Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00010 and PGA1_c00020 are separated by 309 nucleotides PGA1_c00020 and PGA1_c00030 are separated by 97 nucleotides
PGA1_c00010: PGA1_c00010 - chromosomal replication initiator protein DnaA, at 101 to 1,528
_c00010
PGA1_c00020: PGA1_c00020 - DNA polymerase III subunit beta, at 1,838 to 2,959
_c00020
PGA1_c00030: PGA1_c00030 - DNA replication and repair protein RecF, at 3,057 to 4,154
_c00030
Position (kb)
1
2
3 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1.512 kb on + strand at 1.515 kb on + strand at 1.626 kb on - strand at 1.679 kb on - strand at 1.744 kb on + strand at 1.750 kb on + strand at 2.953 kb on + strand at 2.953 kb on + strand at 2.953 kb on + strand at 2.961 kb on - strand at 2.963 kb on + strand at 2.969 kb on + strand at 2.990 kb on + strand at 2.990 kb on + strand at 2.998 kb on - strand at 2.998 kb on - strand at 3.053 kb on + strand at 3.070 kb on - strand at 3.073 kb on + strand at 3.073 kb on + strand at 3.093 kb on + strand at 3.131 kb on + strand at 3.248 kb on + strand, within PGA1_c00030 at 3.281 kb on + strand, within PGA1_c00030 at 3.289 kb on + strand, within PGA1_c00030 at 3.317 kb on - strand, within PGA1_c00030 at 3.342 kb on - strand, within PGA1_c00030 at 3.386 kb on - strand, within PGA1_c00030 at 3.510 kb on + strand, within PGA1_c00030 at 3.584 kb on - strand, within PGA1_c00030 at 3.640 kb on + strand, within PGA1_c00030 at 3.674 kb on - strand, within PGA1_c00030 at 3.707 kb on - strand, within PGA1_c00030 at 3.732 kb on + strand, within PGA1_c00030 at 3.750 kb on - strand, within PGA1_c00030 at 3.763 kb on + strand, within PGA1_c00030 at 3.799 kb on + strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.807 kb on - strand, within PGA1_c00030 at 3.831 kb on - strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.848 kb on + strand, within PGA1_c00030 at 3.897 kb on + strand, within PGA1_c00030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,512 + +2.6 1,515 + +0.4 1,626 - +0.3 1,679 - +0.4 1,744 + -1.8 1,750 + -3.1 2,953 + +0.6 2,953 + -3.1 2,953 + +1.4 2,961 - +1.8 2,963 + -1.1 2,969 + +0.4 2,990 + -0.8 2,990 + +2.5 2,998 - +0.3 2,998 - +0.7 3,053 + -0.3 3,070 - -1.3 3,073 + -0.6 3,073 + +0.8 3,093 + +0.6 3,131 + +2.2 3,248 + PGA1_c00030 0.17 -2.4 3,281 + PGA1_c00030 0.20 -1.8 3,289 + PGA1_c00030 0.21 -1.7 3,317 - PGA1_c00030 0.24 +1.6 3,342 - PGA1_c00030 0.26 -0.6 3,386 - PGA1_c00030 0.30 +1.7 3,510 + PGA1_c00030 0.41 -2.3 3,584 - PGA1_c00030 0.48 -0.6 3,640 + PGA1_c00030 0.53 -1.1 3,674 - PGA1_c00030 0.56 +0.1 3,707 - PGA1_c00030 0.59 +0.9 3,732 + PGA1_c00030 0.61 -0.4 3,750 - PGA1_c00030 0.63 -0.5 3,763 + PGA1_c00030 0.64 -1.1 3,799 + PGA1_c00030 0.68 -1.7 3,807 - PGA1_c00030 0.68 -1.4 3,807 - PGA1_c00030 0.68 -0.9 3,831 - PGA1_c00030 0.70 -2.7 3,848 + PGA1_c00030 0.72 -2.5 3,848 + PGA1_c00030 0.72 -0.8 3,897 + PGA1_c00030 0.77 +1.2
Or see this region's nucleotide sequence