Strain Fitness in Shewanella amazonensis SB2B around Sama_2880

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
3,419,508	+		Sama_2879	0.16	+0.4
3,419,508	+		Sama_2879	0.16	-2.1
3,419,509	-		Sama_2879	0.16	-1.4
3,419,574	+		Sama_2879	0.23	-0.9
3,419,574	+		Sama_2879	0.23	-0.1
3,419,575	-		Sama_2879	0.23	-0.9
3,419,575	-		Sama_2879	0.23	+0.6
3,419,584	+		Sama_2879	0.24	+7.5
3,419,608	+		Sama_2879	0.27	-0.3
3,419,608	+		Sama_2879	0.27	+1.0
3,419,608	+		Sama_2879	0.27	-0.1
3,419,608	+		Sama_2879	0.27	-0.0
3,419,609	-		Sama_2879	0.27	+0.4
3,419,622	+		Sama_2879	0.28	+0.4
3,419,623	-		Sama_2879	0.28	-0.6
3,419,640	+		Sama_2879	0.30	-0.2
3,419,640	+		Sama_2879	0.30	-2.0
3,419,641	-		Sama_2879	0.30	-1.5
3,419,641	-		Sama_2879	0.30	-0.7
3,419,719	-		Sama_2879	0.38	-0.5
3,419,719	-		Sama_2879	0.38	-0.3
3,419,719	-		Sama_2879	0.38	-0.9
3,419,719	-		Sama_2879	0.38	+0.9
3,419,721	+		Sama_2879	0.38	+0.5
3,419,769	+		Sama_2879	0.43	+1.7
3,419,784	+		Sama_2879	0.44	-0.0
3,419,784	+		Sama_2879	0.44	+0.3
3,419,784	+		Sama_2879	0.44	-0.3
3,419,784	+		Sama_2879	0.44	-1.4
3,419,785	-		Sama_2879	0.45	-0.1
3,419,785	-		Sama_2879	0.45	-1.2
3,419,796	+		Sama_2879	0.46	-0.4
3,419,796	+		Sama_2879	0.46	+1.1
3,419,797	-		Sama_2879	0.46	-0.6
3,419,797	-		Sama_2879	0.46	-0.3
3,419,797	-		Sama_2879	0.46	+0.2
3,419,797	-		Sama_2879	0.46	+1.2
3,419,797	-		Sama_2879	0.46	+1.3
3,419,797	-		Sama_2879	0.46	+0.3
3,419,845	+		Sama_2879	0.51	+2.7
3,419,867	+		Sama_2879	0.53	-0.2
3,419,867	+		Sama_2879	0.53	-0.6
3,419,867	+		Sama_2879	0.53	+1.5
3,419,867	+		Sama_2879	0.53	+0.1
3,419,868	-		Sama_2879	0.53	+0.7
3,419,868	-		Sama_2879	0.53	-0.4
3,419,868	-		Sama_2879	0.53	+0.7
3,419,869	+		Sama_2879	0.53	+0.6
3,419,870	-		Sama_2879	0.53	-1.4
3,419,928	+		Sama_2879	0.59	+0.7
3,419,929	-		Sama_2879	0.59	-0.6
3,419,963	+		Sama_2879	0.63	-2.2
3,419,964	-		Sama_2879	0.63	+0.1
3,419,971	+		Sama_2879	0.63	-1.1
3,419,972	-		Sama_2879	0.64	-0.5
3,420,020	-		Sama_2879	0.68	-0.6
3,420,020	-		Sama_2879	0.68	-0.3
3,420,020	-		Sama_2879	0.68	+0.7
3,420,063	+		Sama_2879	0.73	-0.3
3,420,064	-		Sama_2879	0.73	+1.1
3,420,107	-		Sama_2879	0.77	-0.6
3,420,119	+		Sama_2879	0.78	-2.3
3,420,119	+		Sama_2879	0.78	+1.0
3,420,119	+		Sama_2879	0.78	+0.2
3,420,119	+		Sama_2879	0.78	+0.2
