Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16150 and PGA1_c16160 are separated by 91 nucleotides PGA1_c16160 and PGA1_c16170 overlap by 4 nucleotides
PGA1_c16150: PGA1_c16150 - Predicted secreted hydrolase, at 1,675,775 to 1,676,881
_c16150
PGA1_c16160: PGA1_c16160 - universal stress protein F, at 1,676,973 to 1,677,404
_c16160
PGA1_c16170: PGA1_c16170 - TRAP transporter, 4TM/12TM fusion protein, at 1,677,401 to 1,680,010
_c16170
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1675.997 kb on - strand, within PGA1_c16150 at 1676.025 kb on - strand, within PGA1_c16150 at 1676.066 kb on + strand, within PGA1_c16150 at 1676.105 kb on - strand, within PGA1_c16150 at 1676.110 kb on + strand, within PGA1_c16150 at 1676.118 kb on - strand, within PGA1_c16150 at 1676.137 kb on - strand, within PGA1_c16150 at 1676.267 kb on + strand, within PGA1_c16150 at 1676.267 kb on + strand, within PGA1_c16150 at 1676.288 kb on + strand, within PGA1_c16150 at 1676.309 kb on - strand, within PGA1_c16150 at 1676.319 kb on + strand, within PGA1_c16150 at 1676.362 kb on + strand, within PGA1_c16150 at 1676.453 kb on - strand, within PGA1_c16150 at 1676.462 kb on + strand, within PGA1_c16150 at 1676.591 kb on - strand, within PGA1_c16150 at 1676.672 kb on - strand, within PGA1_c16150 at 1676.778 kb on - strand at 1676.946 kb on + strand at 1676.987 kb on + strand at 1677.038 kb on + strand, within PGA1_c16160 at 1677.058 kb on - strand, within PGA1_c16160 at 1677.080 kb on + strand, within PGA1_c16160 at 1677.088 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.123 kb on + strand, within PGA1_c16160 at 1677.132 kb on - strand, within PGA1_c16160 at 1677.153 kb on - strand, within PGA1_c16160 at 1677.172 kb on + strand, within PGA1_c16160 at 1677.412 kb on - strand at 1677.527 kb on - strand at 1677.546 kb on - strand at 1677.563 kb on + strand at 1677.635 kb on + strand at 1677.654 kb on + strand at 1677.697 kb on + strand, within PGA1_c16170 at 1677.720 kb on - strand, within PGA1_c16170 at 1677.807 kb on + strand, within PGA1_c16170 at 1677.849 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170 at 1677.936 kb on - strand, within PGA1_c16170 at 1677.988 kb on - strand, within PGA1_c16170 at 1678.042 kb on + strand, within PGA1_c16170 at 1678.290 kb on + strand, within PGA1_c16170 at 1678.298 kb on - strand, within PGA1_c16170 at 1678.369 kb on + strand, within PGA1_c16170 at 1678.399 kb on + strand, within PGA1_c16170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,675,997 - PGA1_c16150 0.20 -1.1 1,676,025 - PGA1_c16150 0.23 +1.4 1,676,066 + PGA1_c16150 0.26 -0.9 1,676,105 - PGA1_c16150 0.30 +0.6 1,676,110 + PGA1_c16150 0.30 -1.2 1,676,118 - PGA1_c16150 0.31 +2.8 1,676,137 - PGA1_c16150 0.33 +0.1 1,676,267 + PGA1_c16150 0.44 -0.1 1,676,267 + PGA1_c16150 0.44 -0.7 1,676,288 + PGA1_c16150 0.46 -1.8 1,676,309 - PGA1_c16150 0.48 -0.2 1,676,319 + PGA1_c16150 0.49 +1.2 1,676,362 + PGA1_c16150 0.53 +2.2 1,676,453 - PGA1_c16150 0.61 -1.5 1,676,462 + PGA1_c16150 0.62 +0.1 1,676,591 - PGA1_c16150 0.74 +1.6 1,676,672 - PGA1_c16150 0.81 -1.3 1,676,778 - +1.8 1,676,946 + +0.8 1,676,987 + -0.8 1,677,038 + PGA1_c16160 0.15 -3.0 1,677,058 - PGA1_c16160 0.20 -1.5 1,677,080 + PGA1_c16160 0.25 -2.5 1,677,088 - PGA1_c16160 0.27 -3.6 1,677,093 - PGA1_c16160 0.28 +1.6 1,677,093 - PGA1_c16160 0.28 -0.3 1,677,093 - PGA1_c16160 0.28 +1.7 1,677,093 - PGA1_c16160 0.28 +0.5 1,677,093 - PGA1_c16160 0.28 +0.5 1,677,123 + PGA1_c16160 0.35 +0.8 1,677,132 - PGA1_c16160 0.37 -0.3 1,677,153 - PGA1_c16160 0.42 +0.2 1,677,172 + PGA1_c16160 0.46 -0.3 1,677,412 - +2.3 1,677,527 - +0.8 1,677,546 - +2.0 1,677,563 + -0.9 1,677,635 + +0.0 1,677,654 + -1.0 1,677,697 + PGA1_c16170 0.11 +0.5 1,677,720 - PGA1_c16170 0.12 +2.0 1,677,807 + PGA1_c16170 0.16 -0.5 1,677,849 + PGA1_c16170 0.17 +0.3 1,677,859 + PGA1_c16170 0.18 -1.1 1,677,859 + PGA1_c16170 0.18 -2.5 1,677,859 + PGA1_c16170 0.18 -1.3 1,677,936 - PGA1_c16170 0.20 -2.3 1,677,988 - PGA1_c16170 0.22 -1.1 1,678,042 + PGA1_c16170 0.25 -0.5 1,678,290 + PGA1_c16170 0.34 -1.8 1,678,298 - PGA1_c16170 0.34 -1.8 1,678,369 + PGA1_c16170 0.37 -0.5 1,678,399 + PGA1_c16170 0.38 +0.4
Or see this region's nucleotide sequence