Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12520

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c12510 and PGA1_c12520 are separated by 274 nucleotidesPGA1_c12520 and PGA1_c12530 are separated by 140 nucleotides PGA1_c12510: PGA1_c12510 - transcriptional regulator, AraC family, at 1,299,290 to 1,300,297 _c12510 PGA1_c12520: PGA1_c12520 - ATP-dependent Clp protease proteolytic subunit, at 1,300,572 to 1,301,204 _c12520 PGA1_c12530: PGA1_c12530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,301,345 to 1,302,613 _c12530 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1299.770 kb on + strand, within PGA1_c12510at 1299.770 kb on + strand, within PGA1_c12510at 1299.797 kb on + strand, within PGA1_c12510at 1299.840 kb on - strand, within PGA1_c12510at 1299.847 kb on - strand, within PGA1_c12510at 1299.860 kb on - strand, within PGA1_c12510at 1299.891 kb on + strand, within PGA1_c12510at 1299.904 kb on - strand, within PGA1_c12510at 1299.965 kb on + strand, within PGA1_c12510at 1299.971 kb on - strand, within PGA1_c12510at 1300.008 kb on + strand, within PGA1_c12510at 1300.011 kb on - strand, within PGA1_c12510at 1300.054 kb on + strand, within PGA1_c12510at 1300.062 kb on - strand, within PGA1_c12510at 1300.083 kb on + strand, within PGA1_c12510at 1300.122 kb on + strand, within PGA1_c12510at 1300.122 kb on + strand, within PGA1_c12510at 1300.153 kb on - strand, within PGA1_c12510at 1300.184 kb on + strand, within PGA1_c12510at 1300.192 kb on + strand, within PGA1_c12510at 1300.197 kb on + strandat 1300.306 kb on + strandat 1300.342 kb on + strandat 1300.352 kb on + strandat 1300.355 kb on - strandat 1300.355 kb on - strandat 1300.443 kb on + strandat 1300.443 kb on + strandat 1300.448 kb on + strandat 1300.448 kb on + strandat 1300.453 kb on + strandat 1300.453 kb on + strandat 1300.460 kb on + strandat 1300.492 kb on + strandat 1300.492 kb on + strandat 1300.500 kb on - strandat 1300.512 kb on + strandat 1300.513 kb on + strandat 1301.199 kb on - strandat 1301.203 kb on + strandat 1301.224 kb on + strandat 1301.497 kb on + strand, within PGA1_c12530at 1301.584 kb on + strand, within PGA1_c12530at 1301.592 kb on - strand, within PGA1_c12530at 1301.624 kb on + strand, within PGA1_c12530at 1301.875 kb on + strand, within PGA1_c12530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
1,299,770 + PGA1_c12510 0.48 -2.2
1,299,770 + PGA1_c12510 0.48 +3.2
1,299,797 + PGA1_c12510 0.50 +3.3
1,299,840 - PGA1_c12510 0.55 -1.0
1,299,847 - PGA1_c12510 0.55 +2.9
1,299,860 - PGA1_c12510 0.57 +1.2
1,299,891 + PGA1_c12510 0.60 +2.4
1,299,904 - PGA1_c12510 0.61 -1.9
1,299,965 + PGA1_c12510 0.67 +0.2
1,299,971 - PGA1_c12510 0.68 -0.2
1,300,008 + PGA1_c12510 0.71 -3.3
1,300,011 - PGA1_c12510 0.72 +1.0
1,300,054 + PGA1_c12510 0.76 -2.8
1,300,062 - PGA1_c12510 0.77 +0.7
1,300,083 + PGA1_c12510 0.79 -0.9
1,300,122 + PGA1_c12510 0.83 +2.2
1,300,122 + PGA1_c12510 0.83 -0.4
1,300,153 - PGA1_c12510 0.86 +0.3
1,300,184 + PGA1_c12510 0.89 -2.0
1,300,192 + PGA1_c12510 0.89 +0.1
1,300,197 + -2.8
1,300,306 + -2.5
1,300,342 + -1.7
1,300,352 + -0.9
1,300,355 - +2.3
1,300,355 - +1.7
1,300,443 + +0.0
1,300,443 + -0.0
1,300,448 + +0.3
1,300,448 + +1.2
1,300,453 + -2.2
1,300,453 + +3.5
1,300,460 + +1.5
1,300,492 + -2.4
1,300,492 + -2.1
1,300,500 - -1.2
1,300,512 + -2.0
1,300,513 + +1.0
1,301,199 - -1.6
1,301,203 + -0.6
1,301,224 + -2.3
1,301,497 + PGA1_c12530 0.12 -2.1
1,301,584 + PGA1_c12530 0.19 -0.8
1,301,592 - PGA1_c12530 0.19 -2.2
1,301,624 + PGA1_c12530 0.22 -1.2
1,301,875 + PGA1_c12530 0.42 -1.2

Or see this region's nucleotide sequence