Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13060

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13050 and PGA1_c13060 are separated by 84 nucleotidesPGA1_c13060 and PGA1_c13070 are separated by 21 nucleotides PGA1_c13050: PGA1_c13050 - Zn-dependent hydrolases, including glyoxylases, at 1,349,552 to 1,350,466 _c13050 PGA1_c13060: PGA1_c13060 - sensor histidine kinase, at 1,350,551 to 1,351,870 _c13060 PGA1_c13070: PGA1_c13070 - putative oxidoreductase, at 1,351,892 to 1,352,998 _c13070 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1349.635 kb on - strandat 1349.671 kb on - strand, within PGA1_c13050at 1349.685 kb on + strand, within PGA1_c13050at 1349.693 kb on - strand, within PGA1_c13050at 1349.693 kb on - strand, within PGA1_c13050at 1349.693 kb on - strand, within PGA1_c13050at 1349.693 kb on - strand, within PGA1_c13050at 1349.882 kb on + strand, within PGA1_c13050at 1349.896 kb on + strand, within PGA1_c13050at 1349.916 kb on - strand, within PGA1_c13050at 1350.169 kb on - strand, within PGA1_c13050at 1350.200 kb on + strand, within PGA1_c13050at 1350.208 kb on - strand, within PGA1_c13050at 1350.214 kb on + strand, within PGA1_c13050at 1350.223 kb on - strand, within PGA1_c13050at 1350.251 kb on + strand, within PGA1_c13050at 1350.346 kb on + strand, within PGA1_c13050at 1350.392 kb on - strandat 1350.464 kb on + strandat 1350.469 kb on + strandat 1350.477 kb on - strandat 1350.477 kb on - strandat 1350.477 kb on - strandat 1350.544 kb on - strandat 1350.581 kb on - strandat 1350.597 kb on + strandat 1350.956 kb on - strand, within PGA1_c13060at 1351.036 kb on + strand, within PGA1_c13060at 1351.278 kb on + strand, within PGA1_c13060at 1351.516 kb on - strand, within PGA1_c13060at 1351.531 kb on + strand, within PGA1_c13060at 1351.599 kb on - strand, within PGA1_c13060at 1351.873 kb on + strandat 1351.875 kb on - strandat 1351.908 kb on - strandat 1351.908 kb on - strandat 1351.922 kb on - strandat 1351.922 kb on - strandat 1351.990 kb on + strandat 1352.091 kb on + strand, within PGA1_c13070at 1352.116 kb on + strand, within PGA1_c13070at 1352.124 kb on - strand, within PGA1_c13070at 1352.136 kb on - strand, within PGA1_c13070at 1352.150 kb on - strand, within PGA1_c13070at 1352.168 kb on - strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.175 kb on + strand, within PGA1_c13070at 1352.183 kb on - strand, within PGA1_c13070at 1352.183 kb on - strand, within PGA1_c13070at 1352.183 kb on - strand, within PGA1_c13070at 1352.250 kb on - strand, within PGA1_c13070at 1352.278 kb on + strand, within PGA1_c13070at 1352.279 kb on + strand, within PGA1_c13070at 1352.286 kb on - strand, within PGA1_c13070at 1352.336 kb on - strand, within PGA1_c13070at 1352.347 kb on + strand, within PGA1_c13070at 1352.399 kb on - strand, within PGA1_c13070at 1352.421 kb on - strand, within PGA1_c13070at 