Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16140 and PGA1_c16150 overlap by 11 nucleotides PGA1_c16150 and PGA1_c16160 are separated by 91 nucleotides PGA1_c16160 and PGA1_c16170 overlap by 4 nucleotides
PGA1_c16140: PGA1_c16140 - putative lipoprotein transport protein, at 1,673,326 to 1,675,785
_c16140
PGA1_c16150: PGA1_c16150 - Predicted secreted hydrolase, at 1,675,775 to 1,676,881
_c16150
PGA1_c16160: PGA1_c16160 - universal stress protein F, at 1,676,973 to 1,677,404
_c16160
PGA1_c16170: PGA1_c16170 - TRAP transporter, 4TM/12TM fusion protein, at 1,677,401 to 1,680,010
_c16170
Position (kb)
1675
1676
1677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1674.913 kb on + strand, within PGA1_c16140 at 1674.913 kb on + strand, within PGA1_c16140 at 1674.957 kb on + strand, within PGA1_c16140 at 1675.005 kb on + strand, within PGA1_c16140 at 1675.013 kb on - strand, within PGA1_c16140 at 1675.019 kb on - strand, within PGA1_c16140 at 1675.059 kb on + strand, within PGA1_c16140 at 1675.072 kb on - strand, within PGA1_c16140 at 1675.167 kb on + strand, within PGA1_c16140 at 1675.175 kb on - strand, within PGA1_c16140 at 1675.290 kb on - strand, within PGA1_c16140 at 1675.370 kb on + strand, within PGA1_c16140 at 1675.387 kb on + strand, within PGA1_c16140 at 1675.487 kb on - strand, within PGA1_c16140 at 1675.543 kb on - strand at 1675.572 kb on + strand at 1675.632 kb on - strand at 1675.692 kb on + strand at 1675.732 kb on - strand at 1675.758 kb on + strand at 1675.867 kb on + strand at 1675.875 kb on - strand at 1675.875 kb on - strand at 1675.907 kb on - strand, within PGA1_c16150 at 1675.913 kb on + strand, within PGA1_c16150 at 1675.997 kb on - strand, within PGA1_c16150 at 1676.025 kb on - strand, within PGA1_c16150 at 1676.066 kb on + strand, within PGA1_c16150 at 1676.105 kb on - strand, within PGA1_c16150 at 1676.110 kb on + strand, within PGA1_c16150 at 1676.118 kb on - strand, within PGA1_c16150 at 1676.137 kb on - strand, within PGA1_c16150 at 1676.267 kb on + strand, within PGA1_c16150 at 1676.267 kb on + strand, within PGA1_c16150 at 1676.288 kb on + strand, within PGA1_c16150 at 1676.309 kb on - strand, within PGA1_c16150 at 1676.319 kb on + strand, within PGA1_c16150 at 1676.362 kb on + strand, within PGA1_c16150 at 1676.453 kb on - strand, within PGA1_c16150 at 1676.462 kb on + strand, within PGA1_c16150 at 1676.591 kb on - strand, within PGA1_c16150 at 1676.672 kb on - strand, within PGA1_c16150 at 1676.778 kb on - strand at 1676.946 kb on + strand at 1676.987 kb on + strand at 1677.038 kb on + strand, within PGA1_c16160 at 1677.058 kb on - strand, within PGA1_c16160 at 1677.080 kb on + strand, within PGA1_c16160 at 1677.088 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.093 kb on - strand, within PGA1_c16160 at 