Strain Fitness in Marinobacter adhaerens HP15 around HP15_1287

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1285 and HP15_1286 are separated by 28 nucleotidesHP15_1286 and HP15_1287 are separated by 2 nucleotidesHP15_1287 and HP15_1288 are separated by 2 nucleotides HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093 _1285 HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838 _1286 HP15_1287: HP15_1287 - electron transport complex, RnfABCDGE type, G subunit, at 1,346,841 to 1,347,542 _1287 HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534 _1288 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1at 1345.853 kb on + strand, within HP15_1285at 1345.853 kb on + strand, within HP15_1285at 1345.895 kb on + strand, within HP15_1285at 1345.907 kb on + strand, within HP15_1285at 1345.947 kb on - strand, within HP15_1285at 1345.955 kb on + strand, within HP15_1285at 1345.990 kb on - strand, within HP15_1285at 1346.017 kb on - strand, within HP15_1285at 1346.059 kb on - strandat 1346.098 kb on + strandat 1346.341 kb on - strand, within HP15_1286at 1346.403 kb on - strand, within HP15_1286at 1346.491 kb on - strand, within HP15_1286at 1346.561 kb on + strand, within HP15_1286at 1346.758 kb on + strand, within HP15_1286at 1346.862 kb on - strandat 1347.013 kb on + strand, within HP15_1287at 1347.357 kb on - strand, within HP15_1287at 1347.398 kb on + strand, within HP15_1287at 1347.406 kb on - strand, within HP15_1287at 1347.542 kb on + strandat 1347.720 kb on + strand, within HP15_1288at 1348.020 kb on - strand, within HP15_1288at 1348.130 kb on + strand, within HP15_1288at 1348.420 kb on + strand, within HP15_1288at 1348.427 kb on - strand, within HP15_1288at 1348.446 kb on - strandat 1348.446 kb on - strandat 1348.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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1,345,853 + HP15_1285 0.62 +0.0
1,345,853 + HP15_1285 0.62 +1.4
1,345,895 + HP15_1285 0.69 -1.8
1,345,907 + HP15_1285 0.71 -0.4
1,345,947 - HP15_1285 0.77 +0.2
1,345,955 + HP15_1285 0.78 +0.1
1,345,990 - HP15_1285 0.84 -1.4
1,346,017 - HP15_1285 0.88 +0.3
1,346,059 - -0.6
1,346,098 + -0.5
1,346,341 - HP15_1286 0.31 -2.2
1,346,403 - HP15_1286 0.39 -0.4
1,346,491 - HP15_1286 0.51 -2.5
1,346,561 + HP15_1286 0.61 -0.2
1,346,758 + HP15_1286 0.89 -2.0
1,346,862 - -0.8
1,347,013 + HP15_1287 0.25 -1.0
1,347,357 - HP15_1287 0.74 -1.9
1,347,398 + HP15_1287 0.79 +1.4
1,347,406 - HP15_1287 0.80 -1.2
1,347,542 + -0.7
1,347,720 + HP15_1288 0.18 -1.9
1,348,020 - HP15_1288 0.48 -1.2
1,348,130 + HP15_1288 0.59 -1.6
1,348,420 + HP15_1288 0.88 -1.8
1,348,427 - HP15_1288 0.89 -1.0
1,348,446 - -1.8
1,348,446 - +0.5
1,348,450 + +0.6

Or see this region's nucleotide sequence