3,420,119	+		Sama_2879	0.78	-0.5
3,420,119	+		Sama_2879	0.78	-0.6
3,420,119	+		Sama_2879	0.78	-0.5
3,420,119	+		Sama_2879	0.78	-0.3
3,420,119	+		Sama_2879	0.78	+1.1
3,420,119	+		Sama_2879	0.78	-0.5
3,420,119	+		Sama_2879	0.78	-1.6
3,420,120	-		Sama_2879	0.79	+0.0
3,420,120	-		Sama_2879	0.79	+1.1
3,420,120	-		Sama_2879	0.79	-0.3
3,420,120	-		Sama_2879	0.79	-1.3
3,420,120	-		Sama_2879	0.79	+0.1
3,420,120	-		Sama_2879	0.79	-0.3
3,420,120	-		Sama_2879	0.79	-0.6
3,420,120	-		Sama_2879	0.79	+1.3
3,420,120	-		Sama_2879	0.79	+1.1
3,420,120	-		Sama_2879	0.79	-0.8
3,420,120	-		Sama_2879	0.79	-0.1
3,420,120	-		Sama_2879	0.79	-0.6
3,420,120	-		Sama_2879	0.79	+0.2
3,420,120	-		Sama_2879	0.79	-1.6
3,420,147	+		Sama_2879	0.81	+0.2
3,420,148	-		Sama_2879	0.81	+0.4
3,420,164	+		Sama_2879	0.83	-0.6
3,420,179	+		Sama_2879	0.85	+0.6
3,420,180	-		Sama_2879	0.85	+0.5
3,420,180	-		Sama_2879	0.85	-1.3
3,420,180	-		Sama_2879	0.85	+0.4
3,420,180	-		Sama_2879	0.85	-1.4
3,420,181	+		Sama_2879	0.85	+0.7
3,420,181	+		Sama_2879	0.85	+0.1
3,420,181	+		Sama_2879	0.85	+0.5
3,420,181	+		Sama_2879	0.85	-1.5
3,420,182	-		Sama_2879	0.85	+0.7
3,420,182	-		Sama_2879	0.85	-0.3
3,420,185	-		Sama_2879	0.85	+0.6
3,420,185	-		Sama_2879	0.85	-0.6
3,420,225	+		Sama_2879	0.89	-0.5
3,420,225	+		Sama_2879	0.89	-0.5
3,420,226	-		Sama_2879	0.89	+0.7
3,420,226	-		Sama_2879	0.89	+0.1
3,420,233	+				+0.6
3,420,234	-				-1.2
3,420,234	-				-0.1
3,420,234	-				-0.8
3,420,338	+				-0.9
3,420,338	+				-0.9
3,420,338	+				+1.3
3,420,338	+				+0.3
3,420,338	+				+0.9
3,420,338	+				+0.8
3,420,338	+				-0.1
3,420,338	+				-0.2
3,420,338	+				-1.5
3,420,339	-				+1.4
3,420,339	-				-1.3
3,420,346	-				+0.0
3,420,353	-				-1.1
3,420,360	-				+0.8
3,420,360	-				-0.0
3,420,381	-				-0.6
3,420,394	+				+0.7
3,420,401	+				-1.6
3,420,408	+				+0.5
3,420,415	+				+0.5
3,420,422	+				-0.5
3,420,422	+				-1.0
3,420,432	+				-2.2
3,420,432	+				-0.4
3,420,494	+				+0.0
3,420,495	-				-0.2
3,420,520	+				+0.6
3,420,520	+				+1.1
3,420,521	-				+0.5
3,420,608	-				-0.5
3,420,608	-				-1.1
3,420,608	-				-0.8
3,420,623	+				+0.5
3,420,623	+				-0.7
3,420,623	+				-0.3
3,420,624	-				+0.9
3,420,624	-				-0.1
3,420,630	+				-0.6
3,420,630	+				-0.2
3,420,631	-				-2.6
3,420,631	-				+1.1
3,420,693	+		Sama_2880	0.11	-0.7
