Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17420

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17410 and PGA1_c17420 are separated by 247 nucleotidesPGA1_c17420 and PGA1_c17430 are separated by 103 nucleotides PGA1_c17410: PGA1_c17410 - MFS type transporter, at 1,821,390 to 1,822,664 _c17410 PGA1_c17420: PGA1_c17420 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA, at 1,822,912 to 1,823,982 _c17420 PGA1_c17430: PGA1_c17430 - hypothetical protein, at 1,824,086 to 1,827,802 _c17430 Position (kb) 1822 1823 1824Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1821.934 kb on + strand, within PGA1_c17410at 1822.023 kb on + strand, within PGA1_c17410at 1822.046 kb on + strand, within PGA1_c17410at 1822.051 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.064 kb on - strand, within PGA1_c17410at 1822.064 kb on - strand, within PGA1_c17410at 1822.104 kb on - strand, within PGA1_c17410at 1822.109 kb on - strand, within PGA1_c17410at 1822.114 kb on - strand, within PGA1_c17410at 1822.223 kb on + strand, within PGA1_c17410at 1822.245 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.263 kb on - strand, within PGA1_c17410at 1822.326 kb on + strand, within PGA1_c17410at 1822.380 kb on - strand, within PGA1_c17410at 1822.397 kb on - strand, within PGA1_c17410at 1822.431 kb on + strand, within PGA1_c17410at 1822.486 kb on + strand, within PGA1_c17410at 1822.554 kb on + strandat 1822.562 kb on - strandat 1822.590 kb on + strandat 1822.632 kb on - strandat 1822.707 kb on + strandat 1822.713 kb on + strandat 1822.725 kb on + strandat 1822.733 kb on - strandat 1822.733 kb on - strandat 1822.837 kb on - strandat 1822.867 kb on + strandat 1822.873 kb on - strandat 1822.875 kb on - strandat 1822.894 kb on - strandat 1822.927 kb on - strandat 1823.149 kb on + strand, within PGA1_c17420at 1823.375 kb on + strand, within PGA1_c17420at 1823.375 kb on + strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.593 kb on + strand, within PGA1_c17420at 1823.593 kb on + strand, within PGA1_c17420at 1823.976 kb on + strandat 1824.016 kb on - strandat 1824.083 kb on + strandat 1824.111 kb on + strandat 1824.142 kb on + strandat 1824.143 kb on - strandat 1824.145 kb on + strandat 1824.264 kb on + strandat 1824.330 kb on + strandat 1824.343 kb on + strandat 1824.410 kb on - strandat 1824.445 kb on - strandat 1824.628 kb on + strand, within PGA1_c17430at 1824.659 kb on + strand, within PGA1_c17430at 1824.909 kb on - strand, within PGA1_c17430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,821,934 + PGA1_c17410 0.43 +1.9
1,822,023 + PGA1_c17410 0.50 -1.4
1,822,046 + PGA1_c17410 0.51 +0.4
1,822,051 + PGA1_c17410 0.52 -1.8
1,822,056 + PGA1_c17410 0.52 -0.2
1,822,056 + PGA1_c17410 0.52 +1.4
1,822,056 + PGA1_c17410 0.52 +1.6
1,822,064 - PGA1_c17410 0.53 +0.2
1,822,064 - PGA1_c17410 0.53 -1.9
1,822,104 - PGA1_c17410 0.56 +2.8
1,822,109 - PGA1_c17410 0.56 -0.3
1,822,114 - PGA1_c17410 0.57 -0.9
1,822,223 + PGA1_c17410 0.65 -1.0
1,822,245 + PGA1_c17410 0.67 +0.3
1,822,255 + PGA1_c17410 0.68 -1.5
1,822,255 + PGA1_c17410 0.68 -1.5
1,822,255 + PGA1_c17410 0.68 -1.5
1,822,255 + PGA1_c17410 0.68 -0.9
1,822,263 - PGA1_c17410 0.68 +0.6
1,822,326 + PGA1_c17410 0.73 -1.5
1,822,380 - PGA1_c17410 0.78 -0.7
1,822,397 - PGA1_c17410 0.79 +0.4
1,822,431 + PGA1_c17410 0.82 +2.9
1,822,486 + PGA1_c17410 0.86 -0.2
1,822,554 + -0.6
1,822,562 - +1.3
1,822,590 + -1.2
1,822,632 - -0.1
1,822,707 + -1.1
1,822,713 + -3.0
1,822,725 + +1.2
1,822,733 - +4.2
1,822,733 - +1.0
1,822,837 - -1.5
1,822,867 + +1.7
1,822,873 - -0.7
1,822,875 - +1.6
1,822,894 - +0.6
1,822,927 - +0.3
1,823,149 + PGA1_c17420 0.22 -0.9
1,823,375 + PGA1_c17420 0.43 -1.7
1,823,375 + PGA1_c17420 0.43 -1.4
1,823,383 - PGA1_c17420 0.44 -0.7
1,823,383 - PGA1_c17420 0.44 -0.5
1,823,383 - PGA1_c17420 0.44 +0.1
1,823,593 + PGA1_c17420 0.64 -1.4
1,823,593 + PGA1_c17420 0.64 +2.1
1,823,976 + -0.0
1,824,016 - +0.6
1,824,083 + -0.3
1,824,111 + -0.5
1,824,142 + -0.5
1,824,143 - -0.2
1,824,145 + -0.7
1,824,264 + -1.1
1,824,330 + -1.7
1,824,343 + -0.2
1,824,410 - -1.2
1,824,445 - -0.9
1,824,628 + PGA1_c17430 0.15 -3.0
1,824,659 + PGA1_c17430 0.15 -1.1
1,824,909 - PGA1_c17430 0.22 -0.7

Or see this region's nucleotide sequence