Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02760 and PGA1_c02770 are separated by 119 nucleotides PGA1_c02770 and PGA1_c02780 overlap by 4 nucleotides
PGA1_c02760: PGA1_c02760 - putative methylated-DNA--protein-cysteine methyltransferase, at 264,448 to 265,518
_c02760
PGA1_c02770: PGA1_c02770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI, at 265,638 to 267,158
_c02770
PGA1_c02780: PGA1_c02780 - Membrane-bound metallopeptidase, at 267,155 to 268,339
_c02780
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 264.647 kb on + strand, within PGA1_c02760 at 264.655 kb on - strand, within PGA1_c02760 at 264.656 kb on - strand, within PGA1_c02760 at 264.741 kb on - strand, within PGA1_c02760 at 264.748 kb on - strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.770 kb on + strand, within PGA1_c02760 at 264.795 kb on - strand, within PGA1_c02760 at 264.805 kb on - strand, within PGA1_c02760 at 264.833 kb on + strand, within PGA1_c02760 at 264.859 kb on + strand, within PGA1_c02760 at 264.877 kb on + strand, within PGA1_c02760 at 264.921 kb on - strand, within PGA1_c02760 at 264.943 kb on + strand, within PGA1_c02760 at 264.951 kb on - strand, within PGA1_c02760 at 265.057 kb on + strand, within PGA1_c02760 at 265.065 kb on - strand, within PGA1_c02760 at 265.068 kb on + strand, within PGA1_c02760 at 265.090 kb on + strand, within PGA1_c02760 at 265.098 kb on - strand, within PGA1_c02760 at 265.156 kb on - strand, within PGA1_c02760 at 265.170 kb on + strand, within PGA1_c02760 at 265.178 kb on - strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.215 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.225 kb on + strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.233 kb on - strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.260 kb on + strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.268 kb on - strand, within PGA1_c02760 at 265.307 kb on + strand, within PGA1_c02760 at 265.325 kb on + strand, within PGA1_c02760 at 265.393 kb on - strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.400 kb on + strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.408 kb on - strand, within PGA1_c02760 at 265.423 kb on - strand at 265.520 kb on - strand at 265.520 kb on - strand at 265.547 kb on + strand at 265.557 kb on + strand at 265.557 kb on + strand at 265.565 kb on - strand at 267.157 kb on - strand at 267.160 kb on - strand at 267.200 kb on + strand at 267.208 kb on + strand at 267.216 kb on - strand at 267.221 kb on + strand at 267.257 kb on - strand at 267.258 kb on + strand at 267.331 kb on + strand, within PGA1_c02780 at 267.331 kb on + strand, within PGA1_c02780 at 267.331 kb on + strand, within PGA1_c02780 at 267.339 kb on - strand, within PGA1_c02780 at 267.354 kb on - strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.413 kb on + strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.421 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.564 kb on - strand, within PGA1_c02780 at 267.646 kb on + strand, within PGA1_c02780 at 267.689 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.706 kb on - strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.708 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.723 kb on + strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.731 kb on - strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.795 kb on + strand, within PGA1_c02780 at 267.855 kb on - strand, within PGA1_c02780 at 267.929 kb on + strand, within PGA1_c02780 at 267.930 kb on + strand, within PGA1_c02780 at 267.934 kb on + strand, within PGA1_c02780 at 267.938 kb on - strand, within PGA1_c02780 at 268.019 kb on - strand, within PGA1_c02780 at 268.127 