Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13460 and PGA1_c13470 are separated by 93 nucleotides PGA1_c13470 and PGA1_c13480 are separated by 131 nucleotides PGA1_c13480 and PGA1_c13490 overlap by 1 nucleotides
PGA1_c13460: PGA1_c13460 - putative sulfurtransferase, at 1,393,331 to 1,393,564
_c13460
PGA1_c13470: PGA1_c13470 - cytochrome C biogenesis protein, transmembrane region, at 1,393,658 to 1,394,410
_c13470
PGA1_c13480: PGA1_c13480 - hypothetical protein, at 1,394,542 to 1,395,870
_c13480
PGA1_c13490: PGA1_c13490 - putative cytochrome P450, at 1,395,870 to 1,397,300
_c13490
Position (kb)
1394
1395
1396 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1393.567 kb on - strand at 1393.585 kb on + strand at 1393.585 kb on + strand at 1393.595 kb on + strand at 1393.603 kb on - strand at 1393.603 kb on - strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.643 kb on + strand at 1394.412 kb on - strand at 1394.419 kb on + strand at 1394.443 kb on + strand at 1394.443 kb on + strand at 1394.443 kb on + strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.518 kb on - strand at 1394.658 kb on + strand at 1394.678 kb on + strand, within PGA1_c13480 at 1394.780 kb on - strand, within PGA1_c13480 at 1394.858 kb on - strand, within PGA1_c13480 at 1394.866 kb on + strand, within PGA1_c13480 at 1394.866 kb on + strand, within PGA1_c13480 at 1394.871 kb on + strand, within PGA1_c13480 at 1394.884 kb on - strand, within PGA1_c13480 at 1394.970 kb on + strand, within PGA1_c13480 at 1394.994 kb on + strand, within PGA1_c13480 at 1395.028 kb on + strand, within PGA1_c13480 at 1395.036 kb on - strand, within PGA1_c13480 at 1395.036 kb on - strand, within PGA1_c13480 at 1395.072 kb on + strand, within PGA1_c13480 at 1395.072 kb on + strand, within PGA1_c13480 at 1395.094 kb on - strand, within PGA1_c13480 at 1395.094 kb on - strand, within PGA1_c13480 at 1395.094 kb on - strand, within PGA1_c13480 at 1395.241 kb on + strand, within PGA1_c13480 at 1395.259 kb on - strand, within PGA1_c13480 at 1395.259 kb on - strand, within PGA1_c13480 at 1395.266 kb on + strand, within PGA1_c13480 at 1395.274 kb on - strand, within PGA1_c13480 at 1395.572 kb on + strand, within PGA1_c13480 at 1395.590 kb on - strand, within PGA1_c13480 at 1395.690 kb on + strand, within PGA1_c13480 at 1395.693 kb on - strand, within PGA1_c13480 at 1395.840 kb on - strand at 1395.875 kb on - strand at 1395.931 kb on + strand at 1395.933 kb on + strand at 1395.933 kb on + strand at 1396.011 kb on + strand at 1396.037 kb on + strand, within PGA1_c13490 at 1396.037 kb on + strand, within PGA1_c13490 at 1396.079 kb on - strand, within PGA1_c13490 at 1396.112 kb on - strand, within PGA1_c13490 at 1396.112 kb on - strand, within PGA1_c13490 at 1396.119 kb on + strand, within PGA1_c13490 at 1396.170 kb on + strand, within PGA1_c13490 at 1396.170 kb on + strand, within PGA1_c13490 at 1396.171 kb on + strand, within PGA1_c13490 at 1396.173 kb on - strand, within PGA1_c13490 at 1396.311 kb on + strand, within PGA1_c13490 at 1396.311 kb on + strand, within PGA1_c13490 at 1396.311 kb on + strand, within PGA1_c13490 at 1396.327 kb on + strand, within PGA1_c13490 at 1396.369 kb on + strand, within PGA1_c13490 at 1396.537 kb on + strand, within PGA1_c13490 at 1396.545 kb on - strand, within PGA1_c13490 at 1396.618 kb on - strand, within PGA1_c13490 at 1396.658 kb on + strand, within PGA1_c13490 at 1396.658 kb on + strand, within PGA1_c13490 at 1396.694 kb on + strand, within PGA1_c13490 at 1396.694 kb on + strand, within PGA1_c13490 at 1396.702 kb on - strand, within PGA1_c13490 at 1396.702 