Experiment: Sisomicin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2667 and Sama_2668 are separated by 11 nucleotides Sama_2668 and Sama_2669 are separated by 99 nucleotides Sama_2669 and Sama_2670 overlap by 4 nucleotides Sama_2670 and Sama_2671 are separated by 33 nucleotides
Sama_2667: Sama_2667 - hypothetical protein (RefSeq), at 3,194,014 to 3,194,427
_2667
Sama_2668: Sama_2668 - PspA/IM30 (RefSeq), at 3,194,439 to 3,195,128
_2668
Sama_2669: Sama_2669 - hypothetical protein (RefSeq), at 3,195,228 to 3,195,875
_2669
Sama_2670: Sama_2670 - hypothetical protein (RefSeq), at 3,195,872 to 3,196,201
_2670
Sama_2671: Sama_2671 - ion transporter (RefSeq), at 3,196,235 to 3,197,077
_2671
Position (kb)
3195
3196 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.308 kb on + strand, within Sama_2667 at 3194.309 kb on - strand, within Sama_2667 at 3194.317 kb on + strand, within Sama_2667 at 3194.317 kb on + strand, within Sama_2667 at 3194.317 kb on + strand, within Sama_2667 at 3194.318 kb on - strand, within Sama_2667 at 3194.318 kb on - strand, within Sama_2667 at 3194.318 kb on - strand, within Sama_2667 at 3194.318 kb on - strand, within Sama_2667 at 3194.318 kb on - strand, within Sama_2667 at 3194.398 kb on - strand at 3194.398 kb on - strand at 3194.416 kb on + strand at 3194.417 kb on - strand at 3194.425 kb on + strand at 3194.425 kb on + strand at 3194.425 kb on + strand at 3194.491 kb on + strand at 3194.594 kb on + strand, within Sama_2668 at 3195.138 kb on + strand at 3195.200 kb on - strand at 3195.240 kb on - strand at 3195.311 kb on + strand, within Sama_2669 at 3195.312 kb on - strand, within Sama_2669 at 3195.314 kb on + strand, within Sama_2669 at 3195.314 kb on + strand, within Sama_2669 at 3195.314 kb on + strand, within Sama_2669 at 3195.390 kb on + strand, within Sama_2669 at 3195.390 kb on + strand, within Sama_2669 at 3195.390 kb on + strand, within Sama_2669 at 3195.391 kb on - strand, within Sama_2669 at 3195.428 kb on + strand, within Sama_2669 at 3195.428 kb on + strand, within Sama_2669 at 3195.429 kb on - strand, within Sama_2669 at 3195.429 kb on - strand, within Sama_2669 at 3195.446 kb on + strand, within Sama_2669 at 3195.453 kb on + strand, within Sama_2669 at 3195.453 kb on + strand, within Sama_2669 at 3195.453 kb on + strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.454 kb on - strand, within Sama_2669 at 3195.456 kb on - strand, within Sama_2669 at 3195.597 kb on - strand, within Sama_2669 at 3195.636 kb on + strand, within Sama_2669 at 3195.637 kb on - strand, within Sama_2669 at 3195.637 kb on - strand, within Sama_2669 at 3195.790 kb on - strand, within Sama_2669 at 3195.790 kb on - strand, within Sama_2669 at 3195.853 kb on - strand at 3195.971 kb on + strand, within Sama_2670 at 3195.971 kb on + strand, within Sama_2670 at 3196.100 kb on + strand, within Sama_2670 at 3196.101 kb on - strand, within Sama_2670 at 3196.121 kb on + strand, within Sama_2670 at 3196.153 kb on + strand, within Sama_2670 at 3196.246 kb on + strand at 3196.246 kb on + strand at 3196.247 kb on - strand at 3196.260 kb on + strand at 3196.260 kb on + strand at 3196.261 kb on - strand at 3196.270 kb on - strand