Strain Fitness in Shewanella amazonensis SB2B around Sama_3511

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
4,144,770	-				+0.5
4,144,797	+				+0.8
4,144,797	+				+0.0
4,144,798	-				+0.1
4,144,876	+				-0.2
4,144,886	+				-0.8
4,144,912	-				-0.2
4,144,912	-				-1.1
4,144,934	-				-0.8
4,144,993	+				-3.2
4,144,993	+				-1.3
4,144,993	+				-3.4
4,144,993	+				-1.5
4,144,993	+				-1.8
4,144,994	-				-0.8
4,144,994	-				-1.6
4,144,994	-				-2.0
4,144,994	-				-1.2
4,145,037	+				-1.1
4,145,037	+				+0.2
4,145,037	+				-0.2
4,145,037	+				-1.2
4,145,037	+				-0.6
4,145,037	+				-0.5
4,145,037	+				-1.1
4,145,038	-				-0.8
4,145,038	-				-1.4
4,145,038	-				-1.2
4,145,038	-				-1.3
4,145,038	-				-1.4
4,145,038	-				-2.0
4,145,038	-				-2.2
4,145,038	-				+0.4
4,145,038	-				-1.4
4,145,066	-				-0.7
4,145,150	+	ompR	Sama_3510	0.21	-1.1
4,145,150	+	ompR	Sama_3510	0.21	-1.8
4,145,150	+	ompR	Sama_3510	0.21	-0.9
4,145,150	+	ompR	Sama_3510	0.21	-1.6
4,145,151	-	ompR	Sama_3510	0.21	-1.9
4,145,151	-	ompR	Sama_3510	0.21	-1.4
4,145,193	+	ompR	Sama_3510	0.27	-2.1
4,145,193	+	ompR	Sama_3510	0.27	-0.7
4,145,193	+	ompR	Sama_3510	0.27	+1.3
4,145,193	+	ompR	Sama_3510	0.27	-0.5
4,145,232	+	ompR	Sama_3510	0.33	-0.1
4,145,232	+	ompR	Sama_3510	0.33	-1.6
4,145,232	+	ompR	Sama_3510	0.33	-1.6
4,145,232	+	ompR	Sama_3510	0.33	-2.5
4,145,232	+	ompR	Sama_3510	0.33	-2.1
4,145,232	+	ompR	Sama_3510	0.33	-1.8
4,145,232	+	ompR	Sama_3510	0.33	-2.8
4,145,233	-	ompR	Sama_3510	0.33	-2.6
4,145,233	-	ompR	Sama_3510	0.33	-1.4
4,145,233	-	ompR	Sama_3510	0.33	+1.1
4,145,233	-	ompR	Sama_3510	0.33	-2.1
4,145,235	+	ompR	Sama_3510	0.33	-1.5
4,145,235	+	ompR	Sama_3510	0.33	-1.0
4,145,235	+	ompR	Sama_3510	0.33	-0.8
4,145,236	-	ompR	Sama_3510	0.33	-2.7
4,145,236	-	ompR	Sama_3510	0.33	-2.6
4,145,236	-	ompR	Sama_3510	0.33	+0.0
4,145,302	+	ompR	Sama_3510	0.42	-0.1
4,145,302	+	ompR	Sama_3510	0.42	-2.3
4,145,303	-	ompR	Sama_3510	0.42	-2.3
4,145,303	-	ompR	Sama_3510	0.42	-1.1
4,145,303	-	ompR	Sama_3510	0.42	-1.9
4,145,320	-	ompR	Sama_3510	0.45	-2.1
4,145,344	-	ompR	Sama_3510	0.48	-0.6
4,145,455	+	ompR	Sama_3510	0.63	-1.6
4,145,455	+	ompR	Sama_3510	0.63	-1.3
4,145,505	+	ompR	Sama_3510	0.70	-0.8
4,145,505	+	ompR	Sama_3510	0.70	-1.1
4,145,505	+	ompR	Sama_3510	0.70	+0.1
4,145,506	-	ompR	Sama_3510	0.70	-0.6
4,145,506	-	ompR	Sama_3510	0.70	-2.6
4,145,506	-	ompR	Sama_3510	0.70	-0.2
4,145,548	-	ompR	Sama_3510	0.76	-1.4
4,145,548	-	ompR	Sama_3510	0.76	-0.4
4,145,659	+				-0.5
4,145,659	+				-0.8
4,145,659	+				-2.6
4,145,659	+				-1.4
4,145,659	+				-0.8
