Strain Fitness in Shewanella amazonensis SB2B around Sama_2135

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
2,580,095	+	trpA	Sama_2134	0.13	+0.2
2,580,191	+	trpA	Sama_2134	0.25	-1.1
2,580,304	+	trpA	Sama_2134	0.39	+0.8
2,580,319	+	trpA	Sama_2134	0.41	-1.6
2,580,319	+	trpA	Sama_2134	0.41	-1.2
2,580,319	+	trpA	Sama_2134	0.41	-0.0
2,580,319	+	trpA	Sama_2134	0.41	-0.6
2,580,319	+	trpA	Sama_2134	0.41	-0.0
2,580,319	+	trpA	Sama_2134	0.41	-0.5
2,580,319	+	trpA	Sama_2134	0.41	-0.4
2,580,320	-	trpA	Sama_2134	0.41	-0.1
2,580,320	-	trpA	Sama_2134	0.41	-1.4
2,580,320	-	trpA	Sama_2134	0.41	-0.0
2,580,320	-	trpA	Sama_2134	0.41	+1.1
2,580,330	+	trpA	Sama_2134	0.43	+1.6
2,580,330	+	trpA	Sama_2134	0.43	+0.7
2,580,330	+	trpA	Sama_2134	0.43	-0.3
2,580,330	+	trpA	Sama_2134	0.43	+0.2
2,580,331	-	trpA	Sama_2134	0.43	-0.0
2,580,504	+	trpA	Sama_2134	0.64	-1.0
2,580,505	-	trpA	Sama_2134	0.65	-1.2
2,580,505	-	trpA	Sama_2134	0.65	+0.1
2,580,505	-	trpA	Sama_2134	0.65	+1.6
2,580,505	-	trpA	Sama_2134	0.65	-0.3
2,580,510	+	trpA	Sama_2134	0.65	+0.7
2,580,510	+	trpA	Sama_2134	0.65	+1.1
2,580,510	+	trpA	Sama_2134	0.65	+0.3
2,580,558	-	trpA	Sama_2134	0.71	-1.6
2,580,558	-	trpA	Sama_2134	0.71	-0.0
2,580,574	+	trpA	Sama_2134	0.73	-0.2
2,580,575	-	trpA	Sama_2134	0.73	-0.4
2,580,575	-	trpA	Sama_2134	0.73	-1.0
2,580,575	-	trpA	Sama_2134	0.73	-0.3
2,580,708	-	trpA	Sama_2134	0.90	+0.6
2,580,718	+				+0.2
2,580,719	-				-0.2
2,580,728	+				-0.7
2,580,729	-				-1.3
2,580,836	+				+1.3
2,580,836	+				+1.3
2,580,837	-				+0.1
2,580,837	-				-1.4
2,580,837	-				-0.5
2,580,837	-				-0.7
2,580,837	-				-0.3
2,580,837	-				-0.2
2,580,840	+				+0.8
2,580,840	+				+1.0
2,580,840	+				+1.0
2,580,840	+				-0.2
2,580,841	-				-1.7
2,580,841	-				+1.2
2,580,841	-				-1.7
2,580,905	-				-1.4
2,580,905	-				+0.1
2,580,905	-				-1.0
2,580,905	-				-0.2
2,580,926	-				+0.6
2,580,983	-				-1.4
2,580,990	-				+0.7
2,580,994	+				-0.0
2,581,066	+				-2.0
2,581,066	+				-0.1
2,581,066	+				+0.3
2,581,067	-				+2.2
2,581,067	-				-0.7
2,581,067	-				+0.2
2,581,134	-		Sama_2135	0.17	-1.0
2,581,178	+		Sama_2135	0.25	-0.8
2,581,179	-		Sama_2135	0.25	-1.6
2,581,185	-		Sama_2135	0.26	-0.4
2,581,255	+		Sama_2135	0.40	-0.0
2,581,256	-		Sama_2135	0.40	-1.2
2,581,256	-		Sama_2135	0.40	-1.5
2,581,369	-		Sama_2135	0.61	+1.3
2,581,391	+		Sama_2135	0.65	-0.7
2,581,391	+		Sama_2135	0.65	-0.2
2,581,392	-		Sama_2135	0.65	+0.5
