Strain Fitness in Shewanella amazonensis SB2B around Sama_3081

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
3,657,110	-		Sama_3079	0.73	-2.5
3,657,118	+		Sama_3079	0.75	+0.3
3,657,118	+		Sama_3079	0.75	-0.3
3,657,119	-		Sama_3079	0.75	-0.8
3,657,119	-		Sama_3079	0.75	-1.6
3,657,119	-		Sama_3079	0.75	-2.2
3,657,119	-		Sama_3079	0.75	-2.1
3,657,119	-		Sama_3079	0.75	-0.9
3,657,149	+		Sama_3079	0.81	-0.6
3,657,159	-		Sama_3079	0.83	-0.4
3,657,159	-		Sama_3079	0.83	-0.3
3,657,240	-				-0.4
3,657,240	-				+0.1
3,657,240	-				-1.1
3,657,279	-				+0.9
3,657,345	+				-0.8
3,657,345	+				-1.5
3,657,345	+				-0.4
3,657,351	+				-1.6
3,657,351	+				-1.6
3,657,352	-				-0.3
3,657,352	-				-0.6
3,657,360	+		Sama_3080	0.11	-0.8
3,657,361	-		Sama_3080	0.11	-0.6
3,657,361	-		Sama_3080	0.11	-1.6
3,657,361	-		Sama_3080	0.11	-2.1
3,657,361	-		Sama_3080	0.11	-2.0
3,657,361	-		Sama_3080	0.11	-1.1
3,657,361	-		Sama_3080	0.11	+0.7
3,657,361	-		Sama_3080	0.11	-0.3
3,657,361	-		Sama_3080	0.11	-1.0
3,657,365	-		Sama_3080	0.11	-0.3
3,657,401	+		Sama_3080	0.16	-1.6
3,657,444	+		Sama_3080	0.21	-1.6
3,657,445	-		Sama_3080	0.21	-0.9
3,657,445	-		Sama_3080	0.21	-0.8
3,657,457	+		Sama_3080	0.23	+0.1
3,657,457	+		Sama_3080	0.23	-2.9
3,657,458	-		Sama_3080	0.23	-0.9
3,657,458	-		Sama_3080	0.23	-0.1
3,657,458	-		Sama_3080	0.23	+0.7
3,657,461	-		Sama_3080	0.23	+0.1
3,657,461	-		Sama_3080	0.23	-0.6
3,657,461	-		Sama_3080	0.23	+0.4
3,657,461	-		Sama_3080	0.23	+0.1
3,657,461	-		Sama_3080	0.23	-0.6
3,657,533	-		Sama_3080	0.33	-0.1
3,657,544	-		Sama_3080	0.34	-1.5
3,657,594	+		Sama_3080	0.40	-0.2
3,657,595	-		Sama_3080	0.41	-1.9
3,657,600	+		Sama_3080	0.41	-1.3
3,657,600	+		Sama_3080	0.41	-0.9
3,657,600	+		Sama_3080	0.41	-1.3
3,657,628	-		Sama_3080	0.45	-0.3
3,657,831	+		Sama_3080	0.71	-1.6
3,657,831	+		Sama_3080	0.71	-0.1
3,657,832	-		Sama_3080	0.71	-1.1
3,657,832	-		Sama_3080	0.71	-0.9
3,657,850	+		Sama_3080	0.73	-0.8
3,657,851	-		Sama_3080	0.73	-0.9
3,657,862	-		Sama_3080	0.75	-0.6
3,657,882	+		Sama_3080	0.77	-1.2
3,657,882	+		Sama_3080	0.77	-0.3
3,657,883	-		Sama_3080	0.77	+0.7
3,657,911	+		Sama_3080	0.81	-0.9
3,657,912	-		Sama_3080	0.81	-1.2
3,657,912	-		Sama_3080	0.81	-0.3
3,657,912	-		Sama_3080	0.81	-0.3
3,657,912	-		Sama_3080	0.81	-1.5
3,657,912	-		Sama_3080	0.81	+1.7
3,657,922	+		Sama_3080	0.82	-0.9
3,657,923	-		Sama_3080	0.83	-1.8