at 3196.338 kb on + strand, within Sama_2671 at 3196.338 kb on + strand, within Sama_2671 at 3196.339 kb on - strand, within Sama_2671 at 3196.370 kb on + strand, within Sama_2671 at 3196.371 kb on - strand, within Sama_2671 at 3196.371 kb on - strand, within Sama_2671 at 3196.453 kb on + strand, within Sama_2671 at 3196.454 kb on - strand, within Sama_2671 at 3196.454 kb on - strand, within Sama_2671 at 3196.593 kb on + strand, within Sama_2671 at 3196.593 kb on + strand, within Sama_2671 at 3196.636 kb on - strand, within Sama_2671 at 3196.636 kb on - strand, within Sama_2671 at 3196.672 kb on + strand, within Sama_2671 at 3196.673 kb on - strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.677 kb on + strand, within Sama_2671 at 3196.678 kb on - strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.710 kb on + strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.711 kb on - strand, within Sama_2671 at 3196.715 kb on - strand, within Sama_2671 at 3196.715 kb on - strand, within Sama_2671 at 3196.751 kb on - strand, within Sama_2671 at 3196.751 kb on - strand, within Sama_2671 at 3196.766 kb on + strand, within Sama_2671 at 3196.849 kb on + strand, within Sama_2671 at 3196.849 kb on + strand, within Sama_2671 at 3196.850 kb on - strand, within Sama_2671 at 3196.859 kb on + strand, within Sama_2671 at 3196.859 kb on + strand, within Sama_2671 at 3196.859 kb on + strand, within Sama_2671 at 3196.860 kb on - strand, within Sama_2671 at 3196.860 kb on - strand, within Sama_2671 at 3196.860 kb on - strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.861 kb on + strand, within Sama_2671 at 3196.862 kb on - strand, within Sama_2671 at 3196.862 kb on - strand, within Sama_2671 at 3196.862 kb on - strand, within Sama_2671 at 3196.862 kb on - strand, within Sama_2671 at 3196.862 kb on - strand, within Sama_2671
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.00390625 mg/ml remove 3,194,308 + Sama_2667 0.71 -1.0 3,194,308 + Sama_2667 0.71 +0.6 3,194,308 + Sama_2667 0.71 -0.5 3,194,308 + Sama_2667 0.71 +0.0 3,194,308 + Sama_2667 0.71 -1.3 3,194,308 + Sama_2667 0.71 -1.8 3,194,308 + Sama_2667 0.71 -0.7 3,194,308 + Sama_2667 0.71 +0.6 3,194,309 - Sama_2667 0.71 +0.3 3,194,317 + Sama_2667 0.73 -2.2 3,194,317 + Sama_2667 0.73 -0.9 3,194,317 + Sama_2667 0.73 -1.5 3,194,318 - Sama_2667 0.73 -0.7 3,194,318 - Sama_2667 0.73 +0.6 3,194,318 - Sama_2667 0.73 +0.6 3,194,318 - Sama_2667 0.73 +0.4 3,194,318 - Sama_2667 0.73 -0.2 3,194,398 - +1.3 3,194,398 - +1.3 3,194,416 + +0.6 3,194,417 - -0.1 3,194,425 + -0.3 3,194,425 + +1.7 3,194,425 + -0.1 3,194,491 + +0.8 3,194,594 + Sama_2668 0.22 +0.1 3,195,138 + -1.1 3,195,200 - +0.6 3,195,240 - +1.4 3,195,311 + Sama_2669 0.13 +2.0 3,195,312 - Sama_2669 0.13 +0.8 3,195,314 + Sama_2669 0.13 +1.3 3,195,314 + Sama_2669 0.13 -0.1 3,195,314 + Sama_2669 0.13 -0.2 3,195,390 + Sama_2669 0.25 +1.0 3,195,390 + Sama_2669 0.25 -0.4 3,195,390 + Sama_2669 0.25 -2.0 3,195,391 - Sama_2669 0.25 +1.3 3,195,428 + Sama_2669 0.31 -2.1 3,195,428 + Sama_2669 0.31 +1.0 3,195,429 - Sama_2669 0.31 +0.9 3,195,429 - Sama_2669 0.31 +0.8 3,195,446 + Sama_2669 0.34 -1.1 3,195,453 + Sama_2669 0.35 -0.3 3,195,453 + Sama_2669 