Strain Fitness in Shewanella amazonensis SB2B around Sama_3200

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
3,790,282	-		Sama_3198	0.42	-1.4
3,790,312	+		Sama_3198	0.47	+0.5
3,790,312	+		Sama_3198	0.47	-0.1
3,790,313	-		Sama_3198	0.48	-2.0
3,790,313	-		Sama_3198	0.48	+0.4
3,790,344	+		Sama_3198	0.54	-1.5
3,790,364	+		Sama_3198	0.58	-0.3
3,790,364	+		Sama_3198	0.58	-0.6
3,790,364	+		Sama_3198	0.58	-1.3
3,790,365	-		Sama_3198	0.58	-1.5
3,790,365	-		Sama_3198	0.58	+1.2
3,790,365	-		Sama_3198	0.58	+0.0
3,790,454	+		Sama_3198	0.75	-0.3
3,790,455	-		Sama_3198	0.75	-0.2
3,790,460	+		Sama_3198	0.76	-0.3
3,790,460	+		Sama_3198	0.76	-0.9
3,790,460	+		Sama_3198	0.76	+2.0
3,790,460	+		Sama_3198	0.76	+0.9
3,790,460	+		Sama_3198	0.76	+0.1
3,790,460	+		Sama_3198	0.76	-0.3
3,790,461	-		Sama_3198	0.76	-1.1
3,790,461	-		Sama_3198	0.76	-0.7
3,790,461	-		Sama_3198	0.76	-0.4
3,790,544	+				-0.6
3,790,544	+				+0.6
3,790,544	+				+0.7
3,790,544	+				+0.4
3,790,545	-				-0.1
3,790,545	-				-0.4
3,790,545	-				+0.5
3,790,545	-				+0.0
3,790,545	-				-0.3
3,790,599	+				+0.6
3,790,600	-				+0.1
3,790,620	+				+0.7
3,790,621	-				+0.5
3,790,621	-				-0.1
3,790,621	-				+0.4
3,790,664	+				-0.3
3,790,665	-				-0.6
3,790,665	-				-0.2
3,790,665	-				-0.9
3,790,693	+				-0.5
3,790,694	-				-0.0
3,790,694	-				+1.7
3,790,739	+		Sama_3199	0.21	+0.1
3,790,739	+		Sama_3199	0.21	-0.1
3,790,739	+		Sama_3199	0.21	-0.1
3,790,739	+		Sama_3199	0.21	-0.2
3,790,740	-		Sama_3199	0.21	-0.2
3,790,740	-		Sama_3199	0.21	-0.9
3,790,740	-		Sama_3199	0.21	+1.0
3,790,740	-		Sama_3199	0.21	+0.0
3,790,740	-		Sama_3199	0.21	-0.7
3,790,740	-		Sama_3199	0.21	+0.3
3,790,749	+		Sama_3199	0.25	-1.2
3,790,750	-		Sama_3199	0.25	+0.7
3,790,805	+		Sama_3199	0.47	+0.8
3,790,854	+		Sama_3199	0.67	+1.1
3,790,854	+		Sama_3199	0.67	-0.7
3,790,855	-		Sama_3199	0.67	-0.2
3,790,855	-		Sama_3199	0.67	-0.8
3,790,855	-		Sama_3199	0.67	+0.4
3,790,857	+		Sama_3199	0.68	-0.7
3,790,857	+		Sama_3199	0.68	+0.5
3,790,858	-		Sama_3199	0.69	-0.3
3,790,858	-		Sama_3199	0.69	-0.3
3,790,858	-		Sama_3199	0.69	+0.1
3,790,879	-		Sama_3199	0.77	+0.5
3,790,879	-		Sama_3199	0.77	+1.0
3,790,899	+		Sama_3199	0.85	-0.1
3,790,900	-		Sama_3199	0.86	-1.1
3,790,901	+		Sama_3199	0.86	-0.2
3,790,902	-		Sama_3199	0.86	-0.1
3,790,935	+				+0.1
3,790,949	+				+0.6