4,145,659	+				+1.3
4,145,659	+				-0.8
4,145,659	+				-1.1
4,145,659	+				-0.8
4,145,660	-				-0.5
4,145,660	-				+1.2
4,145,660	-				-3.7
4,145,660	-				-0.4
4,145,660	-				-3.0
4,145,660	-				-1.6
4,145,660	-				-1.3
4,145,660	-				-1.9
4,145,660	-				-0.8
4,145,660	-				-0.8
4,145,660	-				-1.4
4,145,662	-				-0.8
4,145,686	+				-2.4
4,145,686	+				-1.4
4,145,686	+				-0.6
4,145,686	+				-2.6
4,145,686	+				-3.6
4,145,687	-				-1.4
4,145,687	-				-0.6
4,145,687	-				-1.7
4,145,696	+				-0.9
4,145,719	+				+0.7
4,145,802	-				-1.4
4,145,820	+				-1.8
4,145,837	-				-1.6
4,145,837	-				-1.2
4,145,854	+				-1.4
4,145,855	-				-1.8
4,145,872	+	envZ	Sama_3511	0.10	-0.1
4,145,873	-	envZ	Sama_3511	0.10	-1.7
4,145,873	-	envZ	Sama_3511	0.10	-1.6
4,145,919	+	envZ	Sama_3511	0.14	-1.1
4,145,947	+	envZ	Sama_3511	0.16	-2.6
4,146,035	+	envZ	Sama_3511	0.23	-1.2
4,146,035	+	envZ	Sama_3511	0.23	-0.8
4,146,036	-	envZ	Sama_3511	0.23	-1.6
4,146,049	+	envZ	Sama_3511	0.24	+0.8
4,146,049	+	envZ	Sama_3511	0.24	-1.1
4,146,049	+	envZ	Sama_3511	0.24	-0.9
4,146,049	+	envZ	Sama_3511	0.24	-0.4
4,146,050	-	envZ	Sama_3511	0.24	-1.6
4,146,050	-	envZ	Sama_3511	0.24	-1.4
4,146,050	-	envZ	Sama_3511	0.24	-0.1
4,146,050	-	envZ	Sama_3511	0.24	-3.2
4,146,052	+	envZ	Sama_3511	0.24	-0.8
4,146,053	-	envZ	Sama_3511	0.24	-0.4
4,146,082	+	envZ	Sama_3511	0.26	-0.1
4,146,082	+	envZ	Sama_3511	0.26	-1.0
4,146,082	+	envZ	Sama_3511	0.26	-0.7
4,146,104	+	envZ	Sama_3511	0.28	+0.4
4,146,104	+	envZ	Sama_3511	0.28	-1.6
4,146,104	+	envZ	Sama_3511	0.28	-2.1
4,146,104	+	envZ	Sama_3511	0.28	-1.8
4,146,105	-	envZ	Sama_3511	0.28	-2.0
4,146,105	-	envZ	Sama_3511	0.28	-2.4
4,146,105	-	envZ	Sama_3511	0.28	-2.0
4,146,105	-	envZ	Sama_3511	0.28	-1.4
4,146,105	-	envZ	Sama_3511	0.28	-2.3
4,146,105	-	envZ	Sama_3511	0.28	-1.1
4,146,105	-	envZ	Sama_3511	0.28	-0.8
4,146,170	+	envZ	Sama_3511	0.33	+0.2
4,146,170	+	envZ	Sama_3511	0.33	-1.4
4,146,223	+	envZ	Sama_3511	0.37	-2.7
4,146,223	+	envZ	Sama_3511	0.37	-1.1
4,146,223	+	envZ	Sama_3511	0.37	-1.2
4,146,223	+	envZ	Sama_3511	0.37	-0.8
4,146,223	+	envZ	Sama_3511	0.37	+0.8
4,146,224	-	envZ	Sama_3511	0.37	-1.4
4,146,224	-	envZ	Sama_3511	0.37	-2.0
4,146,224	-	envZ	Sama_3511	0.37	-0.4
4,146,224	-	envZ	Sama_3511	0.37	-0.1
4,146,294	+	envZ	Sama_3511	0.42	-1.1
4,146,323	+	envZ	Sama_3511	0.44	-3.3
4,146,323	+	envZ	Sama_3511	0.44	-2.0
4,146,374	+	envZ	Sama_3511	0.48	-1.2
4,146,375	-	envZ	Sama_3511	0.48	-1.1
4,146,375	-	envZ	Sama_3511	0.48	-1.2
4,146,529	+	envZ	Sama_3511	0.60	-1.8
4,146,529	+	envZ	Sama_3511	0.60	+0.2