3,420,693	+		Sama_2880	0.11	-0.1
3,420,693	+		Sama_2880	0.11	-0.3
3,420,693	+		Sama_2880	0.11	+0.2
3,420,693	+		Sama_2880	0.11	+1.0
3,420,694	-		Sama_2880	0.11	+0.7
3,420,694	-		Sama_2880	0.11	-0.2
3,420,694	-		Sama_2880	0.11	+0.8
3,420,858	+		Sama_2880	0.21	-1.3
3,420,859	-		Sama_2880	0.21	+1.0
3,420,859	-		Sama_2880	0.21	-1.2
3,420,859	-		Sama_2880	0.21	-0.8
3,420,886	-		Sama_2880	0.23	+0.2
3,421,014	+		Sama_2880	0.31	-1.5
3,421,104	+		Sama_2880	0.36	+1.0
3,421,104	+		Sama_2880	0.36	-0.1
3,421,105	-		Sama_2880	0.36	-0.5
3,421,105	-		Sama_2880	0.36	-0.6
3,421,173	+		Sama_2880	0.40	-1.0
3,421,173	+		Sama_2880	0.40	-0.4
3,421,173	+		Sama_2880	0.40	+1.1
3,421,222	-		Sama_2880	0.43	-1.2
3,421,255	-		Sama_2880	0.45	+0.5
3,421,309	+		Sama_2880	0.48	-1.4
3,421,324	-		Sama_2880	0.49	-1.5
3,421,342	-		Sama_2880	0.50	-0.8
3,421,344	+		Sama_2880	0.50	-0.3
3,421,429	-		Sama_2880	0.55	-0.2
3,421,530	+		Sama_2880	0.61	+0.7
3,421,531	-		Sama_2880	0.61	-0.8
3,421,604	+		Sama_2880	0.66	-0.2
3,421,604	+		Sama_2880	0.66	-1.6
3,421,624	+		Sama_2880	0.67	+0.5
3,421,624	+		Sama_2880	0.67	+1.1
3,421,624	+		Sama_2880	0.67	+1.5
3,421,624	+		Sama_2880	0.67	+0.8
3,421,625	-		Sama_2880	0.67	-0.5
3,421,625	-		Sama_2880	0.67	-1.9
3,421,625	-		Sama_2880	0.67	-0.9
3,421,625	-		Sama_2880	0.67	-0.4
3,421,625	-		Sama_2880	0.67	+0.8
3,421,625	-		Sama_2880	0.67	-1.2
3,421,626	+		Sama_2880	0.67	-0.2
3,421,626	+		Sama_2880	0.67	+0.5
3,421,626	+		Sama_2880	0.67	+0.3
3,421,627	-		Sama_2880	0.67	-0.2
3,421,627	-		Sama_2880	0.67	+1.4
3,421,627	-		Sama_2880	0.67	-1.6
3,421,627	-		Sama_2880	0.67	-0.1
3,421,637	+		Sama_2880	0.68	-0.9
3,421,655	-		Sama_2880	0.69	+1.4
3,421,655	-		Sama_2880	0.69	-0.5
3,421,728	-		Sama_2880	0.73	+0.6
3,421,733	+		Sama_2880	0.73	-2.1
3,421,733	+		Sama_2880	0.73	-0.5
3,421,733	+		Sama_2880	0.73	+1.4
3,421,733	+		Sama_2880	0.73	+0.2
3,421,733	+		Sama_2880	0.73	+0.2
3,421,734	-		Sama_2880	0.73	-1.3
3,421,734	-		Sama_2880	0.73	+1.4
3,421,734	-		Sama_2880	0.73	-0.1
3,421,734	-		Sama_2880	0.73	+0.4
3,421,734	-		Sama_2880	0.73	-0.8
3,421,734	-		Sama_2880	0.73	-1.4
3,421,734	-		Sama_2880	0.73	-0.8
3,421,734	-		Sama_2880	0.73	-0.1
3,421,770	+		Sama_2880	0.76	-0.9
3,421,770	+		Sama_2880	0.76	+0.7
3,421,770	+		Sama_2880	0.76	+0.1
