Strain Fitness in Marinobacter adhaerens HP15 around HP15_1130

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1128 and HP15_1129 are separated by 98 nucleotidesHP15_1129 and HP15_1130 are separated by 3 nucleotidesHP15_1130 and HP15_1131 are separated by 60 nucleotides HP15_1128: HP15_1128 - glutamate synthase domain protein, at 1,156,404 to 1,158,068 _1128 HP15_1129: HP15_1129 - hypothetical protein, at 1,158,167 to 1,158,304 _1129 HP15_1130: HP15_1130 - transporter, BCCT family protein, at 1,158,308 to 1,159,900 _1130 HP15_1131: HP15_1131 - alpha-L-glutamate ligase-like protein, at 1,159,961 to 1,160,869 _1131 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1157.358 kb on + strand, within HP15_1128at 1157.405 kb on + strand, within HP15_1128at 1157.405 kb on + strand, within HP15_1128at 1157.413 kb on - strand, within HP15_1128at 1157.413 kb on - strand, within HP15_1128at 1157.413 kb on - strand, within HP15_1128at 1157.441 kb on + strand, within HP15_1128at 1157.785 kb on - strand, within HP15_1128at 1157.790 kb on - strand, within HP15_1128at 1157.832 kb on - strand, within HP15_1128at 1157.894 kb on + strand, within HP15_1128at 1157.966 kb on - strandat 1157.969 kb on + strandat 1157.969 kb on + strandat 1157.969 kb on + strandat 1157.969 kb on + strandat 1157.977 kb on - strandat 1157.977 kb on - strandat 1158.021 kb on - strandat 1158.112 kb on - strandat 1158.146 kb on - strandat 1158.378 kb on + strandat 1158.586 kb on + strand, within HP15_1130at 1158.589 kb on - strand, within HP15_1130at 1158.673 kb on - strand, within HP15_1130at 1158.697 kb on + strand, within HP15_1130at 1158.739 kb on - strand, within HP15_1130at 1158.801 kb on - strand, within HP15_1130at 1158.808 kb on - strand, within HP15_1130at 1158.898 kb on - strand, within HP15_1130at 1158.917 kb on + strand, within HP15_1130at 1158.935 kb on - strand, within HP15_1130at 1159.257 kb on - strand, within HP15_1130at 1159.267 kb on - strand, within HP15_1130at 1159.306 kb on + strand, within HP15_1130at 1159.326 kb on - strand, within HP15_1130at 1159.494 kb on + strand, within HP15_1130at 1159.646 kb on + strand, within HP15_1130at 1159.720 kb on + strand, within HP15_1130at 1159.736 kb on + strand, within HP15_1130at 1159.744 kb on - strandat 1159.758 kb on - strandat 1159.794 kb on + strandat 1159.807 kb on - strandat 1159.807 kb on - strandat 1159.896 kb on + strandat 1159.904 kb on - strandat 1160.007 kb on + strandat 1160.007 kb on + strandat 1160.015 kb on - strandat 1160.146 kb on + strand, within HP15_1131at 1160.159 kb on - strand, within HP15_1131at 1160.186 kb on + strand, within HP15_1131at 1160.491 kb on - strand, within HP15_1131at 1160.500 kb on + strand, within HP15_1131at 1160.501 kb on + strand, within HP15_1131at 1160.529 kb on - strand, within HP15_1131at 1160.589 kb on - strand, within HP15_1131at 1160.680 kb on - strand, within HP15_1131at 1160.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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1,157,358 + HP15_1128 0.57 -1.5
1,157,405 + HP15_1128 0.60 -0.5
1,157,405 + HP15_1128 0.60 -1.1
1,157,413 - HP15_1128 0.61 -0.5
1,157,413 - HP15_1128 0.61 -0.5
1,157,413 - HP15_1128 0.61 -1.7
1,157,441 + HP15_1128 0.62 -0.6
1,157,785 - HP15_1128 0.83 -1.5
1,157,790 - HP15_1128 0.83 -1.0
1,157,832 - HP15_1128 0.86 +0.4
1,157,894 + HP15_1128 0.89 -0.4
1,157,966 - -0.4
1,157,969 + -1.2
1,157,969 + -2.2
1,157,969 + +0.1
1,157,969 + -0.5
1,157,977 - +0.9
1,157,977 - -0.7
1,158,021 - -0.1
1,158,112 - +0.1
1,158,146 - -0.5
1,158,378 + +1.1
1,158,586 + HP15_1130 0.17 +1.4
1,158,589 - HP15_1130 0.18 +0.5
1,158,673 - HP15_1130 0.23 +1.7
1,158,697 + HP15_1130 0.24 +1.3
1,158,739 - HP15_1130 0.27 +0.5
1,158,801 - HP15_1130 0.31 +1.4
1,158,808 - HP15_1130 0.31 +0.7
1,158,898 - HP15_1130 0.37 +1.2
1,158,917 + HP15_1130 0.38 +1.7
1,158,935 - HP15_1130 0.39 +1.7
1,159,257 - HP15_1130 0.60 +1.3
1,159,267 - HP15_1130 0.60 +1.3
1,159,306 + HP15_1130 0.63 +1.7
1,159,326 - HP15_1130 0.64 +0.3
1,159,494 + HP15_1130 0.74 +0.8
1,159,646 + HP15_1130 0.84 +1.2
1,159,720 + HP15_1130 0.89 +1.9
1,159,736 + HP15_1130 0.90 +1.6
1,159,744 - +1.0
1,159,758 - +0.9
1,159,794 + +1.1
1,159,807 - +1.1
1,159,807 - +1.7
1,159,896 + +0.9
1,159,904 - +0.4
1,160,007 + +0.5
1,160,007 + -0.2
1,160,015 - -0.2
1,160,146 + HP15_1131 0.20 -0.4
1,160,159 - HP15_1131 0.22 +0.4
1,160,186 + HP15_1131 0.25 +0.6
1,160,491 - HP15_1131 0.58 +0.3
1,160,500 + HP15_1131 0.59 -1.3
1,160,501 + HP15_1131 0.59 -0.8
1,160,529 - HP15_1131 0.62 +0.2
1,160,589 - HP15_1131 0.69 +0.8
1,160,680 - HP15_1131 0.79 +0.1
1,160,859 + +0.8

Or see this region's nucleotide sequence