3,658,016	-				-1.0
3,658,016	-				+0.1
3,658,065	-				-0.9
3,658,075	+				-0.9
3,658,075	+				-0.8
3,658,075	+				-2.4
3,658,076	-				-1.6
3,658,076	-				+0.4
3,658,076	-				+0.1
3,658,076	-				+0.9
3,658,076	-				+0.4
3,658,076	-				-0.4
3,658,076	-				+0.3
3,658,076	-				-0.6
3,658,076	-				-0.2
3,658,077	+				-1.2
3,658,077	+				-1.2
3,658,078	-				-0.0
3,658,078	-				+0.0
3,658,078	-				-0.4
3,658,078	-				+0.5
3,658,093	-				+0.1
3,658,162	+		Sama_3081	0.14	-1.5
3,658,162	+		Sama_3081	0.14	-1.3
3,658,162	+		Sama_3081	0.14	-0.9
3,658,163	-		Sama_3081	0.14	-1.1
3,658,163	-		Sama_3081	0.14	-0.5
3,658,163	-		Sama_3081	0.14	+0.1
3,658,163	-		Sama_3081	0.14	-0.8
3,658,163	-		Sama_3081	0.14	-2.0
3,658,163	-		Sama_3081	0.14	+1.3
3,658,163	-		Sama_3081	0.14	-0.4
3,658,163	-		Sama_3081	0.14	-2.8
3,658,163	-		Sama_3081	0.14	-1.1
3,658,163	-		Sama_3081	0.14	-2.7
3,658,163	-		Sama_3081	0.14	-1.1
3,658,163	-		Sama_3081	0.14	-0.3
3,658,212	+		Sama_3081	0.20	-1.3
3,658,213	-		Sama_3081	0.21	+0.4
3,658,213	-		Sama_3081	0.21	-0.3
3,658,213	-		Sama_3081	0.21	+1.1
3,658,218	+		Sama_3081	0.21	-1.3
3,658,218	+		Sama_3081	0.21	-0.0
3,658,218	+		Sama_3081	0.21	-0.9
3,658,218	+		Sama_3081	0.21	-1.6
3,658,218	+		Sama_3081	0.21	-2.0
3,658,219	-		Sama_3081	0.21	-1.5
3,658,219	-		Sama_3081	0.21	+0.7
3,658,219	-		Sama_3081	0.21	-1.8
3,658,219	-		Sama_3081	0.21	-1.1
3,658,219	-		Sama_3081	0.21	-0.3
3,658,219	-		Sama_3081	0.21	-1.3
3,658,219	-		Sama_3081	0.21	-2.2
3,658,219	-		Sama_3081	0.21	+0.4
3,658,228	+		Sama_3081	0.22	-1.8
3,658,229	-		Sama_3081	0.23	-1.6
3,658,300	+		Sama_3081	0.31	+0.7
3,658,301	-		Sama_3081	0.31	-1.0
3,658,356	+		Sama_3081	0.38	-0.9
3,658,356	+		Sama_3081	0.38	-3.0
3,658,356	+		Sama_3081	0.38	-1.1
3,658,356	+		Sama_3081	0.38	-0.9
3,658,356	+		Sama_3081	0.38	-1.3
3,658,356	+		Sama_3081	0.38	-1.6
3,658,357	-		Sama_3081	0.38	-0.8
3,658,357	-		Sama_3081	0.38	-2.3
3,658,357	-		Sama_3081	0.38	-0.9
3,658,357	-		Sama_3081	0.38	-1.6
3,658,357	-		Sama_3081	0.38	-0.9
3,658,357	-		Sama_3081	0.38	-0.9
3,658,357	-		Sama_3081	0.38	-2.2
3,658,357	-		Sama_3081	0.38	-0.3
3,658,498	+		Sama_3081	0.56	-0.6
3,658,499	-		Sama_3081	0.56	-1.3
3,658,499	-		Sama_3081	0.56	-2.4
3,658,543	+		Sama_3081	0.61	-0.8
3,658,543	+		Sama_3081	0.61	-2.0
3,658,601	-		Sama_3081	0.68	-1.6
3,658,601	-		Sama_3081	0.68	-0.9
