Strain Fitness in Shewanella amazonensis SB2B around Sama_1959

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
2,387,660	+		Sama_1957	0.21	-1.9
2,387,660	+		Sama_1957	0.21	-0.1
2,387,808	+		Sama_1957	0.61	+0.7
2,387,864	+		Sama_1957	0.76	-0.8
2,387,865	-		Sama_1957	0.77	-0.1
2,387,875	-		Sama_1957	0.79	-1.1
2,387,918	-				+0.3
2,388,117	-		Sama_1958	0.37	-0.7
2,388,150	+		Sama_1958	0.47	+1.3
2,388,151	-		Sama_1958	0.47	+1.5
2,388,248	-		Sama_1958	0.75	+1.2
2,388,293	-		Sama_1958	0.87	+0.5
2,388,296	+		Sama_1958	0.88	-0.5
2,388,297	-		Sama_1958	0.89	+0.5
2,388,297	-		Sama_1958	0.89	-0.9
2,388,302	-				-0.9
2,388,302	-				+0.9
2,388,315	-				+1.0
2,388,348	+				-1.3
2,388,386	-				+0.2
2,388,432	-				-0.2
2,388,551	-		Sama_1959	0.21	+0.0
2,388,583	-		Sama_1959	0.27	+0.4
2,388,631	-		Sama_1959	0.35	-1.0
2,388,709	+		Sama_1959	0.48	+0.9
2,388,710	-		Sama_1959	0.49	+0.6
2,388,789	+		Sama_1959	0.62	-0.2
2,388,790	-		Sama_1959	0.62	+0.7
2,388,796	-		Sama_1959	0.64	-0.5
2,388,816	+		Sama_1959	0.67	+1.9
2,388,993	+				-0.8
2,388,999	+				-0.3
2,389,000	-				+0.1
2,389,054	-				-0.2
2,389,054	-				+0.7
2,389,093	-				+0.5
2,389,093	-				-0.0
2,389,094	+				-0.0
2,389,094	+				+0.5
2,389,094	+				+0.7
2,389,095	-				-1.8
2,389,095	-				-0.8
2,389,095	-				-0.2
2,389,095	-				+0.5
2,389,101	-				+0.5
2,389,101	-				-0.4
2,389,161	+				+1.1
2,389,162	-				-0.5
2,389,162	-				+0.4
2,389,166	+				-0.2
2,389,166	+				-0.0
2,389,167	-				+1.7
2,389,167	-				-0.3
2,389,167	-				-0.5
2,389,212	+		Sama_1960	0.11	+0.8
2,389,212	+		Sama_1960	0.11	-2.5
2,389,218	-		Sama_1960	0.14	+0.4
2,389,218	-		Sama_1960	0.14	-0.0
2,389,277	+		Sama_1960	0.41	-0.3
2,389,277	+		Sama_1960	0.41	-0.4
2,389,277	+		Sama_1960	0.41	+0.5
2,389,277	+		Sama_1960	0.41	+0.4
2,389,278	-		Sama_1960	0.42	+0.3
2,389,278	-		Sama_1960	0.42	+0.1
2,389,278	-		Sama_1960	0.42	+0.5
2,389,278	-		Sama_1960	0.42	-0.0
2,389,302	+		Sama_1960	0.53	+0.3
2,389,302	+		Sama_1960	0.53	-0.0