Strain Fitness in Shewanella amazonensis SB2B around Sama_2020

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
2,454,715	-		Sama_2018	0.77	-0.0
2,454,752	-		Sama_2018	0.79	+0.6
2,454,752	-		Sama_2018	0.79	+0.3
2,454,752	-		Sama_2018	0.79	-0.4
2,454,779	+		Sama_2018	0.81	+0.3
2,454,808	+		Sama_2018	0.83	+0.1
2,454,826	+		Sama_2018	0.84	-0.8
2,454,832	-		Sama_2018	0.84	-0.4
2,454,832	-		Sama_2018	0.84	-0.4
2,454,855	-		Sama_2018	0.85	-1.0
2,454,878	+		Sama_2018	0.87	+0.2
2,454,878	+		Sama_2018	0.87	-0.6
2,454,878	+		Sama_2018	0.87	+1.8
2,454,878	+		Sama_2018	0.87	-0.4
2,454,879	-		Sama_2018	0.87	+0.5
2,454,879	-		Sama_2018	0.87	+0.2
2,454,879	-		Sama_2018	0.87	-0.7
2,454,879	-		Sama_2018	0.87	+0.2
2,454,920	+		Sama_2018	0.89	-0.1
2,454,921	-		Sama_2018	0.89	+0.2
2,454,938	-				-0.8
2,455,011	+				-0.6
2,455,018	+				-0.6
2,455,019	-				+0.4
2,455,043	+				-0.1
2,455,044	-				+1.0
2,455,119	+				+0.2
2,455,119	+				+1.5
2,455,120	-				+0.3
2,455,120	-				+0.6
2,455,121	+				+0.2
2,455,121	+				+0.2
2,455,189	+	ilvH	Sama_2019	0.16	-0.2
2,455,190	-	ilvH	Sama_2019	0.17	+1.6
2,455,191	+	ilvH	Sama_2019	0.17	+1.0
2,455,191	+	ilvH	Sama_2019	0.17	-1.2
2,455,192	-	ilvH	Sama_2019	0.17	+1.1
2,455,231	-	ilvH	Sama_2019	0.25	+0.2
2,455,251	+	ilvH	Sama_2019	0.29	-0.0
2,455,350	+	ilvH	Sama_2019	0.49	+0.4
2,455,465	+	ilvH	Sama_2019	0.72	-1.2
2,455,466	-	ilvH	Sama_2019	0.72	-0.3
2,455,510	-	ilvH	Sama_2019	0.81	-1.1
2,455,547	+	ilvH	Sama_2019	0.89	-0.2
2,455,547	+	ilvH	Sama_2019	0.89	+1.1
2,455,585	-				+0.6
2,455,585	-				-0.4
2,455,622	+				+0.4
2,455,622	+				-0.8
2,455,623	-				+0.6
2,455,659	-				+0.4
2,455,663	-				-0.9
2,455,712	-				+0.4
2,455,797	-		Sama_2020	0.20	+0.2
2,455,797	-		Sama_2020	0.20	+0.8
2,455,820	-		Sama_2020	0.25	+0.6
2,455,820	-		Sama_2020	0.25	+0.6
2,455,820	-		Sama_2020	0.25	+0.1
2,455,841	-		Sama_2020	0.30	+0.5
2,455,841	-		Sama_2020	0.30	+0.5
2,455,898	-		Sama_2020	0.42	+0.1
2,455,898	-		Sama_2020	0.42	-0.0
2,455,898	-		Sama_2020	0.42	-1.1
2,455,898	-		Sama_2020	0.42	+0.2
2,455,929	-		Sama_2020	0.49	-1.4
2,455,929	-		Sama_2020	0.49	+1.2
2,456,041	+		Sama_2020	0.75	+0.3
2,456,041	+		Sama_2020	0.75	+0.8
2,456,042	-		Sama_2020	0.75	-0.2
2,456,042	-		Sama_2020	0.75	-0.6
2,456,144	-				-0.4
2,456,147	+				-0.9
2,456,148	-				+1.3
2,456,148	-				+0.2
2,456,158	+				+0.3
2,456,159	-				+0.8
2,456,159	-				-0.0
2,456,159	-				+1.3
2,456,159	-				+0.2
2,456,160	+				-0.0
2,456,161	-				+1.3
2,456,161	-				-0.8
2,456,161	-				-2.1