0.35 -0.1 3,195,453 + Sama_2669 0.35 -0.5 3,195,454 - Sama_2669 0.35 +0.9 3,195,454 - Sama_2669 0.35 +0.7 3,195,454 - Sama_2669 0.35 +0.7 3,195,454 - Sama_2669 0.35 +0.7 3,195,454 - Sama_2669 0.35 +0.6 3,195,454 - Sama_2669 0.35 +2.1 3,195,454 - Sama_2669 0.35 -0.5 3,195,456 - Sama_2669 0.35 +1.0 3,195,597 - Sama_2669 0.57 -0.1 3,195,636 + Sama_2669 0.63 +1.0 3,195,637 - Sama_2669 0.63 +0.5 3,195,637 - Sama_2669 0.63 +1.2 3,195,790 - Sama_2669 0.87 +1.6 3,195,790 - Sama_2669 0.87 +0.7 3,195,853 - +0.6 3,195,971 + Sama_2670 0.30 +0.9 3,195,971 + Sama_2670 0.30 +0.4 3,196,100 + Sama_2670 0.69 +3.5 3,196,101 - Sama_2670 0.69 +0.6 3,196,121 + Sama_2670 0.75 +0.8 3,196,153 + Sama_2670 0.85 +1.1 3,196,246 + +0.4 3,196,246 + +1.1 3,196,247 - +0.3 3,196,260 + -1.0 3,196,260 + -1.3 3,196,261 - +0.3 3,196,270 - +0.1 3,196,338 + Sama_2671 0.12 -1.0 3,196,338 + Sama_2671 0.12 -0.5 3,196,339 - Sama_2671 0.12 +0.5 3,196,370 + Sama_2671 0.16 +1.0 3,196,371 - Sama_2671 0.16 -0.7 3,196,371 - Sama_2671 0.16 -1.2 3,196,453 + Sama_2671 0.26 -0.4 3,196,454 - Sama_2671 0.26 -0.1 3,196,454 - Sama_2671 0.26 +0.8 3,196,593 + Sama_2671 0.42 -0.5 3,196,593 + Sama_2671 0.42 -0.1 3,196,636 - Sama_2671 0.48 +0.3 3,196,636 - Sama_2671 0.48 -0.4 3,196,672 + Sama_2671 0.52 +0.3 3,196,673 - Sama_2671 0.52 +0.9 3,196,677 + Sama_2671 0.52 -1.0 3,196,677 + Sama_2671 0.52 -0.3 3,196,677 + Sama_2671 0.52 +1.0 3,196,677 + Sama_2671 0.52 -0.0 3,196,677 + Sama_2671 0.52 -1.5 3,196,677 + Sama_2671 0.52 -0.9 3,196,678 - Sama_2671 0.53 -0.8 3,196,710 + Sama_2671 0.56 -1.4 3,196,710 + Sama_2671 0.56 +0.3 3,196,710 + Sama_2671 0.56 -0.7 3,196,710 + Sama_2671 0.56 -1.5 3,196,710 + Sama_2671 0.56 +0.3 3,196,710 + Sama_2671 0.56 +0.4 3,196,710 + Sama_2671 0.56 -1.2 3,196,710 + Sama_2671 0.56 -0.8 3,196,710 + Sama_2671 0.56 -0.6 3,196,710 + Sama_2671 0.56 +0.0 3,196,710 + Sama_2671 0.56 +0.8 3,196,710 + Sama_2671 0.56 -0.5 3,196,710 + Sama_2671 0.56 -0.1 3,196,711 - Sama_2671 0.56 -0.6 3,196,711 - Sama_2671 0.56 -0.4 3,196,711 - Sama_2671 0.56 -0.5 3,196,711 - Sama_2671 0.56 +0.9 3,196,711 - Sama_2671 0.56 +0.3 3,196,711 - Sama_2671 0.56 +0.4 3,196,711 - Sama_2671 0.56 -0.1 3,196,711 - Sama_2671 0.56 -0.7 3,196,711 - Sama_2671 0.56 +1.0 3,196,711 - Sama_2671 0.56 -0.1 3,196,715 - Sama_2671 0.57 +2.6 3,196,715 - Sama_2671 0.57 +0.6 3,196,751 - Sama_2671 0.61 -1.0 3,196,751 - Sama_2671 0.61 +1.3 3,196,766 + Sama_2671 0.63 -1.4 3,196,849 + Sama_2671 0.73 -0.2 3,196,849 + Sama_2671 0.73 -1.4 3,196,850 - Sama_2671 0.73 -0.3 3,196,859 + Sama_2671 0.74 -0.7 3,196,859 + Sama_2671 0.74 -1.5 3,196,859 + Sama_2671 0.74 +1.2 3,196,860 - Sama_2671 0.74 -0.3 3,196,860 - Sama_2671 0.74 -0.5 3,196,860 - Sama_2671 0.74 -0.2 3,196,861 + Sama_2671 0.74 -1.0 3,196,861 + Sama_2671 0.74 -0.7 3,196,861 + Sama_2671 0.74 -0.3 3,196,861 + Sama_2671 0.74 -2.4 3,196,861 + Sama_2671 0.74 +0.4 3,196,861 + Sama_2671 0.74 -0.1 3,196,861 + Sama_2671 0.74 +0.3 3,196,861 + Sama_2671 0.74 +0.7 3,196,861 + Sama_2671 0.74 -0.7 3,196,862 - Sama_2671 0.74 +1.0 3,196,862 - Sama_2671 0.74 -0.2 3,196,862 - Sama_2671 0.74 -1.0 3,196,862 - Sama_2671 0.74 +0.5 3,196,862 - Sama_2671 0.74 +0.8
Or see this region's nucleotide sequence