kb on - strand, within PGA1_c13490 at 1396.707 kb on - strand, within PGA1_c13490 at 1396.746 kb on + strand, within PGA1_c13490 at 1396.759 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.764 kb on + strand, within PGA1_c13490 at 1396.769 kb on + strand, within PGA1_c13490 at 1396.769 kb on + strand, within PGA1_c13490 at 1396.769 kb on + strand, within PGA1_c13490 at 1396.769 kb on + strand, within PGA1_c13490 at 1396.769 kb on + strand, within PGA1_c13490 at 1396.772 kb on - strand, within PGA1_c13490 at 1396.834 kb on - strand, within PGA1_c13490
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,393,567 - +1.4 1,393,585 + -3.4 1,393,585 + +1.7 1,393,595 + +1.6 1,393,603 - +0.5 1,393,603 - -1.2 1,393,604 + -0.2 1,393,604 + +2.8 1,393,604 + +1.0 1,393,612 - -1.5 1,393,612 - +0.5 1,393,612 - -2.9 1,393,612 - +0.6 1,393,612 - +1.2 1,393,612 - -0.0 1,393,642 + -0.0 1,393,642 + -0.0 1,393,642 + +2.1 1,393,642 + +1.2 1,393,642 + -0.7 1,393,642 + -1.5 1,393,643 + +1.1 1,394,412 - +1.4 1,394,419 + +1.8 1,394,443 + +2.7 1,394,443 + -3.3 1,394,443 + -1.3 1,394,451 - +1.7 1,394,451 - +0.3 1,394,451 - -2.3 1,394,451 - -0.6 1,394,451 - -3.0 1,394,518 - +1.1 1,394,658 + +2.6 1,394,678 + PGA1_c13480 0.10 +2.9 1,394,780 - PGA1_c13480 0.18 -1.6 1,394,858 - PGA1_c13480 0.24 +0.7 1,394,866 + PGA1_c13480 0.24 -2.3 1,394,866 + PGA1_c13480 0.24 +1.3 1,394,871 + PGA1_c13480 0.25 -0.8 1,394,884 - PGA1_c13480 0.26 +0.6 1,394,970 + PGA1_c13480 0.32 -2.0 1,394,994 + PGA1_c13480 0.34 -0.6 1,395,028 + PGA1_c13480 0.37 -1.3 1,395,036 - PGA1_c13480 0.37 +0.7 1,395,036 - PGA1_c13480 0.37 -1.3 1,395,072 + PGA1_c13480 0.40 -1.9 1,395,072 + PGA1_c13480 0.40 +1.3 1,395,094 - PGA1_c13480 0.42 +0.7 1,395,094 - PGA1_c13480 0.42 +0.4 1,395,094 - PGA1_c13480 0.42 +0.8 1,395,241 + PGA1_c13480 0.53 -1.9 1,395,259 - PGA1_c13480 0.54 -3.3 1,395,259 - PGA1_c13480 0.54 +2.7 1,395,266 + PGA1_c13480 0.54 -2.0 1,395,274 - PGA1_c13480 0.55 -0.3 1,395,572 + PGA1_c13480 0.78 -1.8 1,395,590 - PGA1_c13480 0.79 +2.1 1,395,690 + PGA1_c13480 0.86 -0.5 1,395,693 - PGA1_c13480 0.87 -1.9 1,395,840 - +1.2 1,395,875 - +0.3 1,395,931 + +0.2 1,395,933 + -1.5 1,395,933 + +0.2 1,396,011 + -1.2 1,396,037 + PGA1_c13490 0.12 +2.7 1,396,037 + PGA1_c13490 0.12 +1.7 1,396,079 - PGA1_c13490 0.15 +1.5 1,396,112 - PGA1_c13490 0.17 -0.3 1,396,112 - PGA1_c13490 0.17 +3.3 1,396,119 + PGA1_c13490 0.17 +2.0 1,396,170 + PGA1_c13490 0.21 +1.4 1,396,170 + PGA1_c13490 0.21 -0.2 1,396,171 + PGA1_c13490 0.21 +0.8 1,396,173 - PGA1_c13490 0.21 -0.3 1,396,311 + PGA1_c13490 0.31 -1.2 1,396,311 + PGA1_c13490 0.31 +1.4 1,396,311 + PGA1_c13490 0.31 +0.6 1,396,327 + PGA1_c13490 0.32 -1.0 1,396,369 + PGA1_c13490 0.35 +1.6 1,396,537 + PGA1_c13490 0.47 +1.2 1,396,545 - PGA1_c13490 0.47 +1.9 1,396,618 - PGA1_c13490 0.52 -2.2 1,396,658 + PGA1_c13490 0.55 +0.3 1,396,658 + PGA1_c13490 0.55 +2.0 1,396,694 + PGA1_c13490 0.58 +1.5 1,396,694 + PGA1_c13490 0.58 +0.4 1,396,702 - PGA1_c13490 0.58 -1.8 1,396,702 - PGA1_c13490 0.58 +1.7 1,396,707 - PGA1_c13490 0.58 -0.9 1,396,746 + PGA1_c13490 0.61 -1.6 1,396,759 + PGA1_c13490 0.62 -0.2 1,396,764 + PGA1_c13490 0.62 -1.7 1,396,764 + PGA1_c13490 0.62 -2.7 1,396,764 + PGA1_c13490 0.62 +0.0 1,396,764 + PGA1_c13490 0.62 -2.8 1,396,764 + PGA1_c13490 0.62 -0.7 1,396,764 + PGA1_c13490 0.62 +3.6 1,396,764 + PGA1_c13490 0.62 -1.5 1,396,769 + PGA1_c13490 0.63 +0.7 1,396,769 + PGA1_c13490 0.63 +0.3 1,396,769 + PGA1_c13490 0.63 +1.0 1,396,769 + PGA1_c13490 0.63 -1.5 1,396,769 + PGA1_c13490 0.63 +1.1 1,396,772 - PGA1_c13490 0.63 +0.4 1,396,834 - PGA1_c13490 0.67 -2.5
Or see this region's nucleotide sequence