Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23200 and PGA1_c23210 are separated by 170 nucleotides PGA1_c23210 and PGA1_c23220 are separated by 204 nucleotides
PGA1_c23200: PGA1_c23200 - transposase, at 2,406,627 to 2,407,646
_c23200
PGA1_c23210: PGA1_c23210 - hypothetical protein, at 2,407,817 to 2,408,209
_c23210
PGA1_c23220: PGA1_c23220 - protein HipA, at 2,408,414 to 2,409,706
_c23220
Position (kb)
2407
2408
2409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2406.894 kb on + strand, within PGA1_c23200 at 2406.902 kb on - strand, within PGA1_c23200 at 2406.983 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.016 kb on + strand, within PGA1_c23200 at 2407.026 kb on - strand, within PGA1_c23200 at 2407.034 kb on - strand, within PGA1_c23200 at 2407.272 kb on - strand, within PGA1_c23200 at 2407.276 kb on - strand, within PGA1_c23200 at 2407.317 kb on + strand, within PGA1_c23200 at 2407.329 kb on + strand, within PGA1_c23200 at 2407.378 kb on + strand, within PGA1_c23200 at 2407.391 kb on - strand, within PGA1_c23200 at 2407.413 kb on - strand, within PGA1_c23200 at 2407.423 kb on + strand, within PGA1_c23200 at 2407.490 kb on + strand, within PGA1_c23200 at 2407.490 kb on + strand, within PGA1_c23200 at 2407.509 kb on + strand, within PGA1_c23200 at 2407.509 kb on + strand, within PGA1_c23200 at 2407.546 kb on + strand at 2407.563 kb on - strand at 2407.583 kb on + strand at 2407.641 kb on - strand at 2407.642 kb on + strand at 2407.648 kb on + strand at 2407.650 kb on - strand at 2407.661 kb on - strand at 2407.684 kb on - strand at 2407.723 kb on - strand at 2407.758 kb on + strand at 2407.790 kb on - strand at 2407.798 kb on - strand at 2407.956 kb on + strand, within PGA1_c23210 at 2408.001 kb on + strand, within PGA1_c23210 at 2408.012 kb on + strand, within PGA1_c23210 at 2408.071 kb on + strand, within PGA1_c23210 at 2408.079 kb on - strand, within PGA1_c23210 at 2408.112 kb on - strand, within PGA1_c23210 at 2408.112 kb on - strand, within PGA1_c23210 at 2408.114 kb on + strand, within PGA1_c23210 at 2408.234 kb on - strand at 2408.278 kb on + strand at 2408.298 kb on + strand at 2408.306 kb on - strand at 2408.312 kb on + strand at 2408.341 kb on + strand at 2408.349 kb on - strand at 2408.358 kb on - strand at 2408.506 kb on - strand at 2408.554 kb on - strand, within PGA1_c23220 at 2408.708 kb on + strand, within PGA1_c23220 at 2408.708 kb on + strand, within PGA1_c23220 at 2408.809 kb on + strand, within PGA1_c23220 at 2408.841 kb on + strand, within PGA1_c23220 at 2408.921 kb on + strand, within PGA1_c23220 at 2408.921 kb on + strand, within PGA1_c23220 at 2409.066 kb on - strand, within PGA1_c23220 at 2409.074 kb on - strand, within PGA1_c23220 at 2409.174 kb on + strand, within PGA1_c23220 at 2409.182 kb on - strand, within PGA1_c23220 at 2409.189 kb on + strand, within PGA1_c23220 at 2409.189 kb on - strand, within PGA1_c23220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,406,894 + PGA1_c23200 0.26 +3.5 2,406,902 - PGA1_c23200 0.27 -0.5 2,406,983 + PGA1_c23200 0.35 +2.4 2,407,016 + PGA1_c23200 0.38 +0.4 2,407,016 + PGA1_c23200 0.38 -1.0 2,407,016 + PGA1_c23200 0.38 +0.9 2,407,016 + PGA1_c23200 0.38 -0.7 2,407,016 + PGA1_c23200 0.38 -0.6 2,407,016 + PGA1_c23200 0.38 -0.0 2,407,026 - PGA1_c23200 0.39 +1.0 2,407,034 - PGA1_c23200 0.40 +2.6 2,407,272 - PGA1_c23200 0.63 -0.5 2,407,276 - PGA1_c23200 0.64 +2.2 2,407,317 + PGA1_c23200 0.68 +3.4 2,407,329 + PGA1_c23200 0.69 -1.2 2,407,378 + PGA1_c23200 0.74 -0.7 2,407,391 - PGA1_c23200 0.75 -2.0 2,407,413 - PGA1_c23200 0.77 -1.8 2,407,423 + PGA1_c23200 0.78 +1.0 2,407,490 + PGA1_c23200 0.85 +2.0 2,407,490 + PGA1_c23200 0.85 +0.6 2,407,509 + PGA1_c23200 0.86 +1.5 2,407,509 + PGA1_c23200 0.86 +1.3 2,407,546 + +0.4 2,407,563 - +1.3 2,407,583 + -2.7 2,407,641 - -1.4 2,407,642 + -3.4 2,407,648 + -3.0 2,407,650 - +1.2 2,407,661 - +0.7 2,407,684 - +1.8 2,407,723 - +1.3 2,407,758 + -2.1 2,407,790 - +1.8 2,407,798 - +0.6 2,407,956 + PGA1_c23210 0.35 +0.4 2,408,001 + PGA1_c23210 0.47 +0.4 2,408,012 + PGA1_c23210 0.50 -1.5 2,408,071 + PGA1_c23210 0.65 +3.3 2,408,079 - PGA1_c23210 0.67 +0.6 2,408,112 - PGA1_c23210 0.75 -1.7 2,408,112 - PGA1_c23210 0.75 +0.6 2,408,114 + PGA1_c23210 0.76 -1.7 2,408,234 - +0.5 2,408,278 + +2.2 2,408,298 + +1.4 2,408,306 - -1.3 2,408,312 + -0.0 2,408,341 + -2.3 2,408,349 - +0.5 2,408,358 - +1.5 2,408,506 - -3.0 2,408,554 - PGA1_c23220 0.11 +3.0 2,408,708 + PGA1_c23220 0.23 -0.8 2,408,708 + PGA1_c23220 0.23 +1.9 2,408,809 + PGA1_c23220 0.31 -2.3 2,408,841 + PGA1_c23220 0.33 +0.8 2,408,921 + PGA1_c23220 0.39 -0.4 2,408,921 + PGA1_c23220 0.39 -1.6 2,409,066 - PGA1_c23220 0.50 -0.4 2,409,074 - PGA1_c23220 0.51 +1.8 2,409,174 + PGA1_c23220 0.59 -1.2 2,409,182 - PGA1_c23220 0.59 -2.3 2,409,189 + PGA1_c23220 0.60 -0.0 2,409,189 - PGA1_c23220 0.60 -1.6
Or see this region's nucleotide sequence