Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01050 and PGA1_c01060 overlap by 4 nucleotides PGA1_c01060 and PGA1_c01070 overlap by 4 nucleotides PGA1_c01070 and PGA1_c01080 are separated by 6 nucleotides PGA1_c01080 and PGA1_c01090 are separated by 2 nucleotides
PGA1_c01050: PGA1_c01050 - putative signal peptidase I, at 98,997 to 99,833
_c01050
PGA1_c01060: PGA1_c01060 - ribonuclease 3, at 99,830 to 100,516
_c01060
PGA1_c01070: PGA1_c01070 - GTP-binding protein Era, at 100,513 to 101,418
_c01070
PGA1_c01080: PGA1_c01080 - Uncharacterized conserved protein, at 101,425 to 101,754
_c01080
PGA1_c01090: PGA1_c01090 - DNA repair protein RecO, at 101,757 to 102,482
_c01090
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.838 kb on + strand at 99.846 kb on - strand at 99.846 kb on - strand at 99.999 kb on - strand, within PGA1_c01060 at 100.182 kb on - strand, within PGA1_c01060 at 100.198 kb on + strand, within PGA1_c01060 at 100.255 kb on + strand, within PGA1_c01060 at 100.263 kb on - strand, within PGA1_c01060 at 100.300 kb on + strand, within PGA1_c01060 at 100.345 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 101.399 kb on + strand at 101.444 kb on + strand at 101.465 kb on - strand, within PGA1_c01080 at 101.465 kb on - strand, within PGA1_c01080 at 101.569 kb on - strand, within PGA1_c01080 at 101.593 kb on + strand, within PGA1_c01080 at 101.595 kb on + strand, within PGA1_c01080 at 101.630 kb on + strand, within PGA1_c01080 at 101.738 kb on + strand at 101.743 kb on + strand at 101.743 kb on + strand at 101.748 kb on + strand at 101.860 kb on - strand, within PGA1_c01090 at 101.860 kb on - strand, within PGA1_c01090 at 101.879 kb on + strand, within PGA1_c01090 at 101.903 kb on - strand, within PGA1_c01090 at 102.086 kb on + strand, within PGA1_c01090 at 102.117 kb on + strand, within PGA1_c01090 at 102.163 kb on + strand, within PGA1_c01090 at 102.224 kb on - strand, within PGA1_c01090 at 102.224 kb on - strand, within PGA1_c01090 at 102.236 kb on - strand, within PGA1_c01090 at 102.270 kb on + strand, within PGA1_c01090 at 102.278 kb on - strand, within PGA1_c01090 at 102.278 kb on - strand, within PGA1_c01090 at 102.300 kb on + strand, within PGA1_c01090 at 102.313 kb on - strand, within PGA1_c01090 at 102.332 kb on - strand, within PGA1_c01090 at 102.372 kb on + strand, within PGA1_c01090 at 102.379 kb on + strand, within PGA1_c01090 at 102.392 kb on - strand, within PGA1_c01090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 99,838 + +0.6 99,846 - -1.9 99,846 - -0.5 99,999 - PGA1_c01060 0.25 +1.8 100,182 - PGA1_c01060 0.51 -2.3 100,198 + PGA1_c01060 0.54 +0.9 100,255 + PGA1_c01060 0.62 +1.6 100,263 - PGA1_c01060 0.63 -2.1 100,300 + PGA1_c01060 0.68 -1.8 100,345 + PGA1_c01060 0.75 +2.3 100,425 + PGA1_c01060 0.87 -2.2 100,425 + PGA1_c01060 0.87 +2.5 101,399 + -1.1 101,444 + -2.5 101,465 - PGA1_c01080 0.12 -1.1 101,465 - PGA1_c01080 0.12 +0.2 101,569 - PGA1_c01080 0.44 -1.0 101,593 + PGA1_c01080 0.51 -2.6 101,595 + PGA1_c01080 0.52 -2.0 101,630 + PGA1_c01080 0.62 -1.7 101,738 + -1.3 101,743 + +3.2 101,743 + -1.4 101,748 + +0.2 101,860 - PGA1_c01090 0.14 +2.3 101,860 - PGA1_c01090 0.14 -0.2 101,879 + PGA1_c01090 0.17 +1.1 101,903 - PGA1_c01090 0.20 -2.1 102,086 + PGA1_c01090 0.45 -0.9 102,117 + PGA1_c01090 0.50 +0.5 102,163 + PGA1_c01090 0.56 -2.5 102,224 - PGA1_c01090 0.64 -2.6 102,224 - PGA1_c01090 0.64 -0.6 102,236 - PGA1_c01090 0.66 -0.6 102,270 + PGA1_c01090 0.71 -1.4 102,278 - PGA1_c01090 0.72 -1.9 102,278 - PGA1_c01090 0.72 -1.7 102,300 + PGA1_c01090 0.75 -0.4 102,313 - PGA1_c01090 0.77 -1.4 102,332 - PGA1_c01090 0.79 -2.8 102,372 + PGA1_c01090 0.85 +0.7 102,379 + PGA1_c01090 0.86 -1.3 102,392 - PGA1_c01090 0.87 -2.1
Or see this region's nucleotide sequence