Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25070

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c25050 and PGA1_c25060 are separated by 142 nucleotidesPGA1_c25060 and PGA1_c25070 are separated by 6 nucleotidesPGA1_c25070 and PGA1_c25080 are separated by 134 nucleotidesPGA1_c25080 and PGA1_c25090 are separated by 11 nucleotides PGA1_c25050: PGA1_c25050 - ribose-phosphate pyrophosphokinase Prs, at 2,608,888 to 2,609,907 _c25050 PGA1_c25060: PGA1_c25060 - putative glutathione-dependent formaldehyde-activating enzyme, GFA, at 2,610,050 to 2,610,427 _c25060 PGA1_c25070: PGA1_c25070 - H-type lectin domain., at 2,610,434 to 2,610,784 _c25070 PGA1_c25080: PGA1_c25080 - ATP synthase epsilon chain, at 2,610,919 to 2,611,332 _c25080 PGA1_c25090: PGA1_c25090 - ATP synthase subunit beta, at 2,611,344 to 2,612,768 _c25090 Position (kb) 2610 2611Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2609.943 kb on - strandat 2609.979 kb on + strandat 2609.979 kb on + strandat 2609.979 kb on + strandat 2609.982 kb on - strandat 2609.982 kb on - strandat 2610.017 kb on + strandat 2610.038 kb on + strandat 2610.048 kb on + strandat 2610.064 kb on + strandat 2610.066 kb on - strandat 2610.066 kb on - strandat 2610.066 kb on - strandat 2610.084 kb on - strandat 2610.107 kb on - strand, within PGA1_c25060at 2610.125 kb on - strand, within PGA1_c25060at 2610.139 kb on + strand, within PGA1_c25060at 2610.144 kb on + strand, within PGA1_c25060at 2610.152 kb on - strand, within PGA1_c25060at 2610.205 kb on + strand, within PGA1_c25060at 2610.298 kb on + strand, within PGA1_c25060at 2610.304 kb on + strand, within PGA1_c25060at 2610.307 kb on - strand, within PGA1_c25060at 2610.307 kb on - strand, within PGA1_c25060at 2610.312 kb on - strand, within PGA1_c25060at 2610.328 kb on + strand, within PGA1_c25060at 2610.459 kb on - strandat 2610.489 kb on - strand, within PGA1_c25070at 2610.571 kb on + strand, within PGA1_c25070at 2610.579 kb on - strand, within PGA1_c25070at 2610.622 kb on + strand, within PGA1_c25070at 2610.623 kb on - strand, within PGA1_c25070at 2610.733 kb on + strand, within PGA1_c25070at 2610.754 kb on + strandat 2610.760 kb on + strandat 2610.760 kb on + strandat 2610.760 kb on + strandat 2610.762 kb on - strandat 2610.762 kb on - strandat 2610.762 kb on - strandat 2610.762 kb on - strandat 2610.762 kb on - strandat 2610.768 kb on - strandat 2610.768 kb on - strandat 2610.768 kb on - strandat 2610.770 kb on + strandat 2610.770 kb on + strandat 2610.846 kb on + strandat 2610.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,609,943 - -2.7
2,609,979 + +1.2
2,609,979 + +1.5
2,609,979 + -1.1
2,609,982 - +1.6
2,609,982 - -0.5
2,610,017 + +1.3
2,610,038 + +0.3
2,610,048 + -1.5
2,610,064 + +2.3
2,610,066 - +0.9
2,610,066 - +0.1
2,610,066 - -0.5
2,610,084 - -0.2
2,610,107 - PGA1_c25060 0.15 -0.3
2,610,125 - PGA1_c25060 0.20 +0.8
2,610,139 + PGA1_c25060 0.24 +1.6
2,610,144 + PGA1_c25060 0.25 -3.6
2,610,152 - PGA1_c25060 0.27 +0.3
2,610,205 + PGA1_c25060 0.41 -0.6
2,610,298 + PGA1_c25060 0.66 -1.7
2,610,304 + PGA1_c25060 0.67 +1.2
2,610,307 - PGA1_c25060 0.68 +2.0
2,610,307 - PGA1_c25060 0.68 -2.8
2,610,312 - PGA1_c25060 0.69 +3.3
2,610,328 + PGA1_c25060 0.74 +2.2
2,610,459 - +0.5
2,610,489 - PGA1_c25070 0.16 -1.7
2,610,571 + PGA1_c25070 0.39 -2.7
2,610,579 - PGA1_c25070 0.41 -1.8
2,610,622 + PGA1_c25070 0.54 +0.4
2,610,623 - PGA1_c25070 0.54 +0.8
2,610,733 + PGA1_c25070 0.85 -2.1
2,610,754 + -1.1
2,610,760 + -2.2
2,610,760 + +1.7
2,610,760 + +1.3
2,610,762 - -2.2
2,610,762 - +0.8
2,610,762 - +1.3
2,610,762 - -0.7
2,610,762 - +0.1
2,610,768 - +1.7
2,610,768 - +2.1
2,610,768 - -2.3
2,610,770 + -2.2
2,610,770 + +0.4
2,610,846 + -0.6
2,610,854 - -0.7

Or see this region's nucleotide sequence