3,790,949	+				-0.6
3,790,950	-				-0.8
3,790,950	-				-0.9
3,790,951	+				-0.6
3,790,951	+				-0.1
3,790,951	+				-1.4
3,790,951	+				-0.1
3,790,952	-				-1.2
3,790,952	-				-0.6
3,790,952	-				-0.2
3,790,952	-				+0.7
3,790,952	-				-1.1
3,790,952	-				+0.1
3,790,952	-				+2.3
3,790,997	-				-1.0
3,791,009	+				+1.3
3,791,010	-				-0.2
3,791,010	-				-1.8
3,791,037	+				+0.2
3,791,038	-				+0.4
3,791,038	-				+0.7
3,791,038	-				+0.4
3,791,039	+				+0.9
3,791,039	+				-1.3
3,791,039	+				+0.5
3,791,039	+				-0.1
3,791,039	+				-0.6
3,791,039	+				+0.2
3,791,039	+				+1.2
3,791,039	+				+0.4
3,791,040	-				-2.3
3,791,040	-				-0.1
3,791,040	-				+0.2
3,791,040	-				+0.5
3,791,040	-				-0.8
3,791,040	-				-0.3
3,791,040	-				+0.6
3,791,040	-				-0.8
3,791,043	-				+0.1
3,791,043	-				+0.4
3,791,066	-				-0.8
3,791,066	-				-0.6
3,791,066	-				+0.4
3,791,068	+				-0.1
3,791,069	-				-0.1
3,791,069	-				+0.1
3,791,080	-				-2.5
3,791,081	+				+0.7
3,791,081	+				-0.3
3,791,081	+				-0.4
3,791,081	+				-0.4
3,791,081	+				-0.5
3,791,082	-				-0.1
3,791,082	-				+0.2
3,791,082	-				+1.0
3,791,082	-				+0.4
3,791,082	-				-0.4
3,791,082	-				-0.2
3,791,109	+				+0.3
3,791,109	+				-0.2
3,791,110	-				+0.2
3,791,110	-				+0.5
3,791,112	+				+0.7
3,791,112	+				-0.7
3,791,112	+				-1.1
3,791,112	+				+0.5
3,791,112	+				-0.4
3,791,113	-				-1.0
3,791,113	-				-0.4
3,791,118	+				-0.5
3,791,118	+				+0.7
3,791,119	-				+0.3
3,791,119	-				-1.3
3,791,133	+				-0.3
3,791,133	+				-0.5
3,791,134	-				+2.0
3,791,138	+				-0.2
3,791,138	+				+0.0
3,791,138	+				-0.9
3,791,139	-				-0.0
3,791,139	-				-0.5
3,791,208	+				+0.4
3,791,209	-				+1.0
3,791,209	-				-1.3
3,791,209	-				-1.4
3,791,210	+				+0.8
3,791,210	+				-0.1
3,791,210	+				-0.7
3,791,210	+				+0.6
3,791,210	+				-1.0
3,791,210	+				-0.1
3,791,210	+				-0.7
3,791,210	+				-0.3
3,791,210	+				-1.1
3,791,210	+				+0.0
3,791,210	+				+0.7
3,791,210	+				-0.2
3,791,210	+				-2.3
3,791,210	+				-0.7
3,791,210	+				-0.9
3,791,210	+				-0.2
3,791,210	+				-0.8
3,791,210	+				+0.3
3,791,211	-				-0.3
3,791,211	-				-0.1
3,791,211	-				-0.9
3,791,211	-				+0.7
3,791,211	-				-0.7
3,791,211	-				+0.1
3,791,211	-				+0.7
3,791,211	-				-1.1
3,791,211	-				-0.2
3,791,211	-				-0.8
3,791,211	-				-0.0
3,791,211	-				-0.2