3,421,770	+		Sama_2880	0.76	+0.1
3,421,770	+		Sama_2880	0.76	-0.8
3,421,770	+		Sama_2880	0.76	-0.1
3,421,771	-		Sama_2880	0.76	+0.4
3,421,771	-		Sama_2880	0.76	+0.6
3,421,771	-		Sama_2880	0.76	-0.2
3,421,824	+		Sama_2880	0.79	+1.4
3,421,825	-		Sama_2880	0.79	-0.1
3,421,825	-		Sama_2880	0.79	-0.3
3,421,825	-		Sama_2880	0.79	-0.5
3,421,871	+		Sama_2880	0.82	+0.5
3,421,871	+		Sama_2880	0.82	-0.0
3,421,871	+		Sama_2880	0.82	+0.8
3,421,871	+		Sama_2880	0.82	+0.7
3,421,872	-		Sama_2880	0.82	-0.5
3,421,872	-		Sama_2880	0.82	-1.0
3,421,872	-		Sama_2880	0.82	+1.2
3,421,875	+		Sama_2880	0.82	+0.1
3,421,877	+		Sama_2880	0.82	-0.5
3,421,877	+		Sama_2880	0.82	-0.5
3,421,877	+		Sama_2880	0.82	-1.0
3,421,877	+		Sama_2880	0.82	-0.8
3,421,877	+		Sama_2880	0.82	+0.4
3,421,877	+		Sama_2880	0.82	-0.1
3,421,877	+		Sama_2880	0.82	-0.4
3,421,878	-		Sama_2880	0.82	-0.1
3,421,878	-		Sama_2880	0.82	-0.5
3,421,878	-		Sama_2880	0.82	+0.1
3,421,878	-		Sama_2880	0.82	-0.4
3,421,878	-		Sama_2880	0.82	-0.9
3,421,878	-		Sama_2880	0.82	-0.0
3,421,878	-		Sama_2880	0.82	+1.7
3,421,881	+		Sama_2880	0.82	-0.5
3,421,882	-		Sama_2880	0.82	+1.3
3,421,882	-		Sama_2880	0.82	-0.3
3,421,954	+		Sama_2880	0.87	-0.2
3,421,954	+		Sama_2880	0.87	-1.2
3,421,954	+		Sama_2880	0.87	-0.1
3,421,954	+		Sama_2880	0.87	+1.3
3,421,955	-		Sama_2880	0.87	+1.3
3,421,955	-		Sama_2880	0.87	+0.1
3,422,034	+				-0.8
3,422,035	-				+0.4
3,422,084	+				-1.1
3,422,085	-				+0.0
3,422,085	-				+2.0
3,422,085	-				-1.9
3,422,085	-				+1.2
3,422,100	+				-0.8
3,422,101	-				-0.4
3,422,101	-				-0.6
3,422,156	+				+0.0
3,422,157	-				-0.1
3,422,157	-				+0.2
3,422,157	-				+1.1
3,422,160	+				-0.1
3,422,160	+				-0.1
3,422,160	+				-1.0
3,422,161	-				-1.2
3,422,161	-				-0.2
3,422,161	-				-0.3
3,422,170	+				+0.9
3,422,178	+				-0.5
3,422,178	+				+0.2
3,422,178	+				-0.3
3,422,178	+				+0.4
3,422,178	+				-0.2
3,422,178	+				-1.4
3,422,178	+				-1.2
3,422,178	+				-0.3
3,422,178	+				-1.1
3,422,178	+				-0.4
3,422,178	+				-0.4
3,422,178	+				+0.2
3,422,178	+				+1.5
3,422,178	+				+2.4
3,422,178	+				+0.4
3,422,178	+				+0.3
3,422,178	+				-0.2
3,422,178	+				-0.0
3,422,178	+				+0.1
3,422,178	+				-0.1
3,422,178	+				-0.1
3,422,178	+				+0.3
3,422,178	+				+0.4
3,422,178	+				+0.3
3,422,179	-				+0.1
