Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3385 and Sama_3386 overlap by 4 nucleotides Sama_3386 and Sama_3387 are separated by 54 nucleotides Sama_3387 and Sama_3388 are separated by 5 nucleotides
Sama_3385: Sama_3385 - histidine ammonia-lyase (RefSeq), at 4,012,189 to 4,013,745
_3385
Sama_3386: Sama_3386 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 4,013,742 to 4,014,173
_3386
Sama_3387: Sama_3387 - hypothetical protein (RefSeq), at 4,014,228 to 4,014,959
_3387
Sama_3388: Sama_3388 - hypothetical protein (RefSeq), at 4,014,965 to 4,017,364
_3388
Position (kb)
4014
4015 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4013.299 kb on - strand, within Sama_3385 at 4013.299 kb on - strand, within Sama_3385 at 4013.385 kb on - strand, within Sama_3385 at 4013.418 kb on + strand, within Sama_3385 at 4013.418 kb on + strand, within Sama_3385 at 4013.445 kb on + strand, within Sama_3385 at 4013.446 kb on - strand, within Sama_3385 at 4013.565 kb on + strand, within Sama_3385 at 4013.826 kb on + strand, within Sama_3386 at 4013.826 kb on + strand, within Sama_3386 at 4013.826 kb on + strand, within Sama_3386 at 4013.826 kb on + strand, within Sama_3386 at 4013.826 kb on + strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.827 kb on - strand, within Sama_3386 at 4013.835 kb on + strand, within Sama_3386 at 4013.835 kb on + strand, within Sama_3386 at 4013.836 kb on - strand, within Sama_3386 at 4013.836 kb on - strand, within Sama_3386 at 4013.836 kb on - strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.877 kb on + strand, within Sama_3386 at 4013.878 kb on - strand, within Sama_3386 at 4013.878 kb on - strand, within Sama_3386 at 4013.878 kb on - strand, within Sama_3386 at 4013.878 kb on - strand, within Sama_3386 at 4013.883 kb on + strand, within Sama_3386 at 4013.883 kb on + strand, within Sama_3386 at 4013.884 kb on - strand, within Sama_3386 at 4013.940 kb on + strand, within Sama_3386 at 4013.940 kb on + strand, within Sama_3386 at 4013.940 kb on + strand, within Sama_3386 at 4013.940 kb on + strand, within Sama_3386 at 4013.941 kb on - strand, within Sama_3386 at 4013.941 kb on - strand, within Sama_3386 at 4013.941 kb on - strand, within Sama_3386 at 4013.941 kb on - strand, within Sama_3386 at 4014.022 kb on - strand, within Sama_3386 at 4014.022 kb on - strand, within Sama_3386 at 4014.066 kb on + strand, within Sama_3386 at 4014.066 kb on + strand, within Sama_3386 at 4014.095 kb on + strand, within Sama_3386 at 4014.095 kb on + strand, within Sama_3386 at 4014.095 kb on + strand, within Sama_3386 at 4014.095 kb on + strand, within Sama_3386 at 4014.095 kb on + strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.096 kb on - strand, within Sama_3386 at 4014.127 kb on + strand, within Sama_3386 at 4014.127 kb on + strand, within Sama_3386 at 4014.127 kb on + strand, within Sama_3386 at 4014.128 kb on - strand, within Sama_3386 at 4014.208 kb on + strand at 4014.208 kb on + strand at 4014.208 kb on + strand at 4014.209 kb on - strand at 4014.209 kb on - strand at 4014.209 kb on - strand at 4014.209 kb on - strand at 4014.213 kb on + strand at 4014.213 kb on + strand at 4014.213 kb on + strand at 4014.213 kb on + strand at 4014.213 kb on + strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.214 kb on - strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.215 kb on + strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.216 kb on - strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.223 kb on + strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.224 kb on - strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.227 kb on + strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.228 kb on - strand at 4014.260 kb on - strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.269 kb on + strand at 4014.270 kb on - strand at 4014.270 kb on - strand at 4014.270 kb on - strand at 4014.270 kb on - strand at 4014.270 kb on - strand at 4014.308 kb on - strand, within Sama_3387 at 4014.320 kb on + strand, within Sama_3387 at 4014.320 kb on + strand, within Sama_3387 at 4014.424 kb on + strand, within Sama_3387 at 4014.424 kb on + strand, within Sama_3387 at 4014.511 kb on + strand, within Sama_3387 at 4014.521 kb on - strand, within Sama_3387 at 4014.599 kb on + strand, within Sama_3387 at 4014.599 kb on + strand, within Sama_3387 at 4014.600 kb on - strand, within Sama_3387 at 4014.600 kb on - strand, within Sama_3387 at 4014.604 kb on + strand, within Sama_3387 at 4014.641 kb on + strand, within Sama_3387 at 4014.642 kb on - strand, within Sama_3387 at 4014.728 kb on + strand, within Sama_3387 at 4014.730 kb on + strand, within Sama_3387 at 4014.830 kb on + strand, within Sama_3387 at 4014.830 kb on + strand, within Sama_3387 at 4014.830 kb on + strand, within Sama_3387 at 4014.849 kb on - strand, within Sama_3387 at 4014.849 kb on - strand, within Sama_3387 at 4014.958 kb on - strand at 4014.958 kb on - strand at 4014.963 kb on - strand at 4014.963 kb on - strand at 4014.963 kb on - strand at 4014.994 kb on + strand at 4014.994 kb on + strand at 4015.035 kb on + strand at 4015.035 kb on + strand at 4015.075 kb on + strand at 4015.075 kb on + strand at 4015.075 kb on + strand at 4015.075 kb on + strand at 4015.076 kb on - strand at 4015.076 kb on - strand at 4015.199 kb on + strand at 4015.199 kb on + strand at 4015.200 kb on - strand at 4015.328 kb on + strand, within Sama_3388 at 4015.337 kb on + strand, within Sama_3388 at 4015.407 kb on + strand, within Sama_3388 at 4015.407 kb on + strand, within Sama_3388 at 4015.407 kb on + strand, within Sama_3388 at 4015.407 kb on + strand, within Sama_3388 at 4015.407 kb on + strand, within Sama_3388 at 4015.408 kb on - strand, within Sama_3388 at 4015.408 kb on - strand, within Sama_3388 