3,791,212	+				+0.2
3,791,213	-				+1.7
3,791,213	-				+0.3
3,791,220	+				-1.2
3,791,220	+				-0.4
3,791,220	+				+1.3
3,791,231	+				+0.7
3,791,232	-				-2.0
3,791,241	+				-1.7
3,791,241	+				+1.5
3,791,276	-				+1.2
3,791,282	+				-1.8
3,791,282	+				+0.5
3,791,298	+				-1.0
3,791,299	-				-0.7
3,791,299	-				-1.7
3,791,331	+		Sama_3200	0.11	-1.5
3,791,331	+		Sama_3200	0.11	-0.9
3,791,332	-		Sama_3200	0.12	+0.2
3,791,332	-		Sama_3200	0.12	+0.1
3,791,332	-		Sama_3200	0.12	-2.2
3,791,332	-		Sama_3200	0.12	+2.1
3,791,347	+		Sama_3200	0.15	-0.3
3,791,347	+		Sama_3200	0.15	+0.2
3,791,348	-		Sama_3200	0.15	+1.7
3,791,348	-		Sama_3200	0.15	-0.4
3,791,348	-		Sama_3200	0.15	+0.0
3,791,351	+		Sama_3200	0.15	-0.4
3,791,351	+		Sama_3200	0.15	+0.4
3,791,351	+		Sama_3200	0.15	-0.7
3,791,352	-		Sama_3200	0.16	+0.5
3,791,352	-		Sama_3200	0.16	-0.5
3,791,352	-		Sama_3200	0.16	-1.4
3,791,352	-		Sama_3200	0.16	-1.1
3,791,352	-		Sama_3200	0.16	-0.2
3,791,352	-		Sama_3200	0.16	-1.1
3,791,362	+		Sama_3200	0.18	-0.1
3,791,362	+		Sama_3200	0.18	-0.9
3,791,362	+		Sama_3200	0.18	-0.0
3,791,362	+		Sama_3200	0.18	-0.6
3,791,362	+		Sama_3200	0.18	+0.1
3,791,363	-		Sama_3200	0.18	-0.7
3,791,363	-		Sama_3200	0.18	+0.4
3,791,415	+		Sama_3200	0.29	-0.4
3,791,415	+		Sama_3200	0.29	-0.6
3,791,416	-		Sama_3200	0.29	-0.5
3,791,416	-		Sama_3200	0.29	+0.1
3,791,457	+		Sama_3200	0.37	-3.1
3,791,458	-		Sama_3200	0.37	-1.9
3,791,545	+		Sama_3200	0.55	+1.6
3,791,546	-		Sama_3200	0.56	-1.6
3,791,593	+		Sama_3200	0.65	-2.0
3,791,595	+		Sama_3200	0.66	+0.2
3,791,595	+		Sama_3200	0.66	+0.6
3,791,595	+		Sama_3200	0.66	-0.1
3,791,595	+		Sama_3200	0.66	+1.7
3,791,595	+		Sama_3200	0.66	-0.9
3,791,596	-		Sama_3200	0.66	-1.0
3,791,596	-		Sama_3200	0.66	+1.7
3,791,596	-		Sama_3200	0.66	+0.6
3,791,596	-		Sama_3200	0.66	+1.1
3,791,704	+		Sama_3200	0.88	-0.1
3,791,704	+		Sama_3200	0.88	-1.6
3,791,704	+		Sama_3200	0.88	-0.1
3,791,704	+		Sama_3200	0.88	+0.2
3,791,704	+		Sama_3200	0.88	+0.3
3,791,705	-		Sama_3200	0.88	+0.5
3,791,705	-		Sama_3200	0.88	+0.7
3,791,705	-		Sama_3200	0.88	+0.7
3,791,705	-		Sama_3200	0.88	-0.4
3,791,705	-		Sama_3200	0.88	-0.3
3,791,705	-		Sama_3200	0.88	+0.5
3,791,705	-		Sama_3200	0.88	+0.3
3,791,708	+		Sama_3200	0.89	-0.7
3,791,708	+		Sama_3200	0.89	+0.6
3,791,708	+		Sama_3200	0.89	-1.1
