Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12790 and PGA1_c12800 are separated by 171 nucleotides PGA1_c12800 and PGA1_c12810 are separated by 327 nucleotides PGA1_c12810 and PGA1_c12820 are separated by 53 nucleotides
PGA1_c12790: PGA1_c12790 - Uncharacterized protein conserved in bacteria, at 1,323,706 to 1,323,969
_c12790
PGA1_c12800: PGA1_c12800 - endoribonuclease-like protein, at 1,324,141 to 1,324,536
_c12800
PGA1_c12810: PGA1_c12810 - pyridine nucleotide-disulphide oxidoreductase-like protein, at 1,324,864 to 1,326,198
_c12810
PGA1_c12820: PGA1_c12820 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) , at 1,326,252 to 1,327,556
_c12820
Position (kb)
1324
1325
1326
1327 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1324.000 kb on - strand at 1324.002 kb on + strand at 1324.002 kb on + strand at 1324.105 kb on - strand at 1324.110 kb on - strand at 1324.121 kb on + strand at 1324.520 kb on + strand at 1324.530 kb on + strand at 1324.534 kb on - strand at 1324.535 kb on + strand at 1324.535 kb on + strand at 1324.543 kb on - strand at 1324.593 kb on + strand at 1324.601 kb on - strand at 1324.619 kb on + strand at 1324.624 kb on + strand at 1324.624 kb on + strand at 1324.635 kb on - strand at 1324.691 kb on - strand at 1324.741 kb on + strand at 1324.825 kb on - strand at 1324.874 kb on + strand at 1324.874 kb on + strand at 1324.874 kb on + strand at 1324.882 kb on - strand at 1324.882 kb on - strand at 1324.882 kb on - strand at 1324.893 kb on - strand at 1324.940 kb on - strand at 1325.005 kb on + strand, within PGA1_c12810 at 1325.013 kb on + strand, within PGA1_c12810 at 1325.015 kb on + strand, within PGA1_c12810 at 1325.015 kb on + strand, within PGA1_c12810 at 1325.023 kb on - strand, within PGA1_c12810 at 1325.028 kb on + strand, within PGA1_c12810 at 1325.079 kb on + strand, within PGA1_c12810 at 1325.079 kb on + strand, within PGA1_c12810 at 1325.079 kb on + strand, within PGA1_c12810 at 1325.079 kb on + strand, within PGA1_c12810 at 1325.079 kb on + strand, within PGA1_c12810 at 1325.087 kb on - strand, within PGA1_c12810 at 1325.087 kb on - strand, within PGA1_c12810 at 1325.120 kb on - strand, within PGA1_c12810 at 1325.193 kb on + strand, within PGA1_c12810 at 1325.193 kb on + strand, within PGA1_c12810 at 1325.323 kb on + strand, within PGA1_c12810 at 1325.323 kb on + strand, within PGA1_c12810 at 1325.333 kb on - strand, within PGA1_c12810 at 1325.450 kb on + strand, within PGA1_c12810 at 1325.525 kb on + strand, within PGA1_c12810 at 1325.533 kb on - strand, within PGA1_c12810 at 1325.535 kb on + strand, within PGA1_c12810 at 1325.559 kb on + strand, within PGA1_c12810 at 1325.565 kb on - strand, within PGA1_c12810 at 1325.567 kb on - strand, within PGA1_c12810 at 1325.605 kb on + strand, within PGA1_c12810 at 1325.688 kb on - strand, within PGA1_c12810 at 1325.748 kb on - strand, within PGA1_c12810 at 1325.753 kb on - strand, within PGA1_c12810 at 1325.816 kb on + strand, within PGA1_c12810 at 1325.824 kb on - strand, within PGA1_c12810 at 1325.859 kb on + strand, within PGA1_c12810 at 1325.881 kb on + strand, within PGA1_c12810 at 1326.010 kb on - strand, within PGA1_c12810 at 1326.035 kb on + strand, within PGA1_c12810 at 1326.113 kb on + strand at 1326.215 kb on + strand at 1326.258 kb on + strand at 1326.368 kb on + strand at 1326.443 kb on + strand, within PGA1_c12820 at 1326.702 kb on + strand, within PGA1_c12820 at 1326.760 kb on + strand, within PGA1_c12820 at 1326.775 kb on + strand, within PGA1_c12820 at 1326.824 kb on + strand, within PGA1_c12820 at 1326.872 kb on - strand, within PGA1_c12820 at 1326.912 kb on - strand, within PGA1_c12820 at 1326.960 kb on - strand, within PGA1_c12820 at 1326.985 kb on - strand, within PGA1_c12820 at 1327.012 kb on + strand, within PGA1_c12820 at 1327.018 kb on - strand, within PGA1_c12820 at 1327.018 