at 4015.408 kb on - strand, within Sama_3388 at 4015.408 kb on - strand, within Sama_3388 at 4015.408 kb on - strand, within Sama_3388 at 4015.437 kb on - strand, within Sama_3388 at 4015.468 kb on + strand, within Sama_3388 at 4015.468 kb on + strand, within Sama_3388 at 4015.468 kb on + strand, within Sama_3388 at 4015.468 kb on + strand, within Sama_3388 at 4015.468 kb on + strand, within Sama_3388 at 4015.469 kb on - strand, within Sama_3388 at 4015.488 kb on + strand, within Sama_3388 at 4015.488 kb on + strand, within Sama_3388 at 4015.488 kb on + strand, within Sama_3388 at 4015.489 kb on - strand, within Sama_3388 at 4015.489 kb on - strand, within Sama_3388 at 4015.489 kb on - strand, within Sama_3388 at 4015.615 kb on - strand, within Sama_3388 at 4015.615 kb on - strand, within Sama_3388 at 4015.674 kb on + strand, within Sama_3388 at 4015.675 kb on - strand, within Sama_3388 at 4015.675 kb on - strand, within Sama_3388 at 4015.675 kb on - strand, within Sama_3388 at 4015.758 kb on + strand, within Sama_3388 at 4015.758 kb on + strand, within Sama_3388 at 4015.759 kb on - strand, within Sama_3388 at 4015.794 kb on + strand, within Sama_3388 at 4015.795 kb on - strand, within Sama_3388 at 4015.795 kb on - strand, within Sama_3388 at 4015.795 kb on - strand, within Sama_3388 at 4015.864 kb on + strand, within Sama_3388 at 4015.864 kb on + strand, within Sama_3388 at 4015.864 kb on + strand, within Sama_3388 at 4015.864 kb on + strand, within Sama_3388 at 4015.865 kb on - strand, within Sama_3388 at 4015.865 kb on - strand, within Sama_3388 at 4015.865 kb on - strand, within Sama_3388 at 4015.865 kb on - strand, within Sama_3388 at 4015.908 kb on + strand, within Sama_3388 at 4015.908 kb on + strand, within Sama_3388 at 4015.908 kb on + strand, within Sama_3388 at 4015.908 kb on + strand, within Sama_3388 at 4015.909 kb on - strand, within Sama_3388 at 4015.909 kb on - strand, within Sama_3388 at 4015.909 kb on - strand, within Sama_3388 at 4015.909 kb on - strand, within Sama_3388 at 4015.909 kb on - strand, within Sama_3388
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 4,013,299 - Sama_3385 0.71 -0.7 4,013,299 - Sama_3385 0.71 -0.5 4,013,385 - Sama_3385 0.77 -0.2 4,013,418 + Sama_3385 0.79 +1.3 4,013,418 + Sama_3385 0.79 -0.4 4,013,445 + Sama_3385 0.81 +0.2 4,013,446 - Sama_3385 0.81 -1.2 4,013,565 + Sama_3385 0.88 +0.2 4,013,826 + Sama_3386 0.19 -1.9 4,013,826 + Sama_3386 0.19 +0.3 4,013,826 + Sama_3386 0.19 -0.6 4,013,826 + Sama_3386 0.19 +0.9 4,013,826 + Sama_3386 0.19 -1.1 4,013,827 - Sama_3386 0.20 -0.4 4,013,827 - Sama_3386 0.20 +0.9 4,013,827 - Sama_3386 0.20 +0.4 4,013,827 - Sama_3386 0.20 -0.3 4,013,827 - Sama_3386 0.20 -0.5 4,013,827 - Sama_3386 0.20 -1.8 4,013,835 + Sama_3386 0.22 -1.8 4,013,835 + Sama_3386 0.22 +0.1 4,013,836 - Sama_3386 0.22 -1.6 4,013,836 - Sama_3386 0.22 +0.9 4,013,836 - Sama_3386 0.22 -2.1 4,013,877 + Sama_3386 0.31 -0.5 4,013,877 + Sama_3386 0.31 -1.1 4,013,877 + Sama_3386 0.31 -1.1 4,013,877 + Sama_3386 0.31 +0.1 4,013,877 + Sama_3386 0.31 +0.9 4,013,877 + Sama_3386 0.31 -0.6 4,013,877 + Sama_3386 0.31 +0.3 4,013,878 - Sama_3386 0.31 +1.3 4,013,878 - Sama_3386 0.31 -1.4 4,013,878 - Sama_3386 0.31 +1.2 4,013,878 - Sama_3386 0.31 -0.3 4,013,883 + Sama_3386 0.33 -0.1 4,013,883 + Sama_3386 0.33 -0.2 4,013,884 - Sama_3386 0.33 -0.3 4,013,940 + Sama_3386 0.46 -2.0 4,013,940 + Sama_3386 0.46 +0.5 4,013,940 + Sama_3386 0.46 +0.4 4,013,940 + Sama_3386 0.46 -1.1 4,013,941 - Sama_3386 0.46 +0.4 4,013,941 - Sama_3386 0.46 -0.1 4,013,941 - Sama_3386 0.46 -0.9 4,013,941 - Sama_3386 0.46 +0.2 4,014,022 - Sama_3386 0.65 -0.2 4,014,022 - Sama_3386 0.65 -1.3 4,014,066 + Sama_3386 0.75 +0.6 4,014,066 + Sama_3386 0.75 +0.6 4,014,095 + Sama_3386 0.82 -0.5 4,014,095 + Sama_3386 0.82 -0.7 4,014,095 + Sama_3386 0.82 -1.4 4,014,095 + Sama_3386 0.82 +0.2 4,014,095 + Sama_3386 0.82 +0.4 4,014,096 - Sama_3386 0.82 -1.6 4,014,096 - Sama_3386 0.82 -0.8 4,014,096 - Sama_3386 0.82 +5.9 4,014,096 - Sama_3386 0.82 +2.8 4,014,096 - Sama_3386 0.82 +0.3 4,014,096 - Sama_3386 0.82 -0.1 4,014,127 + Sama_3386 0.89 +0.2 4,014,127 + Sama_3386 0.89 -0.4 4,014,127 + Sama_3386 0.89 -0.8 4,014,128 - Sama_3386 0.89 -1.7 4,014,208 + +1.3 4,014,208 + +0.4 4,014,208 + -0.6 4,014,209 - -0.4 4,014,209 - -1.4 4,014,209 - -1.8 4,014,209 - +0.4 4,014,213 + -0.1 4,014,213 + -0.7 4,014,213 + -0.6 4,014,213 + -1.1 4,014,213 + +1.1 4,014,214 - -2.6 4,014,214 - -2.1 4,014,214 - -1.8 4,014,214 - -0.6 4,014,214 - -1.5 4,014,214 - -0.8 4,014,214 - -2.9 4,014,214 - -2.2 4,014,214 - -2.3 4,014,214 - -0.5 4,014,214 - -0.6 4,014,214 - -1.9 4,014,214 - -1.6 4,014,215 + +0.0 4,014,215 + +0.0 4,014,215 + -0.3 4,014,215 + -0.2 4,014,215 + +1.2 4,014,215 + +0.9 4,014,215 + -0.0 4,014,215 + -1.2 4,014,215 + +0.4 4,014,215 + -0.8 4,014,215 + -0.3 4,014,216 - -2.2 4,014,216 - -1.5 4,014,216 - -1.2 4,014,216 - +0.2 4,014,216 - +0.2 4,014,216 - +0.3 4,014,216 - -1.2 4,014,216 - -1.6 4,014,216 - -1.4 4,014,216 - -1.2 4,014,223 + +0.2 4,014,223 + +0.2 4,014,223 + -0.7 4,014,223 + +0.3 4,014,223 + -1.5 4,014,223 + -1.0 4,014,223 + +0.9 4,014,223 + -1.0 4,014,224 - -0.6 4,014,224 - -0.2 4,014,224 - -1.3 4,014,224 - +0.2 4,014,224 - -1.9 4,014,224 - -1.2 4,014,224 - -0.7 4,014,227 + -2.5 4,014,227 + -0.8 4,014,227 + -1.2 4,014,227 + -0.7 4,014,227 + -0.2 4,014,227 + -1.1 4,014,227 + -0.8 4,014,227 + -1.9 4,014,227 + -1.2 4,014,228 - -1.4 4,014,228 - -2.0 4,014,228 - -1.8 4,014,228 - -1.8 4,014,228 - -0.6 4,014,228 - -1.4 4,014,228 - -2.0 4,014,260 - -0.2 4,014,269 + -2.9 4,014,269 + -0.8 4,014,269 + -1.4 4,014,269 + -1.3 4,014,269 + -1.4 4,014,269 + +0.3 4,014,269 + -1.9 4,014,269 + +0.2 4,014,269 + -2.4 4,014,269 + -0.1 4,014,269 + -0.4 4,014,269 + +1.2 4,014,269 + -2.4 4,014,269 + -0.6 4,014,269 + -1.4 4,014,269 + -1.7 