Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13050 and PGA1_c13060 are separated by 84 nucleotides PGA1_c13060 and PGA1_c13070 are separated by 21 nucleotides
PGA1_c13050: PGA1_c13050 - Zn-dependent hydrolases, including glyoxylases, at 1,349,552 to 1,350,466
_c13050
PGA1_c13060: PGA1_c13060 - sensor histidine kinase, at 1,350,551 to 1,351,870
_c13060
PGA1_c13070: PGA1_c13070 - putative oxidoreductase, at 1,351,892 to 1,352,998
_c13070
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1349.635 kb on - strand at 1349.671 kb on - strand, within PGA1_c13050 at 1349.685 kb on + strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.882 kb on + strand, within PGA1_c13050 at 1349.896 kb on + strand, within PGA1_c13050 at 1349.916 kb on - strand, within PGA1_c13050 at 1350.169 kb on - strand, within PGA1_c13050 at 1350.200 kb on + strand, within PGA1_c13050 at 1350.208 kb on - strand, within PGA1_c13050 at 1350.214 kb on + strand, within PGA1_c13050 at 1350.223 kb on - strand, within PGA1_c13050 at 1350.251 kb on + strand, within PGA1_c13050 at 1350.346 kb on + strand, within PGA1_c13050 at 1350.392 kb on - strand at 1350.464 kb on + strand at 1350.469 kb on + strand at 1350.477 kb on - strand at 1350.477 kb on - strand at 1350.477 kb on - strand at 1350.544 kb on - strand at 1350.581 kb on - strand at 1350.597 kb on + strand at 1350.956 kb on - strand, within PGA1_c13060 at 1351.036 kb on + strand, within PGA1_c13060 at 1351.278 kb on + strand, within PGA1_c13060 at 1351.516 kb on - strand, within PGA1_c13060 at 1351.531 kb on + strand, within PGA1_c13060 at 1351.599 kb on - strand, within PGA1_c13060 at 1351.873 kb on + strand at 1351.875 kb on - strand at 1351.908 kb on - strand at 1351.908 kb on - strand at 1351.922 kb on - strand at 1351.922 kb on - strand at 1351.990 kb on + strand at 1352.091 kb on + strand, within PGA1_c13070 at 1352.116 kb on + strand, within PGA1_c13070 at 1352.124 kb on - strand, within PGA1_c13070 at 1352.136 kb on - strand, within PGA1_c13070 at 1352.150 kb on - strand, within PGA1_c13070 at 1352.168 kb on - strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.250 kb on - strand, within PGA1_c13070 at 1352.278 kb on + strand, within PGA1_c13070 at 1352.279 kb on + strand, within PGA1_c13070 at 1352.286 kb on - strand, within PGA1_c13070 at 1352.336 kb on - strand, within PGA1_c13070 at 1352.347 kb on + strand, within PGA1_c13070 at 1352.399 kb on - strand, within PGA1_c13070 at 1352.421 kb on - strand, within PGA1_c13070 at 1352.456 kb on + strand, within PGA1_c13070 at 1352.615 kb on + strand, within PGA1_c13070 at 1352.654 kb on - strand, within PGA1_c13070 at 1352.664 kb