,282 - -1.1 2,809,282 - -0.7 2,809,284 + -2.1 2,809,305 - -0.9 2,809,562 + PGA1_c26920 0.18 +0.1 2,809,565 - PGA1_c26920 0.18 -1.8 2,809,652 - PGA1_c26920 0.27 -2.6 2,809,717 + PGA1_c26920 0.33 -0.3 2,809,761 + PGA1_c26920 0.37 -1.5 2,809,774 - PGA1_c26920 0.38 -1.1 2,809,797 + PGA1_c26920 0.40 +4.0 2,809,797 + PGA1_c26920 0.40 -1.6 2,809,983 + PGA1_c26920 0.58 -0.7 2,810,021 - PGA1_c26920 0.62 -0.8 2,810,023 + PGA1_c26920 0.62 -1.6 2,810,028 + PGA1_c26920 0.62 +2.1 2,810,031 - PGA1_c26920 0.63 -2.5 2,810,058 + PGA1_c26920 0.65 -0.8 2,810,191 - PGA1_c26920 0.78 +0.1 2,810,274 + PGA1_c26920 0.86 +1.0 2,810,306 + PGA1_c26920 0.89 -0.6 2,810,306 + PGA1_c26920 0.89 +0.7 2,810,314 - PGA1_c26920 0.90 +0.5 2,810,368 - -2.2 2,810,463 - -1.3 2,810,510 - -1.3 2,810,611 + PGA1_c26930 0.20 -0.8 2,810,624 - PGA1_c26930 0.21 +0.4 2,810,652 + PGA1_c26930 0.24 +0.0 2,810,802 - PGA1_c26930 0.40 +1.2 2,810,812 - PGA1_c26930 0.41 +3.1 2,810,873 + PGA1_c26930 0.48 +1.1 2,810,878 + PGA1_c26930 0.48 +1.7 2,810,886 - PGA1_c26930 0.49 -1.1 2,810,913 + PGA1_c26930 0.52 +1.2 2,810,913 + PGA1_c26930 0.52 +1.4 2,810,921 - PGA1_c26930 0.53 +0.9 2,810,941 - PGA1_c26930 0.55 +1.1 2,810,968 + PGA1_c26930 0.58 -1.5 2,810,999 - PGA1_c26930 0.61 +0.7 2,811,116 + PGA1_c26930 0.73 +0.1 2,811,124 - PGA1_c26930 0.74 +0.1 2,811,126 + PGA1_c26930 0.74 +1.2 2,811,126 + PGA1_c26930 0.74 -0.0 2,811,134 - PGA1_c26930 0.75 +2.3 2,811,160 + PGA1_c26930 0.78 +0.2 2,811,173 - PGA1_c26930 0.79 -1.3 2,811,216 + PGA1_c26930 0.84 +1.4 2,811,224 - PGA1_c26930 0.85 -0.5 2,811,224 - PGA1_c26930 0.85 +2.5 2,811,235 - PGA1_c26930 0.86 -0.5 2,811,249 + PGA1_c26930 0.87 +0.3 2,811,306 - +0.1 2,811,315 + +2.3 2,811,322 + -2.3 2,811,322 + -0.7
Or see this region's nucleotide sequence