3,422,179	-				+1.1
3,422,179	-				+0.5
3,422,179	-				+1.1
3,422,179	-				+1.1
3,422,179	-				-0.3
3,422,179	-				+1.2
3,422,179	-				+0.1
3,422,179	-				+0.0
3,422,179	-				+0.2
3,422,179	-				-0.5
3,422,179	-				+0.1
3,422,179	-				-1.5
3,422,179	-				-1.6
3,422,179	-				+0.9
3,422,179	-				-0.1
3,422,179	-				-0.3
3,422,179	-				-0.8
3,422,215	+				-1.0
3,422,215	+				-1.0
3,422,215	+				-1.1
3,422,215	+				-0.3
3,422,215	+				+0.5
3,422,215	+				-1.5
3,422,215	+				+0.7
3,422,216	-				-1.4
3,422,216	-				+0.0
3,422,216	-				-0.2
3,422,216	-				+0.9
3,422,217	+				-0.3
3,422,217	+				+2.1
3,422,217	+				+0.4
3,422,217	+				-0.4
3,422,217	+				-0.5
3,422,218	-				-1.1
3,422,218	-				+0.7
3,422,229	-				-0.1
3,422,229	-				+0.9
3,422,230	+				-1.1
3,422,231	-				+0.4
3,422,231	-				-0.5
3,422,231	-				-0.1
3,422,236	+				-0.6
3,422,236	+				+0.3
3,422,236	+				+0.5
3,422,237	-				-1.9
3,422,237	-				-0.4
3,422,237	-				-0.6
3,422,237	-				+0.6
3,422,239	+				-0.9
3,422,239	+				+0.4
3,422,240	-				-0.8
3,422,240	-				-0.8
3,422,267	+				+0.9
3,422,268	-				-2.4
3,422,268	-				-0.6
3,422,268	-				+1.1
3,422,268	-				+2.7
3,422,311	+				-1.2
3,422,312	-				+1.1
3,422,415	+		Sama_2881	0.20	-0.4
3,422,443	+		Sama_2881	0.25	-1.5
3,422,443	+		Sama_2881	0.25	+0.5
3,422,443	+		Sama_2881	0.25	-0.8
3,422,443	+		Sama_2881	0.25	-1.6
3,422,443	+		Sama_2881	0.25	+2.3
3,422,443	+		Sama_2881	0.25	-0.8
3,422,443	+		Sama_2881	0.25	+0.2
3,422,443	+		Sama_2881	0.25	+0.1
3,422,443	+		Sama_2881	0.25	-2.0
3,422,443	+		Sama_2881	0.25	-1.6
3,422,443	+		Sama_2881	0.25	-1.6
3,422,444	-		Sama_2881	0.25	-1.2
3,422,444	-		Sama_2881	0.25	-0.3
3,422,444	-		Sama_2881	0.25	+1.1
3,422,444	-		Sama_2881	0.25	+0.3
3,422,444	-		Sama_2881	0.25	-2.2
3,422,444	-		Sama_2881	0.25	-0.5
3,422,444	-		Sama_2881	0.25	-0.6
3,422,444	-		Sama_2881	0.25	+0.1
3,422,444	-		Sama_2881	0.25	-0.8
3,422,444	-		Sama_2881	0.25	-0.6
3,422,444	-		Sama_2881	0.25	-0.0
3,422,444	-		Sama_2881	0.25	-0.6
3,422,444	-		Sama_2881	0.25	-0.9
3,422,444	-		Sama_2881	0.25	-1.5
3,422,444	-		Sama_2881	0.25	+0.5
3,422,444	-		Sama_2881	0.25	-1.5
3,422,479	-		Sama_2881	0.31	-1.2
3,422,479	-		Sama_2881	0.31	+0.1
3,422,479	-		Sama_2881	0.31	+0.4
3,422,479	-		Sama_2881	0.31	+0.6
3,422,479	-		Sama_2881	0.31	+0.0