on - strand, within PGA1_c13070 at 1352.675 kb on + strand, within PGA1_c13070 at 1352.818 kb on - strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.829 kb on - strand, within PGA1_c13070 at 1352.862 kb on + strand, within PGA1_c13070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,349,635 - -2.7 1,349,671 - PGA1_c13050 0.13 -1.2 1,349,685 + PGA1_c13050 0.15 -1.6 1,349,693 - PGA1_c13050 0.15 +1.4 1,349,693 - PGA1_c13050 0.15 -0.5 1,349,693 - PGA1_c13050 0.15 -0.8 1,349,693 - PGA1_c13050 0.15 -0.5 1,349,882 + PGA1_c13050 0.36 -0.2 1,349,896 + PGA1_c13050 0.38 +1.3 1,349,916 - PGA1_c13050 0.40 -1.0 1,350,169 - PGA1_c13050 0.67 +0.4 1,350,200 + PGA1_c13050 0.71 -0.8 1,350,208 - PGA1_c13050 0.72 +1.4 1,350,214 + PGA1_c13050 0.72 -0.0 1,350,223 - PGA1_c13050 0.73 +2.5 1,350,251 + PGA1_c13050 0.76 -0.2 1,350,346 + PGA1_c13050 0.87 +1.5 1,350,392 - +0.8 1,350,464 + -0.3 1,350,469 + +0.3 1,350,477 - +3.0 1,350,477 - -1.5 1,350,477 - +2.6 1,350,544 - +1.8 1,350,581 - +1.2 1,350,597 + -1.6 1,350,956 - PGA1_c13060 0.31 -1.8 1,351,036 + PGA1_c13060 0.37 -2.4 1,351,278 + PGA1_c13060 0.55 -0.0 1,351,516 - PGA1_c13060 0.73 -1.9 1,351,531 + PGA1_c13060 0.74 -1.2 1,351,599 - PGA1_c13060 0.79 -2.2 1,351,873 + -3.1 1,351,875 - +1.7 1,351,908 - +1.5 1,351,908 - +0.2 1,351,922 - -0.2 1,351,922 - +0.8 1,351,990 + +1.4 1,352,091 + PGA1_c13070 0.18 -2.8 1,352,116 + PGA1_c13070 0.20 -1.0 1,352,124 - PGA1_c13070 0.21 +3.0 1,352,136 - PGA1_c13070 0.22 -3.1 1,352,150 - PGA1_c13070 0.23 -0.0 1,352,168 - PGA1_c13070 0.25 -0.3 1,352,175 + PGA1_c13070 0.26 +1.9 1,352,175 + PGA1_c13070 0.26 +3.4 1,352,175 + PGA1_c13070 0.26 -1.7 1,352,175 + PGA1_c13070 0.26 +2.3 1,352,175 + PGA1_c13070 0.26 -1.1 1,352,175 + PGA1_c13070 0.26 +0.2 1,352,183 - PGA1_c13070 0.26 +0.9 1,352,183 - PGA1_c13070 0.26 +0.2 1,352,183 - PGA1_c13070 0.26 -1.5 1,352,250 - PGA1_c13070 0.32 +0.2 1,352,278 + PGA1_c13070 0.35 -1.1 1,352,279 + PGA1_c13070 0.35 -2.7 1,352,286 - PGA1_c13070 0.36 +2.0 1,352,336 - PGA1_c13070 0.40 -1.5 1,352,347 + PGA1_c13070 0.41 -2.2 1,352,399 - PGA1_c13070 0.46 -2.6 1,352,421 - PGA1_c13070 0.48 -2.3 1,352,456 + PGA1_c13070 0.51 +0.6 1,352,615 + PGA1_c13070 0.65 +0.7 1,352,654 - PGA1_c13070 0.69 -3.1 1,352,664 - PGA1_c13070 0.70 -1.5 1,352,675 + PGA1_c13070 0.71 -0.5 1,352,818 - PGA1_c13070 0.84 -2.2 1,352,821 + PGA1_c13070 0.84 +0.2 1,352,821 + PGA1_c13070 0.84 -0.9 1,352,821 + PGA1_c13070 0.84 -1.3 1,352,821 + PGA1_c13070 0.84 +0.7 1,352,821 + PGA1_c13070 0.84 -1.5 1,352,821 + PGA1_c13070 0.84 +0.9 1,352,821 + PGA1_c13070 0.84 +2.6 1,352,829 - PGA1_c13070 0.85 -1.5 1,352,862 + PGA1_c13070 0.88 +1.2
Or see this region's nucleotide sequence