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.135 kb on + strand, within PGA1_c02780 at 268.156 kb on - strand, within PGA1_c02780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 264,647 + PGA1_c02760 0.19 +1.8 264,655 - PGA1_c02760 0.19 +0.3 264,656 - PGA1_c02760 0.19 +1.6 264,741 - PGA1_c02760 0.27 -0.4 264,748 - PGA1_c02760 0.28 +3.0 264,770 + PGA1_c02760 0.30 +1.0 264,770 + PGA1_c02760 0.30 -1.7 264,795 - PGA1_c02760 0.32 +1.8 264,805 - PGA1_c02760 0.33 -0.6 264,833 + PGA1_c02760 0.36 +1.4 264,859 + PGA1_c02760 0.38 -1.9 264,877 + PGA1_c02760 0.40 -1.4 264,921 - PGA1_c02760 0.44 +2.5 264,943 + PGA1_c02760 0.46 -0.9 264,951 - PGA1_c02760 0.47 +1.0 265,057 + PGA1_c02760 0.57 +0.8 265,065 - PGA1_c02760 0.58 -0.8 265,068 + PGA1_c02760 0.58 -0.4 265,090 + PGA1_c02760 0.60 +1.0 265,098 - PGA1_c02760 0.61 -2.4 265,156 - PGA1_c02760 0.66 +0.8 265,170 + PGA1_c02760 0.67 -3.4 265,178 - PGA1_c02760 0.68 -2.1 265,215 + PGA1_c02760 0.72 -2.2 265,215 + PGA1_c02760 0.72 -0.7 265,225 + PGA1_c02760 0.73 -0.3 265,225 + PGA1_c02760 0.73 +0.6 265,233 - PGA1_c02760 0.73 -1.7 265,233 - PGA1_c02760 0.73 +0.1 265,233 - PGA1_c02760 0.73 +3.0 265,260 + PGA1_c02760 0.76 -1.6 265,260 + PGA1_c02760 0.76 +0.2 265,260 + PGA1_c02760 0.76 -1.3 265,260 + PGA1_c02760 0.76 -1.5 265,260 + PGA1_c02760 0.76 +0.6 265,260 + PGA1_c02760 0.76 +1.7 265,260 + PGA1_c02760 0.76 +2.2 265,260 + PGA1_c02760 0.76 +0.4 265,260 + PGA1_c02760 0.76 +2.2 265,260 + PGA1_c02760 0.76 -2.7 265,260 + PGA1_c02760 0.76 -2.1 265,260 + PGA1_c02760 0.76 +2.0 265,260 + PGA1_c02760 0.76 -0.3 265,260 + PGA1_c02760 0.76 +2.0 265,260 + PGA1_c02760 0.76 +0.6 265,268 - PGA1_c02760 0.77 +0.6 265,268 - PGA1_c02760 0.77 -1.1 265,268 - PGA1_c02760 0.77 -3.1 265,268 - PGA1_c02760 0.77 -3.1 265,268 - PGA1_c02760 0.77 -1.4 265,268 - PGA1_c02760 0.77 -2.8 265,268 - PGA1_c02760 0.77 +1.5 265,307 + PGA1_c02760 0.80 -2.2 265,325 + PGA1_c02760 0.82 +0.5 265,393 - PGA1_c02760 0.88 +1.3 265,400 + PGA1_c02760 0.89 +0.8 265,400 + PGA1_c02760 0.89 +1.6 265,400 + PGA1_c02760 0.89 -2.1 265,408 - PGA1_c02760 0.90 -2.7 265,408 - PGA1_c02760 0.90 -0.8 265,408 - PGA1_c02760 0.90 +1.2 265,408 - PGA1_c02760 0.90 +1.6 265,408 - PGA1_c02760 0.90 +0.7 265,423 - +0.7 265,520 - -0.2 265,520 - +1.7 265,547 + -1.5 265,557 + +0.7 265,557 + -2.7 265,565 - -3.1 267,157 - -1.5 267,160 - +0.6 267,200 + -1.1 267,208 + -1.2 267,216 - -3.1 267,221 + -2.0 267,257 - -2.8 267,258 + -2.3 267,331 + PGA1_c02780 0.15 -1.3 267,331 + PGA1_c02780 0.15 -1.0 267,331 + PGA1_c02780 0.15 -1.6 267,339 - PGA1_c02780 0.16 +2.2 267,354 - PGA1_c02780 0.17 +1.1 267,413 + PGA1_c02780 0.22 -1.5 267,413 + PGA1_c02780 0.22 -1.6 267,421 - PGA1_c02780 0.22 -1.7 267,421 - PGA1_c02780 0.22 +0.5 267,421 - PGA1_c02780 0.22 -2.9 267,564 - PGA1_c02780 0.35 -0.2 267,564 - PGA1_c02780 0.35 -2.4 267,646 + PGA1_c02780 0.41 -1.9 267,689 - PGA1_c02780 0.45 -0.2 267,706 - PGA1_c02780 0.46 -2.3 267,706 - PGA1_c02780 0.46 +1.2 267,706 - PGA1_c02780 0.46 +0.5 267,708 + PGA1_c02780 0.47 -1.1 267,708 + PGA1_c02780 0.47 -1.3 267,723 + PGA1_c02780 0.48 +0.7 267,723 + PGA1_c02780 0.48 +1.6 267,723 + PGA1_c02780 0.48 +0.2 267,723 + PGA1_c02780 0.48 -1.9 267,723 + PGA1_c02780 0.48 -0.3 267,731 - PGA1_c02780 0.49 -1.1 267,731 - PGA1_c02780 0.49 -1.8 267,795 + PGA1_c02780 0.54 +0.5 267,795 + PGA1_c02780 0.54 +0.5 267,855 - PGA1_c02780 0.59 -1.4 267,929 + PGA1_c02780 0.65 -1.1 267,930 + PGA1_c02780 0.65 +0.3 267,934 + PGA1_c02780 0.66 -1.6 267,938 - PGA1_c02780 0.66 -1.1 268,019 - PGA1_c02780 0.73 -0.8 268,127 + PGA1_c02780 0.82 -2.0 268,135 + PGA1_c02780 0.83 -0.1 268,135 + PGA1_c02780 0.83 +0.3 268,156 - PGA1_c02780 0.84 -1.1
Or see this region's nucleotide sequence