1352.456 kb on + strand, within PGA1_c13070at 1352.615 kb on + strand, within PGA1_c13070at 1352.654 kb on - strand, within PGA1_c13070at 1352.664 kb on - strand, within PGA1_c13070at 1352.675 kb on + strand, within PGA1_c13070at 1352.818 kb on - strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.821 kb on + strand, within PGA1_c13070at 1352.829 kb on - strand, within PGA1_c13070at 1352.862 kb on + strand, within PGA1_c13070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,349,635 - -2.7
1,349,671 - PGA1_c13050 0.13 -1.2
1,349,685 + PGA1_c13050 0.15 -1.6
1,349,693 - PGA1_c13050 0.15 +1.4
1,349,693 - PGA1_c13050 0.15 -0.5
1,349,693 - PGA1_c13050 0.15 -0.8
1,349,693 - PGA1_c13050 0.15 -0.5
1,349,882 + PGA1_c13050 0.36 -0.2
1,349,896 + PGA1_c13050 0.38 +1.3
1,349,916 - PGA1_c13050 0.40 -1.0
1,350,169 - PGA1_c13050 0.67 +0.4
1,350,200 + PGA1_c13050 0.71 -0.8
1,350,208 - PGA1_c13050 0.72 +1.4
1,350,214 + PGA1_c13050 0.72 -0.0
1,350,223 - PGA1_c13050 0.73 +2.5
1,350,251 + PGA1_c13050 0.76 -0.2
1,350,346 + PGA1_c13050 0.87 +1.5
1,350,392 - +0.8
1,350,464 + -0.3
1,350,469 + +0.3
1,350,477 - +3.0
1,350,477 - -1.5
1,350,477 - +2.6
1,350,544 - +1.8
1,350,581 - +1.2
1,350,597 + -1.6
1,350,956 - PGA1_c13060 0.31 -1.8
1,351,036 + PGA1_c13060 0.37 -2.4
1,351,278 + PGA1_c13060 0.55 -0.0
1,351,516 - PGA1_c13060 0.73 -1.9
1,351,531 + PGA1_c13060 0.74 -1.2
1,351,599 - PGA1_c13060 0.79 -2.2
1,351,873 + -3.1
1,351,875 - +1.7
1,351,908 - +1.5
1,351,908 - +0.2
1,351,922 - -0.2
1,351,922 - +0.8
1,351,990 + +1.4
1,352,091 + PGA1_c13070 0.18 -2.8
1,352,116 + PGA1_c13070 0.20 -1.0
1,352,124 - PGA1_c13070 0.21 +3.0
1,352,136 - PGA1_c13070 0.22 -3.1
1,352,150 - PGA1_c13070 0.23 -0.0
1,352,168 - PGA1_c13070 0.25 -0.3
1,352,175 + PGA1_c13070 0.26 +1.9
1,352,175 + PGA1_c13070 0.26 +3.4
1,352,175 + PGA1_c13070 0.26 -1.7
1,352,175 + PGA1_c13070 0.26 +2.3
1,352,175 + PGA1_c13070 0.26 -1.1
1,352,175 + PGA1_c13070 0.26 +0.2
1,352,183 - PGA1_c13070 0.26 +0.9
1,352,183 - PGA1_c13070 0.26 +0.2
1,352,183 - PGA1_c13070 0.26 -1.5
1,352,250 - PGA1_c13070 0.32 +0.2
1,352,278 + PGA1_c13070 0.35 -1.1
1,352,279 + PGA1_c13070 0.35 -2.7
1,352,286 - PGA1_c13070 0.36 +2.0
1,352,336 - PGA1_c13070 0.40 -1.5
1,352,347 + PGA1_c13070 0.41 -2.2
1,352,399 - PGA1_c13070 0.46 -2.6
1,352,421 - PGA1_c13070 0.48 -2.3
1,352,456 + PGA1_c13070 0.51 +0.6
1,352,615 + PGA1_c13070 0.65 +0.7
1,352,654 - PGA1_c13070 0.69 -3.1
1,352,664 - PGA1_c13070 0.70 -1.5
1,352,675 + PGA1_c13070 0.71 -0.5
1,352,818 - PGA1_c13070 0.84 -2.2
1,352,821 + PGA1_c13070 0.84 +0.2
1,352,821 + PGA1_c13070 0.84 -0.9
1,352,821 + PGA1_c13070 0.84 -1.3
1,352,821 + PGA1_c13070 0.84 +0.7
1,352,821 + PGA1_c13070 0.84 -1.5
1,352,821 + PGA1_c13070 0.84 +0.9
1,352,821 + PGA1_c13070 0.84 +2.6
1,352,829 - PGA1_c13070 0.85 -1.5
1,352,862 + PGA1_c13070 0.88 +1.2

Or see this region's nucleotide sequence