3,791,708	+		Sama_3200	0.89	+0.2
3,791,708	+		Sama_3200	0.89	-1.1
3,791,708	+		Sama_3200	0.89	-0.2
3,791,709	-		Sama_3200	0.89	+0.7
3,791,709	-		Sama_3200	0.89	-0.9
3,791,728	+				-1.2
3,791,728	+				+0.2
3,791,728	+				-0.6
3,791,728	+				-1.4
3,791,729	-				-0.1
3,791,729	-				+0.7
3,791,753	-				+1.0
3,791,754	+				+0.9
3,791,754	+				-1.1
3,791,754	+				-0.6
3,791,754	+				-1.5
3,791,754	+				-0.5
3,791,754	+				+0.9
3,791,755	-				-0.6
3,791,755	-				-0.6
3,791,755	-				+0.5
3,791,755	-				-0.5
3,791,755	-				+0.0
3,791,755	-				+0.5
3,791,759	+				-0.0
3,791,759	+				-0.4
3,791,760	-				-1.2
3,791,760	-				+0.2
3,791,760	-				-0.3
3,791,760	-				+1.4
3,791,760	-				+0.1
3,791,786	+				+0.4
3,791,787	-				-0.5
3,791,892	+				+0.1
3,791,892	+				-0.9
3,791,918	-				-0.3
3,791,918	-				-0.8
3,791,918	-				-0.3
3,791,924	+				-0.7
3,791,924	+				+1.7
3,791,925	-				-0.7
3,792,165	+		Sama_3201	0.23	-1.4
3,792,166	-		Sama_3201	0.23	-1.1
3,792,166	-		Sama_3201	0.23	-0.6
3,792,166	-		Sama_3201	0.23	-1.0
3,792,174	-		Sama_3201	0.24	-0.8
3,792,355	+		Sama_3201	0.41	+0.5
3,792,355	+		Sama_3201	0.41	-0.0
3,792,356	-		Sama_3201	0.42	-1.2
3,792,356	-		Sama_3201	0.42	-0.4
3,792,356	-		Sama_3201	0.42	+0.9
3,792,356	-		Sama_3201	0.42	+0.6
3,792,361	+		Sama_3201	0.42	+0.0
3,792,362	-		Sama_3201	0.42	+0.1
3,792,501	+		Sama_3201	0.55	-0.8
3,792,501	+		Sama_3201	0.55	+1.1
3,792,502	-		Sama_3201	0.56	-0.7
3,792,502	-		Sama_3201	0.56	-1.7
3,792,531	+		Sama_3201	0.58	-1.3
3,792,531	+		Sama_3201	0.58	+2.7
3,792,531	+		Sama_3201	0.58	-0.2
3,792,531	+		Sama_3201	0.58	-1.1
3,792,531	+		Sama_3201	0.58	-1.6
3,792,531	+		Sama_3201	0.58	-0.4
3,792,531	+		Sama_3201	0.58	+0.3
3,792,531	+		Sama_3201	0.58	-0.8
3,792,532	-		Sama_3201	0.58	-0.9
3,792,532	-		Sama_3201	0.58	+0.3
3,792,532	-		Sama_3201	0.58	+0.4
3,792,611	+		Sama_3201	0.66	+0.1
3,792,611	+		Sama_3201	0.66	+0.8
3,792,612	-		Sama_3201	0.66	-0.6
3,792,625	+		Sama_3201	0.67	+1.0
3,792,625	+		Sama_3201	0.67	-0.2
3,792,625	+		Sama_3201	0.67	+0.1
3,792,625	+		Sama_3201	0.67	-0.9
3,792,626	-		Sama_3201	0.68	-1.6
3,792,626	-		Sama_3201	0.68	+1.7
3,792,626	-		Sama_3201	0.68	+1.1
3,792,626	-		Sama_3201	0.68	+0.4
3,792,626	-		Sama_3201	0.68	-0.6
3,792,737	+		Sama_3201	0.78	-0.0
3,792,738	-		Sama_3201	0.78	+0.1
3,792,738	-		Sama_3201	0.78	-0.8