4,146,530	-	envZ	Sama_3511	0.60	-1.4
4,146,530	-	envZ	Sama_3511	0.60	-2.8
4,146,530	-	envZ	Sama_3511	0.60	-2.6
4,146,530	-	envZ	Sama_3511	0.60	-2.2
4,146,530	-	envZ	Sama_3511	0.60	-1.2
4,146,595	+	envZ	Sama_3511	0.65	-1.9
4,146,595	+	envZ	Sama_3511	0.65	-0.7
4,146,595	+	envZ	Sama_3511	0.65	-2.0
4,146,595	+	envZ	Sama_3511	0.65	-0.9
4,146,596	-	envZ	Sama_3511	0.65	+0.2
4,146,596	-	envZ	Sama_3511	0.65	-0.9
4,146,596	-	envZ	Sama_3511	0.65	-1.8
4,146,599	+	envZ	Sama_3511	0.65	+1.0
4,146,599	+	envZ	Sama_3511	0.65	-1.7
4,146,599	+	envZ	Sama_3511	0.65	-1.5
4,146,599	+	envZ	Sama_3511	0.65	-0.4
4,146,599	+	envZ	Sama_3511	0.65	-1.6
4,146,599	+	envZ	Sama_3511	0.65	-1.5
4,146,599	+	envZ	Sama_3511	0.65	-2.4
4,146,599	+	envZ	Sama_3511	0.65	-1.4
4,146,599	+	envZ	Sama_3511	0.65	-1.4
4,146,599	+	envZ	Sama_3511	0.65	-1.2
4,146,599	+	envZ	Sama_3511	0.65	-0.8
4,146,600	-	envZ	Sama_3511	0.66	-2.1
4,146,600	-	envZ	Sama_3511	0.66	-1.7
4,146,600	-	envZ	Sama_3511	0.66	-2.1
4,146,600	-	envZ	Sama_3511	0.66	-1.5
4,146,600	-	envZ	Sama_3511	0.66	-1.0
4,146,600	-	envZ	Sama_3511	0.66	-2.2
4,146,600	-	envZ	Sama_3511	0.66	-0.9
4,146,600	-	envZ	Sama_3511	0.66	-2.2
4,146,600	-	envZ	Sama_3511	0.66	-1.1
4,146,600	-	envZ	Sama_3511	0.66	-1.8
4,146,600	-	envZ	Sama_3511	0.66	-1.7
4,146,600	-	envZ	Sama_3511	0.66	-1.9
4,146,658	+	envZ	Sama_3511	0.70	-0.4
4,146,659	-	envZ	Sama_3511	0.70	-1.9
4,146,659	-	envZ	Sama_3511	0.70	+0.5
4,146,659	-	envZ	Sama_3511	0.70	-1.2
4,146,689	+	envZ	Sama_3511	0.72	-2.2
4,146,689	+	envZ	Sama_3511	0.72	+0.8
4,146,690	-	envZ	Sama_3511	0.72	-0.6
4,146,714	+	envZ	Sama_3511	0.74	-0.7
4,146,714	+	envZ	Sama_3511	0.74	-2.4
4,146,714	+	envZ	Sama_3511	0.74	-2.2
4,146,714	+	envZ	Sama_3511	0.74	-1.4
4,146,716	+	envZ	Sama_3511	0.74	-1.5
4,146,717	-	envZ	Sama_3511	0.74	-0.8
4,146,760	-	envZ	Sama_3511	0.78	-1.8
4,146,785	-	envZ	Sama_3511	0.80	+0.8
4,146,800	+	envZ	Sama_3511	0.81	-0.4
4,146,800	+	envZ	Sama_3511	0.81	-2.2
4,146,853	-	envZ	Sama_3511	0.85	-1.9
4,146,904	-	envZ	Sama_3511	0.89	-1.5
4,146,958	-				-1.8
4,147,034	+				-1.9
4,147,064	+				-0.1
4,147,064	+				-0.6
4,147,078	+				-0.5
4,147,078	+				-1.3
4,147,079	-				-0.1
4,147,086	+				+0.3
4,147,086	+				+0.0
4,147,087	-				+0.2
4,147,087	-				-0.7
4,147,087	-				-0.4
4,147,107	+				-1.0
4,147,108	-				+0.3
4,147,169	-				+0.0
4,147,299	+				+0.3
4,147,375	+		Sama_3512	0.13	+0.1
4,147,376	-		Sama_3512	0.13	-2.1
4,147,400	-		Sama_3512	0.14	-0.4
4,147,400	-		Sama_3512	0.14	-0.7
4,147,446	+		Sama_3512	0.17	+0.6
4,147,447	-		Sama_3512	0.17	+0.5
4,147,489	+		Sama_3512	0.19	+0.4
