Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23210

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23200 and PGA1_c23210 are separated by 170 nucleotidesPGA1_c23210 and PGA1_c23220 are separated by 204 nucleotides PGA1_c23200: PGA1_c23200 - transposase, at 2,406,627 to 2,407,646 _c23200 PGA1_c23210: PGA1_c23210 - hypothetical protein, at 2,407,817 to 2,408,209 _c23210 PGA1_c23220: PGA1_c23220 - protein HipA, at 2,408,414 to 2,409,706 _c23220 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2406.894 kb on + strand, within PGA1_c23200at 2406.902 kb on - strand, within PGA1_c23200at 2406.983 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.016 kb on + strand, within PGA1_c23200at 2407.026 kb on - strand, within PGA1_c23200at 2407.034 kb on - strand, within PGA1_c23200at 2407.272 kb on - strand, within PGA1_c23200at 2407.276 kb on - strand, within PGA1_c23200at 2407.317 kb on + strand, within PGA1_c23200at 2407.329 kb on + strand, within PGA1_c23200at 2407.378 kb on + strand, within PGA1_c23200at 2407.391 kb on - strand, within PGA1_c23200at 2407.413 kb on - strand, within PGA1_c23200at 2407.423 kb on + strand, within PGA1_c23200at 2407.490 kb on + strand, within PGA1_c23200at 2407.490 kb on + strand, within PGA1_c23200at 2407.509 kb on + strand, within PGA1_c23200at 2407.509 kb on + strand, within PGA1_c23200at 2407.546 kb on + strandat 2407.563 kb on - strandat 2407.583 kb on + strandat 2407.641 kb on - strandat 2407.642 kb on + strandat 2407.648 kb on + strandat 2407.650 kb on - strandat 2407.661 kb on - strandat 2407.684 kb on - strandat 2407.723 kb on - strandat 2407.758 kb on + strandat 2407.790 kb on - strandat 2407.798 kb on - strandat 2407.956 kb on + strand, within PGA1_c23210at 2408.001 kb on + strand, within PGA1_c23210at 2408.012 kb on + strand, within PGA1_c23210at 2408.071 kb on + strand, within PGA1_c23210at 2408.079 kb on - strand, within PGA1_c23210at 2408.112 kb on - strand, within PGA1_c23210at 2408.112 kb on - strand, within PGA1_c23210at 2408.114 kb on + strand, within PGA1_c23210at 2408.234 kb on - strandat 2408.278 kb on + strandat 2408.298 kb on + strandat 2408.306 kb on - strandat 2408.312 kb on + strandat 2408.341 kb on + strandat 2408.349 kb on - strandat 2408.358 kb on - strandat 2408.506 kb on - strandat 2408.554 kb on - strand, within PGA1_c23220at 2408.708 kb on + strand, within PGA1_c23220at 2408.708 kb on + strand, within PGA1_c23220at 2408.809 kb on + strand, within PGA1_c23220at 2408.841 kb on + strand, within PGA1_c23220at 2408.921 kb on + strand, within PGA1_c23220at 2408.921 kb on + strand, within PGA1_c23220at 2409.066 kb on - strand, within PGA1_c23220at 2409.074 kb on - strand, within PGA1_c23220at 2409.174 kb on + strand, within PGA1_c23220at 2409.182 kb on - strand, within PGA1_c23220at 2409.189 kb on + strand, within PGA1_c23220at 2409.189 kb on - strand, within PGA1_c23220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,406,894 + PGA1_c23200 0.26 +3.5
2,406,902 - PGA1_c23200 0.27 -0.5
2,406,983 + PGA1_c23200 0.35 +2.4
2,407,016 + PGA1_c23200 0.38 +0.4
2,407,016 + PGA1_c23200 0.38 -1.0
2,407,016 + PGA1_c23200 0.38 +0.9
2,407,016 + PGA1_c23200 0.38 -0.7
2,407,016 + PGA1_c23200 0.38 -0.6
2,407,016 + PGA1_c23200 0.38 -0.0
2,407,026 - PGA1_c23200 0.39 +1.0
2,407,034 - PGA1_c23200 0.40 +2.6
2,407,272 - PGA1_c23200 0.63 -0.5
2,407,276 - PGA1_c23200 0.64 +2.2
2,407,317 + PGA1_c23200 0.68 +3.4
2,407,329 + PGA1_c23200 0.69 -1.2
2,407,378 + PGA1_c23200 0.74 -0.7
2,407,391 - PGA1_c23200 0.75 -2.0
2,407,413 - PGA1_c23200 0.77 -1.8
2,407,423 + PGA1_c23200 0.78 +1.0
2,407,490 + PGA1_c23200 0.85 +2.0
2,407,490 + PGA1_c23200 0.85 +0.6
2,407,509 + PGA1_c23200 0.86 +1.5
2,407,509 + PGA1_c23200 0.86 +1.3
2,407,546 + +0.4
2,407,563 - +1.3
2,407,583 + -2.7
2,407,641 - -1.4
2,407,642 + -3.4
2,407,648 + -3.0
2,407,650 - +1.2
2,407,661 - +0.7
2,407,684 - +1.8
2,407,723 - +1.3
2,407,758 + -2.1
2,407,790 - +1.8
2,407,798 - +0.6
2,407,956 + PGA1_c23210 0.35 +0.4
2,408,001 + PGA1_c23210 0.47 +0.4
2,408,012 + PGA1_c23210 0.50 -1.5
2,408,071 + PGA1_c23210 0.65 +3.3
2,408,079 - PGA1_c23210 0.67 +0.6
2,408,112 - PGA1_c23210 0.75 -1.7
2,408,112 - PGA1_c23210 0.75 +0.6
2,408,114 + PGA1_c23210 0.76 -1.7
2,408,234 - +0.5
2,408,278 + +2.2
2,408,298 + +1.4
2,408,306 - -1.3
2,408,312 + -0.0
2,408,341 + -2.3
2,408,349 - +0.5
2,408,358 - +1.5
2,408,506 - -3.0
2,408,554 - PGA1_c23220 0.11 +3.0
2,408,708 + PGA1_c23220 0.23 -0.8
2,408,708 + PGA1_c23220 0.23 +1.9
2,408,809 + PGA1_c23220 0.31 -2.3
2,408,841 + PGA1_c23220 0.33 +0.8
2,408,921 + PGA1_c23220 0.39 -0.4
2,408,921 + PGA1_c23220 0.39 -1.6
2,409,066 - PGA1_c23220 0.50 -0.4
2,409,074 - PGA1_c23220 0.51 +1.8
2,409,174 + PGA1_c23220 0.59 -1.2
2,409,182 - PGA1_c23220 0.59 -2.3
2,409,189 + PGA1_c23220 0.60 -0.0
2,409,189 - PGA1_c23220 0.60 -1.6

Or see this region's nucleotide sequence