2,581,399	+		Sama_2135	0.66	-0.5
2,581,436	+		Sama_2135	0.73	-1.2
2,581,608	+				-0.4
2,581,608	+				-0.7
2,581,608	+				+0.1
2,581,608	+				-0.4
2,581,608	+				-0.7
2,581,609	-				-1.2
2,581,615	+				-0.0
2,581,615	+				-0.5
2,581,690	+				-0.4
2,581,690	+				+1.6
2,581,691	-				+1.3
2,581,691	-				-2.2
2,581,693	+				-0.1
2,581,693	+				-0.4
2,581,693	+				-0.8
2,581,693	+				-0.7
2,581,693	+				-0.2
2,581,694	-				-1.4
2,581,694	-				+0.2
2,581,694	-				+0.5
2,581,694	-				-0.3
2,581,702	+				+1.9
2,581,703	-				+0.3
2,581,703	-				+0.1
2,581,802	+				+0.2
2,581,815	-				+0.7
2,581,855	-		Sama_2136	0.12	+0.4
2,581,865	+		Sama_2136	0.13	+1.9
2,581,869	+		Sama_2136	0.13	-1.2
2,581,869	+		Sama_2136	0.13	-0.3
2,581,869	+		Sama_2136	0.13	-0.1
2,581,869	+		Sama_2136	0.13	-0.6
2,581,870	-		Sama_2136	0.13	+0.1
2,581,870	-		Sama_2136	0.13	+0.0
2,581,898	+		Sama_2136	0.15	+1.0
2,581,898	+		Sama_2136	0.15	-0.3
2,581,899	-		Sama_2136	0.15	+0.9
2,581,899	-		Sama_2136	0.15	-0.6
2,581,899	-		Sama_2136	0.15	+1.3
2,582,084	+		Sama_2136	0.29	-1.0
2,582,084	+		Sama_2136	0.29	+0.1
2,582,084	+		Sama_2136	0.29	+0.3
2,582,085	-		Sama_2136	0.29	+0.4
2,582,085	-		Sama_2136	0.29	+0.7
2,582,129	+		Sama_2136	0.33	+0.5
2,582,129	+		Sama_2136	0.33	-0.2
2,582,130	-		Sama_2136	0.33	+1.6
2,582,130	-		Sama_2136	0.33	+0.2
2,582,168	+		Sama_2136	0.36	-0.9
2,582,178	-		Sama_2136	0.36	-1.0
2,582,246	-		Sama_2136	0.42	-0.4
2,582,246	-		Sama_2136	0.42	-0.1
2,582,307	-		Sama_2136	0.46	+0.1
2,582,320	+		Sama_2136	0.47	-1.1
2,582,321	-		Sama_2136	0.47	-0.3
2,582,321	-		Sama_2136	0.47	-1.3
2,582,358	-		Sama_2136	0.50	+1.1
2,582,448	+		Sama_2136	0.57	+0.0
2,582,448	+		Sama_2136	0.57	-0.7
2,582,448	+		Sama_2136	0.57	-0.4
2,582,448	+		Sama_2136	0.57	+0.5
2,582,449	-		Sama_2136	0.57	-1.1
2,582,449	-		Sama_2136	0.57	+1.0
2,582,449	-		Sama_2136	0.57	-0.1
2,582,449	-		Sama_2136	0.57	+0.2
2,582,456	+		Sama_2136	0.58	-0.3
2,582,457	-		Sama_2136	0.58	+0.5
2,582,459	-		Sama_2136	0.58	-0.4
2,582,505	+		Sama_2136	0.61	-0.2
2,582,515	-		Sama_2136	0.62	-1.2
2,582,515	-		Sama_2136	0.62	-1.9
2,582,515	-		Sama_2136	0.62	-0.8
2,582,515	-		Sama_2136	0.62	-0.7
2,582,515	-		Sama_2136	0.62	-2.7
2,582,559	+		Sama_2136	0.66	-1.2
2,582,559	+		Sama_2136	0.66	-0.4
2,582,559	+		Sama_2136	0.66	-0.4
2,582,559	+		Sama_2136	0.66	-0.5
2,582,560	-		Sama_2136	0.66	-2.0
2,582,560	-		Sama_2136	0.66	-0.5
2,582,560	-		Sama_2136	0.66	-0.4