1677.123 kb on + strand, within PGA1_c16160 at 1677.132 kb on - strand, within PGA1_c16160 at 1677.153 kb on - strand, within PGA1_c16160 at 1677.172 kb on + strand, within PGA1_c16160 at 1677.412 kb on - strand at 1677.527 kb on - strand at 1677.546 kb on - strand at 1677.563 kb on + strand at 1677.635 kb on + strand at 1677.654 kb on + strand at 1677.697 kb on + strand, within PGA1_c16170 at 1677.720 kb on - strand, within PGA1_c16170 at 1677.807 kb on + strand, within PGA1_c16170 at 1677.849 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170 at 1677.859 kb on + strand, within PGA1_c16170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,674,913 + PGA1_c16140 0.65 +1.1 1,674,913 + PGA1_c16140 0.65 +1.1 1,674,957 + PGA1_c16140 0.66 -0.5 1,675,005 + PGA1_c16140 0.68 -2.0 1,675,013 - PGA1_c16140 0.69 +0.2 1,675,019 - PGA1_c16140 0.69 +0.8 1,675,059 + PGA1_c16140 0.70 -3.4 1,675,072 - PGA1_c16140 0.71 -0.5 1,675,167 + PGA1_c16140 0.75 -2.0 1,675,175 - PGA1_c16140 0.75 -0.6 1,675,290 - PGA1_c16140 0.80 +1.9 1,675,370 + PGA1_c16140 0.83 -0.9 1,675,387 + PGA1_c16140 0.84 -0.5 1,675,487 - PGA1_c16140 0.88 +1.2 1,675,543 - -0.9 1,675,572 + -0.9 1,675,632 - +1.1 1,675,692 + +1.1 1,675,732 - -2.3 1,675,758 + -1.4 1,675,867 + +3.4 1,675,875 - +2.0 1,675,875 - -0.5 1,675,907 - PGA1_c16150 0.12 +0.5 1,675,913 + PGA1_c16150 0.12 -0.9 1,675,997 - PGA1_c16150 0.20 -1.1 1,676,025 - PGA1_c16150 0.23 +1.4 1,676,066 + PGA1_c16150 0.26 -0.9 1,676,105 - PGA1_c16150 0.30 +0.6 1,676,110 + PGA1_c16150 0.30 -1.2 1,676,118 - PGA1_c16150 0.31 +2.8 1,676,137 - PGA1_c16150 0.33 +0.1 1,676,267 + PGA1_c16150 0.44 -0.1 1,676,267 + PGA1_c16150 0.44 -0.7 1,676,288 + PGA1_c16150 0.46 -1.8 1,676,309 - PGA1_c16150 0.48 -0.2 1,676,319 + PGA1_c16150 0.49 +1.2 1,676,362 + PGA1_c16150 0.53 +2.2 1,676,453 - PGA1_c16150 0.61 -1.5 1,676,462 + PGA1_c16150 0.62 +0.1 1,676,591 - PGA1_c16150 0.74 +1.6 1,676,672 - PGA1_c16150 0.81 -1.3 1,676,778 - +1.8 1,676,946 + +0.8 1,676,987 + -0.8 1,677,038 + PGA1_c16160 0.15 -3.0 1,677,058 - PGA1_c16160 0.20 -1.5 1,677,080 + PGA1_c16160 0.25 -2.5 1,677,088 - PGA1_c16160 0.27 -3.6 1,677,093 - PGA1_c16160 0.28 +1.6 1,677,093 - PGA1_c16160 0.28 -0.3 1,677,093 - PGA1_c16160 0.28 +1.7 1,677,093 - PGA1_c16160 0.28 +0.5 1,677,093 - PGA1_c16160 0.28 +0.5 1,677,123 + PGA1_c16160 0.35 +0.8 1,677,132 - PGA1_c16160 0.37 -0.3 1,677,153 - PGA1_c16160 0.42 +0.2 1,677,172 + PGA1_c16160 0.46 -0.3 1,677,412 - +2.3 1,677,527 - +0.8 1,677,546 - +2.0 1,677,563 + -0.9 1,677,635 + +0.0 1,677,654 + -1.0 1,677,697 + PGA1_c16170 0.11 +0.5 1,677,720 - PGA1_c16170 0.12 +2.0 1,677,807 + PGA1_c16170 0.16 -0.5 1,677,849 + PGA1_c16170 0.17 +0.3 1,677,859 + PGA1_c16170 0.18 -1.1 1,677,859 + PGA1_c16170 0.18 -2.5 1,677,859 + PGA1_c16170 0.18 -1.3
Or see this region's nucleotide sequence