Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12510 and PGA1_c12520 are separated by 274 nucleotides PGA1_c12520 and PGA1_c12530 are separated by 140 nucleotides
PGA1_c12510: PGA1_c12510 - transcriptional regulator, AraC family, at 1,299,290 to 1,300,297
_c12510
PGA1_c12520: PGA1_c12520 - ATP-dependent Clp protease proteolytic subunit, at 1,300,572 to 1,301,204
_c12520
PGA1_c12530: PGA1_c12530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,301,345 to 1,302,613
_c12530
Position (kb)
1300
1301
1302 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1299.770 kb on + strand, within PGA1_c12510 at 1299.770 kb on + strand, within PGA1_c12510 at 1299.797 kb on + strand, within PGA1_c12510 at 1299.840 kb on - strand, within PGA1_c12510 at 1299.847 kb on - strand, within PGA1_c12510 at 1299.860 kb on - strand, within PGA1_c12510 at 1299.891 kb on + strand, within PGA1_c12510 at 1299.904 kb on - strand, within PGA1_c12510 at 1299.965 kb on + strand, within PGA1_c12510 at 1299.971 kb on - strand, within PGA1_c12510 at 1300.008 kb on + strand, within PGA1_c12510 at 1300.011 kb on - strand, within PGA1_c12510 at 1300.054 kb on + strand, within PGA1_c12510 at 1300.062 kb on - strand, within PGA1_c12510 at 1300.083 kb on + strand, within PGA1_c12510 at 1300.122 kb on + strand, within PGA1_c12510 at 1300.122 kb on + strand, within PGA1_c12510 at 1300.153 kb on - strand, within PGA1_c12510 at 1300.184 kb on + strand, within PGA1_c12510 at 1300.192 kb on + strand, within PGA1_c12510 at 1300.197 kb on + strand at 1300.306 kb on + strand at 1300.342 kb on + strand at 1300.352 kb on + strand at 1300.355 kb on - strand at 1300.355 kb on - strand at 1300.443 kb on + strand at 1300.443 kb on + strand at 1300.448 kb on + strand at 1300.448 kb on + strand at 1300.453 kb on + strand at 1300.453 kb on + strand at 1300.460 kb on + strand at 1300.492 kb on + strand at 1300.492 kb on + strand at 1300.500 kb on - strand at 1300.512 kb on + strand at 1300.513 kb on + strand at 1301.199 kb on - strand at 1301.203 kb on + strand at 1301.224 kb on + strand at 1301.497 kb on + strand, within PGA1_c12530 at 1301.584 kb on + strand, within PGA1_c12530 at 1301.592 kb on - strand, within PGA1_c12530 at 1301.624 kb on + strand, within PGA1_c12530 at 1301.875 kb on + strand, within PGA1_c12530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,299,770 + PGA1_c12510 0.48 -2.2 1,299,770 + PGA1_c12510 0.48 +3.2 1,299,797 + PGA1_c12510 0.50 +3.3 1,299,840 - PGA1_c12510 0.55 -1.0 1,299,847 - PGA1_c12510 0.55 +2.9 1,299,860 - PGA1_c12510 0.57 +1.2 1,299,891 + PGA1_c12510 0.60 +2.4 1,299,904 - PGA1_c12510 0.61 -1.9 1,299,965 + PGA1_c12510 0.67 +0.2 1,299,971 - PGA1_c12510 0.68 -0.2 1,300,008 + PGA1_c12510 0.71 -3.3 1,300,011 - PGA1_c12510 0.72 +1.0 1,300,054 + PGA1_c12510 0.76 -2.8 1,300,062 - PGA1_c12510 0.77 +0.7 1,300,083 + PGA1_c12510 0.79 -0.9 1,300,122 + PGA1_c12510 0.83 +2.2 1,300,122 + PGA1_c12510 0.83 -0.4 1,300,153 - PGA1_c12510 0.86 +0.3 1,300,184 + PGA1_c12510 0.89 -2.0 1,300,192 + PGA1_c12510 0.89 +0.1 1,300,197 + -2.8 1,300,306 + -2.5 1,300,342 + -1.7 1,300,352 + -0.9 1,300,355 - +2.3 1,300,355 - +1.7 1,300,443 + +0.0 1,300,443 + -0.0 1,300,448 + +0.3 1,300,448 + +1.2 1,300,453 + -2.2 1,300,453 + +3.5 1,300,460 + +1.5 1,300,492 + -2.4 1,300,492 + -2.1 1,300,500 - -1.2 1,300,512 + -2.0 1,300,513 + +1.0 1,301,199 - -1.6 1,301,203 + -0.6 1,301,224 + -2.3 1,301,497 + PGA1_c12530 0.12 -2.1 1,301,584 + PGA1_c12530 0.19 -0.8 1,301,592 - PGA1_c12530 0.19 -2.2 1,301,624 + PGA1_c12530 0.22 -1.2 1,301,875 + PGA1_c12530 0.42 -1.2
Or see this region's nucleotide sequence