2,456,161	-				+0.1
2,456,172	-				+0.1
2,456,178	+				+1.6
2,456,178	+				-2.0
2,456,179	-				+0.6
2,456,180	+				+1.4
2,456,180	+				+1.1
2,456,180	+				+0.5
2,456,215	+				+0.7
2,456,215	+				+2.6
2,456,215	+				+0.3
2,456,215	+				+1.3
2,456,216	-				+1.9
2,456,221	-				-0.0
2,456,221	-				+0.8
2,456,236	-				+0.2
2,456,267	+				+0.6
2,456,267	+				+1.6
2,456,267	+				-0.4
2,456,268	-				+0.2
2,456,268	-				+1.3
2,456,356	-				-0.0
2,456,417	-				-0.0
2,456,417	-				+0.7
2,456,424	+				+0.4
2,456,425	-				+0.2
2,456,466	+				+0.8
2,456,467	-				-0.3
2,456,483	+				+0.1
2,456,483	+				+0.8
2,456,483	+				-0.4
2,456,484	-				+0.6
2,456,484	-				+0.8
2,456,484	-				+1.1
2,456,484	-				+0.1
2,456,487	+				-1.4
2,456,511	-				+0.3
2,456,562	+	ushA	Sama_2021	0.12	-0.3
2,456,562	+	ushA	Sama_2021	0.12	-0.2
2,456,563	-	ushA	Sama_2021	0.12	+0.3
2,456,563	-	ushA	Sama_2021	0.12	-0.4
2,456,563	-	ushA	Sama_2021	0.12	+1.6
2,456,623	+	ushA	Sama_2021	0.16	-0.6
2,456,623	+	ushA	Sama_2021	0.16	-1.0
2,456,624	-	ushA	Sama_2021	0.16	+0.6
2,456,624	-	ushA	Sama_2021	0.16	-0.5
2,456,624	-	ushA	Sama_2021	0.16	+0.6
2,456,661	+	ushA	Sama_2021	0.18	+1.1
2,456,662	-	ushA	Sama_2021	0.18	+1.2
2,456,662	-	ushA	Sama_2021	0.18	+0.9
2,456,683	+	ushA	Sama_2021	0.19	+0.6
2,456,703	+	ushA	Sama_2021	0.20	+0.2
2,456,703	+	ushA	Sama_2021	0.20	+0.2
2,456,704	-	ushA	Sama_2021	0.20	+1.2
2,456,762	+	ushA	Sama_2021	0.24	+1.3
2,456,771	+	ushA	Sama_2021	0.24	+0.6
2,456,831	+	ushA	Sama_2021	0.28	+0.6
2,456,832	-	ushA	Sama_2021	0.28	+0.3
2,456,832	-	ushA	Sama_2021	0.28	-0.4
2,456,832	-	ushA	Sama_2021	0.28	-0.3
2,456,856	-	ushA	Sama_2021	0.29	+0.7
2,456,906	+	ushA	Sama_2021	0.32	-0.0
2,456,906	+	ushA	Sama_2021	0.32	+1.6
2,456,907	-	ushA	Sama_2021	0.32	-0.1
2,456,907	-	ushA	Sama_2021	0.32	+0.2
2,456,912	-	ushA	Sama_2021	0.33	+0.4
2,456,986	-	ushA	Sama_2021	0.37	+0.8
2,456,986	-	ushA	Sama_2021	0.37	-0.0
2,456,988	+	ushA	Sama_2021	0.37	+0.2
2,456,989	-	ushA	Sama_2021	0.37	+2.8
2,456,989	-	ushA	Sama_2021	0.37	+0.9
2,457,036	-	ushA	Sama_2021	0.40	+0.4
2,457,036	-	ushA	Sama_2021	0.40	-2.1
2,457,036	-	ushA	Sama_2021	0.40	+1.1
2,457,041	+	ushA	Sama_2021	0.40	-0.8
2,457,046	+	ushA	Sama_2021	0.40	+0.2
2,457,046	+	ushA	Sama_2021	0.40	-0.4
2,457,046	+	ushA	Sama_2021	0.40	+1.2
2,457,046	+	ushA	Sama_2021	0.40	+1.0
2,457,047	-	ushA	Sama_2021	0.40	+0.6
2,457,047	-	ushA	Sama_2021	0.40	-1.0
2,457,047	-	ushA	Sama_2021	0.40	+1.0
2,457,047	-	ushA	Sama_2021	0.40	-0.0
2,457,135	+	ushA	Sama_2021	0.46	+0.4