kb on - strand, within PGA1_c12820 at 1327.020 kb on - strand, within PGA1_c12820 at 1327.020 kb on - strand, within PGA1_c12820 at 1327.020 kb on - strand, within PGA1_c12820 at 1327.070 kb on + strand, within PGA1_c12820 at 1327.108 kb on - strand, within PGA1_c12820 at 1327.108 kb on - strand, within PGA1_c12820 at 1327.108 kb on - strand, within PGA1_c12820 at 1327.108 kb on - strand, within PGA1_c12820 at 1327.118 kb on + strand, within PGA1_c12820 at 1327.150 kb on + strand, within PGA1_c12820 at 1327.150 kb on + strand, within PGA1_c12820 at 1327.155 kb on + strand, within PGA1_c12820 at 1327.164 kb on - strand, within PGA1_c12820 at 1327.182 kb on + strand, within PGA1_c12820 at 1327.182 kb on + strand, within PGA1_c12820 at 1327.190 kb on - strand, within PGA1_c12820 at 1327.190 kb on - strand, within PGA1_c12820 at 1327.190 kb on - strand, within PGA1_c12820 at 1327.191 kb on - strand, within PGA1_c12820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,324,000 - +0.0 1,324,002 + +1.3 1,324,002 + +1.2 1,324,105 - +2.8 1,324,110 - +1.4 1,324,121 + -0.6 1,324,520 + +1.0 1,324,530 + +1.2 1,324,534 - -2.3 1,324,535 + -0.6 1,324,535 + +2.1 1,324,543 - +2.1 1,324,593 + +0.4 1,324,601 - -1.6 1,324,619 + -1.2 1,324,624 + -0.5 1,324,624 + +1.5 1,324,635 - +0.6 1,324,691 - +0.5 1,324,741 + -2.7 1,324,825 - -3.0 1,324,874 + -1.8 1,324,874 + +2.0 1,324,874 + -0.4 1,324,882 - -0.7 1,324,882 - -1.5 1,324,882 - -2.7 1,324,893 - +2.2 1,324,940 - +1.1 1,325,005 + PGA1_c12810 0.11 +1.8 1,325,013 + PGA1_c12810 0.11 -1.4 1,325,015 + PGA1_c12810 0.11 -2.7 1,325,015 + PGA1_c12810 0.11 +2.0 1,325,023 - PGA1_c12810 0.12 +0.5 1,325,028 + PGA1_c12810 0.12 -0.6 1,325,079 + PGA1_c12810 0.16 -2.3 1,325,079 + PGA1_c12810 0.16 -1.0 1,325,079 + PGA1_c12810 0.16 +0.5 1,325,079 + PGA1_c12810 0.16 +1.1 1,325,079 + PGA1_c12810 0.16 +1.1 1,325,087 - PGA1_c12810 0.17 +3.1 1,325,087 - PGA1_c12810 0.17 +2.4 1,325,120 - PGA1_c12810 0.19 +0.9 1,325,193 + PGA1_c12810 0.25 -2.3 1,325,193 + PGA1_c12810 0.25 -2.4 1,325,323 + PGA1_c12810 0.34 -0.0 1,325,323 + PGA1_c12810 0.34 +2.2 1,325,333 - PGA1_c12810 0.35 -0.8 1,325,450 + PGA1_c12810 0.44 -0.9 1,325,525 + PGA1_c12810 0.50 -2.8 1,325,533 - PGA1_c12810 0.50 +1.6 1,325,535 + PGA1_c12810 0.50 +1.1 1,325,559 + PGA1_c12810 0.52 -0.6 1,325,565 - PGA1_c12810 0.53 -1.7 1,325,567 - PGA1_c12810 0.53 -0.8 1,325,605 + PGA1_c12810 0.56 +2.2 1,325,688 - PGA1_c12810 0.62 +2.4 1,325,748 - PGA1_c12810 0.66 +2.2 1,325,753 - PGA1_c12810 0.67 -2.1 1,325,816 + PGA1_c12810 0.71 +0.2 1,325,824 - PGA1_c12810 0.72 +0.3 1,325,859 + PGA1_c12810 0.75 +2.1 1,325,881 + PGA1_c12810 0.76 +0.2 1,326,010 - PGA1_c12810 0.86 -2.1 1,326,035 + PGA1_c12810 0.88 -3.2 1,326,113 + +2.0 1,326,215 + -0.6 1,326,258 + -2.7 1,326,368 + +0.5 1,326,443 + PGA1_c12820 0.15 -0.4 1,326,702 + PGA1_c12820 0.34 -1.6 1,326,760 + PGA1_c12820 0.39 +1.4 1,326,775 + PGA1_c12820 0.40 +1.4 1,326,824 + PGA1_c12820 0.44 -1.3 1,326,872 - PGA1_c12820 0.48 -0.5 1,326,912 - PGA1_c12820 0.51 -1.5 1,326,960 - PGA1_c12820 0.54 -1.1 1,326,985 - PGA1_c12820 0.56 +1.0 1,327,012 + PGA1_c12820 0.58 +0.1 1,327,018 - PGA1_c12820 0.59 +0.5 1,327,018 - PGA1_c12820 0.59 -1.2 1,327,020 - PGA1_c12820 0.59 +1.7 1,327,020 - PGA1_c12820 0.59 +1.2 1,327,020 - PGA1_c12820 0.59 +1.1 1,327,070 + PGA1_c12820 0.63 -2.2 1,327,108 - PGA1_c12820 0.66 +1.8 1,327,108 - PGA1_c12820 0.66 +3.1 1,327,108 - PGA1_c12820 0.66 +1.9 1,327,108 - PGA1_c12820 0.66 +2.5 1,327,118 + PGA1_c12820 0.66 -1.8 1,327,150 + PGA1_c12820 0.69 +0.1 1,327,150 + PGA1_c12820 0.69 -1.6 1,327,155 + PGA1_c12820 0.69 -1.7 1,327,164 - PGA1_c12820 0.70 -1.9 1,327,182 + PGA1_c12820 0.71 -2.8 1,327,182 + PGA1_c12820 0.71 -0.6 1,327,190 - PGA1_c12820 0.72 -1.9 1,327,190 - PGA1_c12820 0.72 +0.2 1,327,190 - PGA1_c12820 0.72 -0.8 1,327,191 - PGA1_c12820 0.72 -0.3
Or see this region's nucleotide sequence