Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24990 and PGA1_c25000 overlap by 4 nucleotides PGA1_c25000 and PGA1_c25010 are separated by 0 nucleotides
PGA1_c24990: PGA1_c24990 - riboflavin biosynthesis protein RibF, at 2,603,840 to 2,604,772
_c24990
PGA1_c25000: PGA1_c25000 - Uncharacterized conserved protein, at 2,604,769 to 2,605,239
_c25000
PGA1_c25010: PGA1_c25010 - low specificity L-threonine aldolase LtaE, at 2,605,240 to 2,606,274
_c25010
Position (kb)
2604
2605
2606 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2603.783 kb on + strand at 2603.826 kb on + strand at 2603.829 kb on + strand at 2604.738 kb on + strand at 2604.746 kb on - strand at 2604.787 kb on - strand at 2604.834 kb on + strand, within PGA1_c25000 at 2604.842 kb on + strand, within PGA1_c25000 at 2604.909 kb on - strand, within PGA1_c25000 at 2604.930 kb on - strand, within PGA1_c25000 at 2605.052 kb on - strand, within PGA1_c25000 at 2605.057 kb on + strand, within PGA1_c25000 at 2605.062 kb on + strand, within PGA1_c25000 at 2605.065 kb on - strand, within PGA1_c25000 at 2605.065 kb on - strand, within PGA1_c25000 at 2605.095 kb on + strand, within PGA1_c25000 at 2605.109 kb on - strand, within PGA1_c25000 at 2605.167 kb on + strand, within PGA1_c25000 at 2605.169 kb on + strand, within PGA1_c25000 at 2605.203 kb on + strand at 2605.258 kb on - strand at 2605.259 kb on + strand at 2605.299 kb on - strand at 2605.299 kb on - strand at 2605.362 kb on - strand, within PGA1_c25010 at 2605.414 kb on + strand, within PGA1_c25010 at 2605.471 kb on - strand, within PGA1_c25010 at 2605.473 kb on + strand, within PGA1_c25010 at 2605.473 kb on + strand, within PGA1_c25010 at 2605.473 kb on + strand, within PGA1_c25010 at 2605.473 kb on + strand, within PGA1_c25010 at 2605.554 kb on + strand, within PGA1_c25010 at 2605.570 kb on - strand, within PGA1_c25010 at 2605.580 kb on + strand, within PGA1_c25010 at 2605.680 kb on + strand, within PGA1_c25010 at 2605.680 kb on + strand, within PGA1_c25010 at 2605.680 kb on + strand, within PGA1_c25010 at 2605.680 kb on + strand, within PGA1_c25010 at 2605.680 kb on + strand, within PGA1_c25010 at 2605.688 kb on + strand, within PGA1_c25010 at 2605.688 kb on - strand, within PGA1_c25010 at 2605.688 kb on - strand, within PGA1_c25010 at 2605.718 kb on - strand, within PGA1_c25010 at 2605.725 kb on + strand, within PGA1_c25010 at 2605.752 kb on - strand, within PGA1_c25010 at 2605.752 kb on - strand, within PGA1_c25010 at 2605.780 kb on + strand, within PGA1_c25010 at 2605.809 kb on - strand, within PGA1_c25010 at 2605.857 kb on - strand, within PGA1_c25010 at 2605.897 kb on - strand, within PGA1_c25010 at 2605.900 kb on + strand, within PGA1_c25010 at 2605.900 kb on + strand, within PGA1_c25010 at 2605.900 kb on + strand, within PGA1_c25010 at 2605.944 kb on - strand, within PGA1_c25010 at 2606.103 kb on - strand, within PGA1_c25010 at 2606.108 kb on - strand, within PGA1_c25010 at 2606.110 kb on + strand, within PGA1_c25010 at 2606.115 kb on + strand, within PGA1_c25010 at 2606.123 kb on - strand, within PGA1_c25010 at 2606.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,603,783 + -1.0 2,603,826 + +1.0 2,603,829 + +1.9 2,604,738 + -0.1 2,604,746 - -0.1 2,604,787 - +0.7 2,604,834 + PGA1_c25000 0.14 -3.3 2,604,842 + PGA1_c25000 0.15 -2.5 2,604,909 - PGA1_c25000 0.30 +2.6 2,604,930 - PGA1_c25000 0.34 +1.8 2,605,052 - PGA1_c25000 0.60 -2.5 2,605,057 + PGA1_c25000 0.61 -2.4 2,605,062 + PGA1_c25000 0.62 +1.0 2,605,065 - PGA1_c25000 0.63 -3.1 2,605,065 - PGA1_c25000 0.63 +1.1 2,605,095 + PGA1_c25000 0.69 -1.3 2,605,109 - PGA1_c25000 0.72 +3.3 2,605,167 + PGA1_c25000 0.85 -1.9 2,605,169 + PGA1_c25000 0.85 +1.5 2,605,203 + +1.4 2,605,258 - -0.4 2,605,259 + +2.2 2,605,299 - -2.5 2,605,299 - -1.8 2,605,362 - PGA1_c25010 0.12 -1.2 2,605,414 + PGA1_c25010 0.17 -2.6 2,605,471 - PGA1_c25010 0.22 -0.5 2,605,473 + PGA1_c25010 0.23 -2.5 2,605,473 + PGA1_c25010 0.23 +0.6 2,605,473 + PGA1_c25010 0.23 -1.5 2,605,473 + PGA1_c25010 0.23 +0.4 2,605,554 + PGA1_c25010 0.30 +0.2 2,605,570 - PGA1_c25010 0.32 +0.6 2,605,580 + PGA1_c25010 0.33 -1.9 2,605,680 + PGA1_c25010 0.43 -0.3 2,605,680 + PGA1_c25010 0.43 +1.7 2,605,680 + PGA1_c25010 0.43 -2.4 2,605,680 + PGA1_c25010 0.43 +1.9 2,605,680 + PGA1_c25010 0.43 +0.3 2,605,688 + PGA1_c25010 0.43 +1.5 2,605,688 - PGA1_c25010 0.43 +1.1 2,605,688 - PGA1_c25010 0.43 -2.1 2,605,718 - PGA1_c25010 0.46 +1.4 2,605,725 + PGA1_c25010 0.47 -0.1 2,605,752 - PGA1_c25010 0.49 +0.8 2,605,752 - PGA1_c25010 0.49 +2.3 2,605,780 + PGA1_c25010 0.52 -0.0 2,605,809 - PGA1_c25010 0.55 +0.7 2,605,857 - PGA1_c25010 0.60 -1.4 2,605,897 - PGA1_c25010 0.63 +2.2 2,605,900 + PGA1_c25010 0.64 +0.5 2,605,900 + PGA1_c25010 0.64 -2.4 2,605,900 + PGA1_c25010 0.64 +0.7 2,605,944 - PGA1_c25010 0.68 -2.8 2,606,103 - PGA1_c25010 0.83 +1.1 2,606,108 - PGA1_c25010 0.84 -2.1 2,606,110 + PGA1_c25010 0.84 +2.1 2,606,115 + PGA1_c25010 0.85 -1.3 2,606,123 - PGA1_c25010 0.85 +2.0 2,606,218 + +0.1
Or see this region's nucleotide sequence