3,658,601	-		Sama_3081	0.68	-1.1
3,658,601	-		Sama_3081	0.68	-1.1
3,658,601	-		Sama_3081	0.68	-0.9
3,658,601	-		Sama_3081	0.68	-2.2
3,658,601	-		Sama_3081	0.68	+0.1
3,658,606	+		Sama_3081	0.69	-1.1
3,658,607	-		Sama_3081	0.69	-0.9
3,658,607	-		Sama_3081	0.69	-0.3
3,658,645	+		Sama_3081	0.74	-0.6
3,658,646	-		Sama_3081	0.74	+0.1
3,658,646	-		Sama_3081	0.74	-0.9
3,658,780	+				-2.1
3,658,781	-				-1.5
3,658,781	-				-1.1
3,658,781	-				-1.6
3,658,788	+				-1.3
3,658,788	+				-0.3
3,658,788	+				+0.1
3,658,788	+				-1.5
3,658,788	+				+0.1
3,658,788	+				+0.4
3,658,788	+				-0.9
3,658,788	+				-0.1
3,658,789	-				-1.0
3,658,789	-				-0.9
3,658,789	-				-0.8
3,658,789	-				-0.9
3,658,789	-				-1.8
3,658,789	-				-2.0
3,658,822	+				-1.3
3,658,822	+				-0.6
3,658,838	+				-0.7
3,658,838	+				-0.2
3,658,839	-				+0.1
3,658,839	-				-0.8
3,658,958	+				+1.0
3,658,958	+				+0.5
3,658,958	+				-0.0
3,658,958	+				+0.7
3,658,959	-				+0.1
3,658,966	+				-0.6
3,658,966	+				-0.0
3,658,966	+				+1.0
3,658,966	+				-0.7
3,658,966	+				-0.1
3,658,966	+				+0.7
3,658,966	+				+0.1
3,658,966	+				+0.3
3,658,966	+				+0.4
3,658,966	+				+0.4
3,658,966	+				+0.1
3,658,966	+				-0.1
3,658,966	+				-0.1
3,658,966	+				+0.3
3,658,966	+				+1.0
3,658,967	-				-0.3
3,658,967	-				+1.0
3,658,978	+				-0.9
3,658,978	+				-0.2
3,658,984	+				-0.1
3,658,984	+				+0.7
3,659,019	+				+0.4
3,659,019	+				+0.1
3,659,312	+		Sama_3082	0.28	-0.3
3,659,389	+		Sama_3082	0.36	-2.1
3,659,436	+		Sama_3082	0.41	+1.1
3,659,436	+		Sama_3082	0.41	+1.3
3,659,464	+		Sama_3082	0.44	+0.2
3,659,464	+		Sama_3082	0.44	+0.5
3,659,464	+		Sama_3082	0.44	-0.1
3,659,464	+		Sama_3082	0.44	+0.3
3,659,464	+		Sama_3082	0.44	+0.1
3,659,547	+		Sama_3082	0.53	-0.1
3,659,547	+		Sama_3082	0.53	+0.6
3,659,585	+		Sama_3082	0.56	-0.2
3,659,641	+		Sama_3082	0.62	+1.3
3,659,641	+		Sama_3082	0.62	+0.6
3,659,641	+		Sama_3082	0.62	+0.9
3,659,641	+		Sama_3082	0.62	+1.1
3,659,641	+		Sama_3082	0.62	-0.3
3,659,641	+		Sama_3082	0.62	+0.6
3,659,641	+		Sama_3082	0.62	+1.0
3,659,664	+		Sama_3082	0.65	+0.6
3,659,679	+		Sama_3082	0.66	+0.7
3,659,679	+		Sama_3082	0.66	+0.8
3,659,756	+		Sama_3082	0.74	+0.8
3,659,763	+		Sama_3082	0.75	+0.1
3,659,784	+		Sama_3082	0.77	+1.0
3,659,784	+		Sama_3082	0.77	+1.7
3,659,784	+		Sama_3082	0.77	+1.3
3,659,784	+		Sama_3082	0.77	+0.4
3,659,784	+		Sama_3082	0.77	+1.0