4,147,490	-		Sama_3512	0.19	-1.3
4,147,539	+		Sama_3512	0.21	+0.4
4,147,539	+		Sama_3512	0.21	-0.5
4,147,540	-		Sama_3512	0.22	+0.2
4,147,540	-		Sama_3512	0.22	-1.3
4,147,620	+		Sama_3512	0.26	-0.1
4,147,620	+		Sama_3512	0.26	-0.2
4,147,647	+		Sama_3512	0.27	-0.7
4,147,647	+		Sama_3512	0.27	-1.0
4,147,652	+		Sama_3512	0.27	+0.3
4,147,652	+		Sama_3512	0.27	-0.0
4,147,652	+		Sama_3512	0.27	-0.5
4,147,652	+		Sama_3512	0.27	-0.9
4,147,652	+		Sama_3512	0.27	-0.1
4,147,652	+		Sama_3512	0.27	-1.2
4,147,653	-		Sama_3512	0.27	+0.1
4,147,653	-		Sama_3512	0.27	-0.0
4,147,653	-		Sama_3512	0.27	-0.0
4,147,653	-		Sama_3512	0.27	+0.1
4,147,653	-		Sama_3512	0.27	-0.1
4,147,664	+		Sama_3512	0.28	+0.2
4,147,664	+		Sama_3512	0.28	-0.9
4,147,664	+		Sama_3512	0.28	+0.6
4,147,664	+		Sama_3512	0.28	+0.5
4,147,665	-		Sama_3512	0.28	-0.6
4,147,674	-		Sama_3512	0.28	+0.3
4,147,674	-		Sama_3512	0.28	+0.3
4,147,741	+		Sama_3512	0.32	-1.6
4,147,741	+		Sama_3512	0.32	+0.2
4,147,741	+		Sama_3512	0.32	-1.1
4,147,741	+		Sama_3512	0.32	-0.6
4,147,742	-		Sama_3512	0.32	-0.1
4,147,742	-		Sama_3512	0.32	+0.2
4,147,742	-		Sama_3512	0.32	+0.1
4,147,742	-		Sama_3512	0.32	-0.4
4,147,751	-		Sama_3512	0.32	+0.2
4,147,877	+		Sama_3512	0.39	+1.8
4,147,878	-		Sama_3512	0.39	-0.2
4,147,954	+		Sama_3512	0.43	-0.5
4,147,954	+		Sama_3512	0.43	+0.8
4,148,015	+		Sama_3512	0.46	-0.1
4,148,015	+		Sama_3512	0.46	+0.3
4,148,015	+		Sama_3512	0.46	+0.8
4,148,015	+		Sama_3512	0.46	+0.4
4,148,016	-		Sama_3512	0.46	-0.2
4,148,016	-		Sama_3512	0.46	+1.4
4,148,016	-		Sama_3512	0.46	-0.4
4,148,022	+		Sama_3512	0.46	+0.5
4,148,022	+		Sama_3512	0.46	-0.9
4,148,022	+		Sama_3512	0.46	-0.6
4,148,022	+		Sama_3512	0.46	-2.1
4,148,023	-		Sama_3512	0.46	-0.4
4,148,045	+		Sama_3512	0.47	+0.4
4,148,046	-		Sama_3512	0.48	+0.3
4,148,046	-		Sama_3512	0.48	-0.7
4,148,046	-		Sama_3512	0.48	-0.2
4,148,046	-		Sama_3512	0.48	+0.3
4,148,046	-		Sama_3512	0.48	+1.2
4,148,049	+		Sama_3512	0.48	-2.3
4,148,049	+		Sama_3512	0.48	+2.3
4,148,049	+		Sama_3512	0.48	-0.2
4,148,049	+		Sama_3512	0.48	-0.2
4,148,049	+		Sama_3512	0.48	-0.2
4,148,049	+		Sama_3512	0.48	+0.2
4,148,050	-		Sama_3512	0.48	+0.2
4,148,050	-		Sama_3512	0.48	-1.5
4,148,050	-		Sama_3512	0.48	-0.5
4,148,050	-		Sama_3512	0.48	-0.2
4,148,050	-		Sama_3512	0.48	+0.2
4,148,050	-		Sama_3512	0.48	+0.2
4,148,050	-		Sama_3512	0.48	-1.4
4,148,050	-		Sama_3512	0.48	-0.4
4,148,050	-		Sama_3512	0.48	-0.6
4,148,050	-		Sama_3512	0.48	+0.4
4,148,050	-		Sama_3512	0.48	+0.3
4,148,050	-		Sama_3512	0.48	+0.0
4,148,050	-		Sama_3512	0.48	-0.2