Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02720 and PGA1_c02730 are separated by 10 nucleotides PGA1_c02730 and PGA1_c02740 are separated by 12 nucleotides PGA1_c02740 and PGA1_c02750 overlap by 4 nucleotides
PGA1_c02720: PGA1_c02720 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 260,515 to 261,396
_c02720
PGA1_c02730: PGA1_c02730 - sn-glycerol-3-phosphate transport system permease protein UgpE, at 261,407 to 262,288
_c02730
PGA1_c02740: PGA1_c02740 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 262,301 to 263,347
_c02740
PGA1_c02750: PGA1_c02750 - Metal-dependent hydrolase, at 263,344 to 264,345
_c02750
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 261.325 kb on - strand at 261.385 kb on + strand at 261.393 kb on - strand at 261.407 kb on - strand at 261.411 kb on - strand at 261.504 kb on - strand, within PGA1_c02730 at 261.514 kb on + strand, within PGA1_c02730 at 261.531 kb on - strand, within PGA1_c02730 at 261.548 kb on - strand, within PGA1_c02730 at 261.572 kb on + strand, within PGA1_c02730 at 261.575 kb on - strand, within PGA1_c02730 at 261.582 kb on - strand, within PGA1_c02730 at 261.582 kb on - strand, within PGA1_c02730 at 261.596 kb on + strand, within PGA1_c02730 at 261.627 kb on + strand, within PGA1_c02730 at 261.634 kb on + strand, within PGA1_c02730 at 261.657 kb on + strand, within PGA1_c02730 at 261.657 kb on + strand, within PGA1_c02730 at 261.657 kb on + strand, within PGA1_c02730 at 261.657 kb on + strand, within PGA1_c02730 at 261.657 kb on + strand, within PGA1_c02730 at 261.665 kb on - strand, within PGA1_c02730 at 261.665 kb on - strand, within PGA1_c02730 at 261.667 kb on + strand, within PGA1_c02730 at 261.670 kb on - strand, within PGA1_c02730 at 261.693 kb on + strand, within PGA1_c02730 at 261.701 kb on - strand, within PGA1_c02730 at 261.739 kb on - strand, within PGA1_c02730 at 261.807 kb on + strand, within PGA1_c02730 at 261.829 kb on + strand, within PGA1_c02730 at 261.839 kb on - strand, within PGA1_c02730 at 261.867 kb on + strand, within PGA1_c02730 at 261.955 kb on + strand, within PGA1_c02730 at 261.963 kb on - strand, within PGA1_c02730 at 261.963 kb on - strand, within PGA1_c02730 at 262.021 kb on + strand, within PGA1_c02730 at 262.029 kb on - strand, within PGA1_c02730 at 262.029 kb on - strand, within PGA1_c02730 at 262.029 kb on - strand, within PGA1_c02730 at 262.096 kb on + strand, within PGA1_c02730 at 262.130 kb on - strand, within PGA1_c02730 at 262.134 kb on + strand, within PGA1_c02730 at 262.155 kb on + strand, within PGA1_c02730 at 262.155 kb on + strand, within PGA1_c02730 at 262.156 kb on - strand, within PGA1_c02730 at 262.163 kb on - strand, within PGA1_c02730 at 262.163 kb on - strand, within PGA1_c02730 at 262.163 kb on - strand, within PGA1_c02730 at 262.216 kb on + strand at 262.222 kb on + strand at 262.332 kb on + strand at 262.341 kb on - strand at 262.347 kb on + strand at 262.348 kb on + strand at 262.377 kb on + strand at 262.377 kb on + strand at 262.385 kb on - strand at 262.455 kb on + strand, within PGA1_c02740 at 262.455 kb on + strand, within PGA1_c02740 at 262.463 kb on - strand, within PGA1_c02740 at 262.501 kb on + strand, within PGA1_c02740 at 262.617 kb on - strand, within PGA1_c02740 at 262.643 kb on - strand, within PGA1_c02740 at 262.721 kb on - strand, within PGA1_c02740 at 262.740 kb on + strand, within PGA1_c02740 at 262.799 kb on + strand, within PGA1_c02740 at 262.828 kb on + strand, within PGA1_c02740 at 262.833 kb on + strand, within PGA1_c02740 at 262.838 kb on + strand, within PGA1_c02740 at 262.848 kb on + strand, within PGA1_c02740 at 262.849 kb on + strand, within PGA1_c02740 at 262.883 kb on - strand, within PGA1_c02740 at 262.945 kb on + strand, within PGA1_c02740 at 262.945 kb on + strand, within PGA1_c02740 at 262.953 kb on - strand, within PGA1_c02740 at 263.007 kb on - strand, within PGA1_c02740 at 263.109 kb on + strand, within PGA1_c02740 at 263.172 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.228 kb on + strand, within PGA1_c02740 at 263.241 kb on + strand, within PGA1_c02740 at 263.241 kb on + strand, within PGA1_c02740 at 263.273 kb on + strand at 263.361 kb on - strand at 263.371 kb on - strand at 263.384 kb on + strand at 263.397 kb on + strand at 263.402 kb on + strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.405 kb on - strand at 263.407 kb on + strand at 263.523 kb on + strand, within PGA1_c02750 at 263.547 kb on + strand, within PGA1_c02750 at 263.556 kb on + strand, within PGA1_c02750 at 263.604 kb on + strand, within PGA1_c02750 at 263.635 kb on + strand, within PGA1_c02750 at 263.635 kb on + strand, within PGA1_c02750 at 263.643 kb on - strand, within PGA1_c02750 at 263.643 kb on - strand, within PGA1_c02750 at 263.648 kb on + strand, within PGA1_c02750 at 263.649 kb on - strand, within PGA1_c02750 at 263.668 kb on + strand, within PGA1_c02750 at 263.726 kb on - strand, within PGA1_c02750 at 263.731 kb on - strand, within PGA1_c02750 at 263.810 kb on + strand, within PGA1_c02750 at 263.810 kb on + strand, within PGA1_c02750 at 263.818 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.823 kb on - strand, within PGA1_c02750 at 263.950 kb on + strand, within PGA1_c02750 at 263.950 kb on + strand, within PGA1_c02750 at 263.958 kb on - strand, within PGA1_c02750 at 263.983 kb on + strand, within PGA1_c02750 at 263.991 kb on - strand, within PGA1_c02750 at 263.991 kb on - strand, within PGA1_c02750 at 264.039 kb on + strand, within PGA1_c02750 at 264.040 kb on + strand, within PGA1_c02750 at 264.044 kb on + strand, within PGA1_c02750 at 264.062 kb on - strand, within PGA1_c02750 at 264.062 kb on - strand, within PGA1_c02750 at 264.064 kb on + strand, within PGA1_c02750 at 264.120 kb on + strand, within PGA1_c02750 at 264.141 kb on + strand, within PGA1_c02750 at 264.142 kb on + strand, within PGA1_c02750 at 264.142 kb on + strand, within PGA1_c02750 at 264.143 kb on + strand, within PGA1_c02750 at 264.150 kb on - strand, within PGA1_c02750 at 264.150 kb on - strand, within PGA1_c02750 at 264.183 kb on + strand, within PGA1_c02750 at 264.190 kb on - strand, within PGA1_c02750 at 264.247 kb on - strand at 264.256 kb on + strand at 264.256 kb on + strand at 264.256 kb on + strand at 264.259 kb on - strand at 264.264 kb on - strand at 264.264 kb on - strand at 264.264 kb on - strand at 264.265 kb on + strand at 264.273 kb on + strand at 264.273 kb on - strand at 264.293 kb on + strand at 264.319 kb on + strand at 264.319 kb on + strand at 264.319 kb on + strand at 264.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 261,325 - +0.9 261,385 + +1.0 261,393 - -2.6 261,407 - +0.7 261,411 - -2.0 261,504 - PGA1_c02730 0.11 +0.6 261,514 + PGA1_c02730 0.12 -1.7 261,531 - PGA1_c02730 0.14 -2.3 261,548 - PGA1_c02730 0.16 +2.2 261,572 + PGA1_c02730 0.19 -2.2 261,575 - PGA1_c02730 0.19 +1.2 261,582 - PGA1_c02730 0.20 -1.0 261,582 - PGA1_c02730 0.20 -1.1 261,596 + PGA1_c02730 0.21 -1.0 261,627 + PGA1_c02730 0.25 -2.0 261,634 + PGA1_c02730 0.26 -2.9 261,657 + PGA1_c02730 0.28 +0.0 261,657 + PGA1_c02730 0.28 +0.5 261,657 + PGA1_c02730 0.28 +0.6 261,657 + PGA1_c02730 0.28 -1.1 261,657 + PGA1_c02730 0.28 -1.6 261,665 - PGA1_c02730 0.29 -2.8 261,665 - PGA1_c02730 0.29 +1.0 261,667 + PGA1_c02730 0.29 +0.1 261,670 - PGA1_c02730 0.30 +1.0 261,693 + PGA1_c02730 0.32 -1.1 261,701 - PGA1_c02730 0.33 -1.5 261,739 - PGA1_c02730 0.38 -0.1 261,807 + PGA1_c02730 0.45 -0.8 261,829 + PGA1_c02730 0.48 -1.1 261,839 - PGA1_c02730 0.49 -1.6 261,867 + PGA1_c02730 0.52 -0.4 261,955 + PGA1_c02730 0.62 -1.8 261,963 - PGA1_c02730 0.63 -2.9 261,963 - PGA1_c02730 0.63 +1.1 262,021 + PGA1_c02730 0.70 +0.8 262,029 - PGA1_c02730 0.71 +2.2 262,029 - PGA1_c02730 0.71 +0.7 262,029 - PGA1_c02730 0.71 +1.3 262,096 + PGA1_c02730 0.78 -1.7 262,130 - PGA1_c02730 0.82 -1.9 262,134 + PGA1_c02730 0.82 -1.5 262,155 + PGA1_c02730 0.85 +0.2 262,155 + PGA1_c02730 0.85 -1.8 262,156 - PGA1_c02730 0.85 -3.3 262,163 - PGA1_c02730 0.86 +2.4 262,163 - PGA1_c02730 0.86 -2.0 262,163 - PGA1_c02730 0.86 +0.4 262,216 + -0.3 262,222 + -1.5 262,332 + -1.5 262,341 - +0.3 262,347 + -1.2 262,348 + -1.0 262,377 + -0.4 262,377 + +0.7 262,385 - +0.4 262,455 + PGA1_c02740 0.15 -0.6 262,455 + PGA1_c02740 0.15 -3.0 262,463 - PGA1_c02740 0.15 -0.2 262,501 + PGA1_c02740 0.19 -1.8 262,617 - PGA1_c02740 0.30 -2.9 262,643 - PGA1_c02740 0.33 -2.1 262,721 - PGA1_c02740 0.40 -3.2 262,740 + PGA1_c02740 0.42 +0.8 262,799 + PGA1_c02740 0.48 +2.3 262,828 + PGA1_c02740 0.50 +1.4 262,833 + PGA1_c02740 0.51 +0.7 262,838 + PGA1_c02740 0.51 -1.9 262,848 + PGA1_c02740 0.52 +0.4 262,849 + PGA1_c02740 0.52 +0.2 262,883 - PGA1_c02740 0.56 +2.0 262,945 + PGA1_c02740 0.62 -0.8 262,945 + PGA1_c02740 0.62 -1.7 262,953 - PGA1_c02740 0.62 -1.1 263,007 - PGA1_c02740 0.67 -2.7 263,109 + PGA1_c02740 0.77 +0.2 263,172 + PGA1_c02740 0.83 -3.1 263,228 + PGA1_c02740 0.89 -1.4 263,228 + PGA1_c02740 0.89 -0.6 263,228 + PGA1_c02740 0.89 -1.7 263,241 + PGA1_c02740 0.90 -0.9 263,241 + PGA1_c02740 0.90 -0.3 263,273 + +0.8 263,361 - -2.7 263,371 - +1.5 263,384 + +0.4 263,397 + -1.0 263,402 + -1.4 263,405 - -1.9 263,405 - +0.7 263,405 - -1.6 263,405 - +1.8 263,405 - +0.5 263,405 - +2.8 263,407 + +0.5 263,523 + PGA1_c02750 0.18 -0.2 263,547 + PGA1_c02750 0.20 -2.8 263,556 + PGA1_c02750 0.21 +1.0 263,604 + PGA1_c02750 0.26 +0.7 263,635 + PGA1_c02750 0.29 -2.1 263,635 + PGA1_c02750 0.29 +1.6 263,643 - PGA1_c02750 0.30 -0.7 263,643 - PGA1_c02750 0.30 -1.6 263,648 + PGA1_c02750 0.30 -2.1 263,649 - PGA1_c02750 0.30 +0.3 263,668 + PGA1_c02750 0.32 +0.1 263,726 - PGA1_c02750 0.38 -0.6 263,731 - PGA1_c02750 0.39 -0.0 263,810 + PGA1_c02750 0.47 +0.4 263,810 + PGA1_c02750 0.47 -0.6 263,818 - PGA1_c02750 0.47 -1.7 263,823 - PGA1_c02750 0.48 +3.0 263,823 - PGA1_c02750 0.48 -0.4 263,823 - PGA1_c02750 0.48 +0.8 263,823 - PGA1_c02750 0.48 +1.3 263,950 + PGA1_c02750 0.60 +0.1 263,950 + PGA1_c02750 0.60 -1.1 263,958 - PGA1_c02750 0.61 +0.7 263,983 + PGA1_c02750 0.64 -0.6 263,991 - PGA1_c02750 0.65 +0.6 263,991 - PGA1_c02750 0.65 +1.3 264,039 + PGA1_c02750 0.69 +0.4 264,040 + PGA1_c02750 0.69 -0.6 264,044 + PGA1_c02750 0.70 +1.6 264,062 - PGA1_c02750 0.72 +0.7 264,062 - PGA1_c02750 0.72 -1.4 264,064 + PGA1_c02750 0.72 -1.7 264,120 + PGA1_c02750 0.77 +0.9 264,141 + PGA1_c02750 0.80 +0.4 264,142 + PGA1_c02750 0.80 -0.2 264,142 + PGA1_c02750 0.80 +1.9 264,143 + PGA1_c02750 0.80 +1.2 264,150 - PGA1_c02750 0.80 +2.8 264,150 - PGA1_c02750 0.80 +1.8 264,183 + PGA1_c02750 0.84 -0.7 264,190 - PGA1_c02750 0.84 +0.2 264,247 - -2.5 264,256 + -2.4 264,256 + +1.7 264,256 + +0.4 264,259 - -1.0 264,264 - -2.3 264,264 - -0.8 264,264 - +0.8 264,265 + -1.8 264,273 + -1.6 264,273 - -0.6 264,293 + +2.4 264,319 + -0.4 264,319 + -0.7 264,319 + +0.9 264,327 - +0.6
Or see this region's nucleotide sequence