4,014,269 + -2.3 4,014,269 + -1.9 4,014,270 - -0.6 4,014,270 - -1.6 4,014,270 - -0.2 4,014,270 - -1.7 4,014,270 - +0.8 4,014,308 - Sama_3387 0.11 -2.0 4,014,320 + Sama_3387 0.13 -0.4 4,014,320 + Sama_3387 0.13 -0.1 4,014,424 + Sama_3387 0.27 -1.1 4,014,424 + Sama_3387 0.27 -0.7 4,014,511 + Sama_3387 0.39 -1.8 4,014,521 - Sama_3387 0.40 -1.7 4,014,599 + Sama_3387 0.51 -1.8 4,014,599 + Sama_3387 0.51 +0.2 4,014,600 - Sama_3387 0.51 -0.5 4,014,600 - Sama_3387 0.51 +0.8 4,014,604 + Sama_3387 0.51 -0.2 4,014,641 + Sama_3387 0.56 -3.3 4,014,642 - Sama_3387 0.57 -0.8 4,014,728 + Sama_3387 0.68 -1.6 4,014,730 + Sama_3387 0.69 -1.6 4,014,830 + Sama_3387 0.82 -1.1 4,014,830 + Sama_3387 0.82 -3.5 4,014,830 + Sama_3387 0.82 -1.4 4,014,849 - Sama_3387 0.85 -2.6 4,014,849 - Sama_3387 0.85 -2.1 4,014,958 - -0.6 4,014,958 - -2.2 4,014,963 - +1.1 4,014,963 - +0.8 4,014,963 - -0.8 4,014,994 + -1.7 4,014,994 + +0.1 4,015,035 + -2.1 4,015,035 + -2.8 4,015,075 + -0.2 4,015,075 + -1.3 4,015,075 + -1.6 4,015,075 + -2.3 4,015,076 - -0.8 4,015,076 - -0.8 4,015,199 + -2.1 4,015,199 + -2.6 4,015,200 - -2.3 4,015,328 + Sama_3388 0.15 +0.8 4,015,337 + Sama_3388 0.15 -2.1 4,015,407 + Sama_3388 0.18 -2.1 4,015,407 + Sama_3388 0.18 -2.1 4,015,407 + Sama_3388 0.18 -0.8 4,015,407 + Sama_3388 0.18 -3.1 4,015,407 + Sama_3388 0.18 -2.1 4,015,408 - Sama_3388 0.18 -2.1 4,015,408 - Sama_3388 0.18 -1.8 4,015,408 - Sama_3388 0.18 -0.8 4,015,408 - Sama_3388 0.18 -1.2 4,015,408 - Sama_3388 0.18 -1.4 4,015,437 - Sama_3388 0.20 -1.2 4,015,468 + Sama_3388 0.21 -1.1 4,015,468 + Sama_3388 0.21 -0.7 4,015,468 + Sama_3388 0.21 -1.5 4,015,468 + Sama_3388 0.21 -1.1 4,015,468 + Sama_3388 0.21 -2.1 4,015,469 - Sama_3388 0.21 -1.2 4,015,488 + Sama_3388 0.22 -0.8 4,015,488 + Sama_3388 0.22 -1.7 4,015,488 + Sama_3388 0.22 -2.2 4,015,489 - Sama_3388 0.22 -2.9 4,015,489 - Sama_3388 0.22 -2.1 4,015,489 - Sama_3388 0.22 -2.9 4,015,615 - Sama_3388 0.27 -0.7 4,015,615 - Sama_3388 0.27 -1.2 4,015,674 + Sama_3388 0.30 -2.1 4,015,675 - Sama_3388 0.30 +0.2 4,015,675 - Sama_3388 0.30 -1.1 4,015,675 - Sama_3388 0.30 +0.3 4,015,758 + Sama_3388 0.33 -2.6 4,015,758 + Sama_3388 0.33 -0.2 4,015,759 - Sama_3388 0.33 -0.2 4,015,794 + Sama_3388 0.35 -1.8 4,015,795 - Sama_3388 0.35 -0.8 4,015,795 - Sama_3388 0.35 -0.2 4,015,795 - Sama_3388 0.35 -2.4 4,015,864 + Sama_3388 0.37 -1.8 4,015,864 + Sama_3388 0.37 -1.0 4,015,864 + Sama_3388 0.37 +0.8 4,015,864 + Sama_3388 0.37 +0.8 4,015,865 - Sama_3388 0.38 -1.1 4,015,865 - Sama_3388 0.38 -1.2 4,015,865 - Sama_3388 0.38 -1.7 4,015,865 - Sama_3388 0.38 -0.8 4,015,908 + Sama_3388 0.39 +0.3 4,015,908 + Sama_3388 0.39 -0.9 4,015,908 + Sama_3388 0.39 -0.1 4,015,908 + Sama_3388 0.39 -2.0 4,015,909 - Sama_3388 0.39 -0.6 4,015,909 - Sama_3388 0.39 -1.9 4,015,909 - Sama_3388 0.39 -1.4 4,015,909 - Sama_3388 0.39 -0.8 4,015,909 - Sama_3388 0.39 -1.9
Or see this region's nucleotide sequence