3,422,674	+		Sama_2881	0.68	-0.5
3,422,675	-		Sama_2881	0.68	+0.2
3,422,675	-		Sama_2881	0.68	-2.1
3,422,675	-		Sama_2881	0.68	-2.4
3,422,675	-		Sama_2881	0.68	-0.7
3,422,675	-		Sama_2881	0.68	-1.1
3,422,757	+		Sama_2881	0.83	-0.1
3,422,757	+		Sama_2881	0.83	+0.2
3,422,757	+		Sama_2881	0.83	-1.2
3,422,757	+		Sama_2881	0.83	-1.0
3,422,757	+		Sama_2881	0.83	+0.2
3,422,757	+		Sama_2881	0.83	+0.9
3,422,757	+		Sama_2881	0.83	-1.1
3,422,758	-		Sama_2881	0.83	+0.0
3,422,758	-		Sama_2881	0.83	-0.9
3,422,758	-		Sama_2881	0.83	+0.4
3,422,758	-		Sama_2881	0.83	-0.3
3,422,758	-		Sama_2881	0.83	-0.3
3,422,758	-		Sama_2881	0.83	-0.3
3,422,761	-		Sama_2881	0.84	-0.0
3,422,761	-		Sama_2881	0.84	+0.3
3,422,825	+				-0.5
3,422,826	-				-0.2
3,422,826	-				+0.1
3,422,870	+				+1.3
3,422,870	+				+0.1
3,422,870	+				-0.7
3,422,870	+				-0.4
3,422,870	+				+0.0
3,422,871	-				-0.6
3,422,871	-				-0.4
3,422,871	-				-1.1
3,422,959	+		Sama_2882	0.22	+0.3
3,422,960	-		Sama_2882	0.22	+1.1
3,422,960	-		Sama_2882	0.22	+0.4
3,422,960	-		Sama_2882	0.22	+0.9
3,422,971	+		Sama_2882	0.24	-0.2
3,422,971	+		Sama_2882	0.24	-1.8
3,422,977	+		Sama_2882	0.25	-0.8
3,422,992	-		Sama_2882	0.28	+0.4
3,422,992	-		Sama_2882	0.28	+0.9
3,422,992	-		Sama_2882	0.28	+0.4
3,423,001	-		Sama_2882	0.29	+0.3
3,423,021	-		Sama_2882	0.33	-0.1
3,423,052	+		Sama_2882	0.39	-0.3
3,423,052	+		Sama_2882	0.39	+0.1
3,423,052	+		Sama_2882	0.39	+0.1
3,423,053	-		Sama_2882	0.39	-0.9
3,423,053	-		Sama_2882	0.39	-0.5
3,423,053	-		Sama_2882	0.39	+0.4
3,423,053	-		Sama_2882	0.39	+2.7
3,423,070	+		Sama_2882	0.42	+0.3
3,423,070	+		Sama_2882	0.42	+0.5
3,423,070	+		Sama_2882	0.42	+0.7
3,423,070	+		Sama_2882	0.42	+0.2
3,423,071	-		Sama_2882	0.42	+0.6
3,423,071	-		Sama_2882	0.42	-0.7
3,423,071	-		Sama_2882	0.42	-0.1
3,423,072	+		Sama_2882	0.43	+1.3
3,423,072	+		Sama_2882	0.43	+1.4
3,423,072	+		Sama_2882	0.43	+0.2
3,423,072	+		Sama_2882	0.43	+1.0
3,423,072	+		Sama_2882	0.43	-0.4
3,423,072	+		Sama_2882	0.43	+1.3
3,423,072	+		Sama_2882	0.43	+1.7
3,423,073	-		Sama_2882	0.43	-0.4
3,423,073	-		Sama_2882	0.43	-0.1
3,423,073	-		Sama_2882	0.43	-2.0
3,423,073	-		Sama_2882	0.43	-0.7
3,423,073	-		Sama_2882	0.43	+0.0
3,423,073	-		Sama_2882	0.43	-0.3
3,423,091	+		Sama_2882	0.46	-0.7
3,423,176	-		Sama_2882	0.62	-2.0