Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25050 and PGA1_c25060 are separated by 142 nucleotides PGA1_c25060 and PGA1_c25070 are separated by 6 nucleotides PGA1_c25070 and PGA1_c25080 are separated by 134 nucleotides PGA1_c25080 and PGA1_c25090 are separated by 11 nucleotides
PGA1_c25050: PGA1_c25050 - ribose-phosphate pyrophosphokinase Prs, at 2,608,888 to 2,609,907
_c25050
PGA1_c25060: PGA1_c25060 - putative glutathione-dependent formaldehyde-activating enzyme, GFA, at 2,610,050 to 2,610,427
_c25060
PGA1_c25070: PGA1_c25070 - H-type lectin domain., at 2,610,434 to 2,610,784
_c25070
PGA1_c25080: PGA1_c25080 - ATP synthase epsilon chain, at 2,610,919 to 2,611,332
_c25080
PGA1_c25090: PGA1_c25090 - ATP synthase subunit beta, at 2,611,344 to 2,612,768
_c25090
Position (kb)
2610
2611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2609.943 kb on - strand at 2609.979 kb on + strand at 2609.979 kb on + strand at 2609.979 kb on + strand at 2609.982 kb on - strand at 2609.982 kb on - strand at 2610.017 kb on + strand at 2610.038 kb on + strand at 2610.048 kb on + strand at 2610.064 kb on + strand at 2610.066 kb on - strand at 2610.066 kb on - strand at 2610.066 kb on - strand at 2610.084 kb on - strand at 2610.107 kb on - strand, within PGA1_c25060 at 2610.125 kb on - strand, within PGA1_c25060 at 2610.139 kb on + strand, within PGA1_c25060 at 2610.144 kb on + strand, within PGA1_c25060 at 2610.152 kb on - strand, within PGA1_c25060 at 2610.205 kb on + strand, within PGA1_c25060 at 2610.298 kb on + strand, within PGA1_c25060 at 2610.304 kb on + strand, within PGA1_c25060 at 2610.307 kb on - strand, within PGA1_c25060 at 2610.307 kb on - strand, within PGA1_c25060 at 2610.312 kb on - strand, within PGA1_c25060 at 2610.328 kb on + strand, within PGA1_c25060 at 2610.459 kb on - strand at 2610.489 kb on - strand, within PGA1_c25070 at 2610.571 kb on + strand, within PGA1_c25070 at 2610.579 kb on - strand, within PGA1_c25070 at 2610.622 kb on + strand, within PGA1_c25070 at 2610.623 kb on - strand, within PGA1_c25070 at 2610.733 kb on + strand, within PGA1_c25070 at 2610.754 kb on + strand at 2610.760 kb on + strand at 2610.760 kb on + strand at 2610.760 kb on + strand at 2610.762 kb on - strand at 2610.762 kb on - strand at 2610.762 kb on - strand at 2610.762 kb on - strand at 2610.762 kb on - strand at 2610.768 kb on - strand at 2610.768 kb on - strand at 2610.768 kb on - strand at 2610.770 kb on + strand at 2610.770 kb on + strand at 2610.846 kb on + strand at 2610.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,609,943 - -2.7 2,609,979 + +1.2 2,609,979 + +1.5 2,609,979 + -1.1 2,609,982 - +1.6 2,609,982 - -0.5 2,610,017 + +1.3 2,610,038 + +0.3 2,610,048 + -1.5 2,610,064 + +2.3 2,610,066 - +0.9 2,610,066 - +0.1 2,610,066 - -0.5 2,610,084 - -0.2 2,610,107 - PGA1_c25060 0.15 -0.3 2,610,125 - PGA1_c25060 0.20 +0.8 2,610,139 + PGA1_c25060 0.24 +1.6 2,610,144 + PGA1_c25060 0.25 -3.6 2,610,152 - PGA1_c25060 0.27 +0.3 2,610,205 + PGA1_c25060 0.41 -0.6 2,610,298 + PGA1_c25060 0.66 -1.7 2,610,304 + PGA1_c25060 0.67 +1.2 2,610,307 - PGA1_c25060 0.68 +2.0 2,610,307 - PGA1_c25060 0.68 -2.8 2,610,312 - PGA1_c25060 0.69 +3.3 2,610,328 + PGA1_c25060 0.74 +2.2 2,610,459 - +0.5 2,610,489 - PGA1_c25070 0.16 -1.7 2,610,571 + PGA1_c25070 0.39 -2.7 2,610,579 - PGA1_c25070 0.41 -1.8 2,610,622 + PGA1_c25070 0.54 +0.4 2,610,623 - PGA1_c25070 0.54 +0.8 2,610,733 + PGA1_c25070 0.85 -2.1 2,610,754 + -1.1 2,610,760 + -2.2 2,610,760 + +1.7 2,610,760 + +1.3 2,610,762 - -2.2 2,610,762 - +0.8 2,610,762 - +1.3 2,610,762 - -0.7 2,610,762 - +0.1 2,610,768 - +1.7 2,610,768 - +2.1 2,610,768 - -2.3 2,610,770 + -2.2 2,610,770 + +0.4 2,610,846 + -0.6 2,610,854 - -0.7
Or see this region's nucleotide sequence