Strain Fitness in Shewanella amazonensis SB2B around Sama_1870

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
2,277,771	-		Sama_1869	0.14	+0.2
2,277,782	-		Sama_1869	0.15	-0.8
2,277,894	-		Sama_1869	0.29	+0.7
2,277,944	-		Sama_1869	0.35	+0.9
2,277,991	-		Sama_1869	0.41	-0.4
2,278,121	-		Sama_1869	0.57	-1.3
2,278,121	-		Sama_1869	0.57	+0.6
2,278,121	-		Sama_1869	0.57	+0.0
2,278,126	+		Sama_1869	0.58	-0.1
2,278,155	+		Sama_1869	0.61	-0.3
2,278,155	+		Sama_1869	0.61	-1.7
2,278,155	+		Sama_1869	0.61	-0.2
2,278,155	+		Sama_1869	0.61	-0.6
2,278,156	-		Sama_1869	0.61	-1.1
2,278,156	-		Sama_1869	0.61	-0.8
2,278,156	-		Sama_1869	0.61	+0.5
2,278,156	-		Sama_1869	0.61	+1.2
2,278,156	-		Sama_1869	0.61	-0.1
2,278,165	+		Sama_1869	0.62	-2.3
2,278,166	-		Sama_1869	0.63	+0.7
2,278,166	-		Sama_1869	0.63	+0.5
2,278,176	-		Sama_1869	0.64	-1.0
2,278,244	+		Sama_1869	0.72	-0.8
2,278,245	-		Sama_1869	0.72	+0.0
2,278,276	+		Sama_1869	0.76	+0.1
2,278,276	+		Sama_1869	0.76	-0.2
2,278,276	+		Sama_1869	0.76	-0.7
2,278,277	-		Sama_1869	0.76	+0.1
2,278,277	-		Sama_1869	0.76	-1.0
2,278,277	-		Sama_1869	0.76	+0.7
2,278,347	+		Sama_1869	0.85	-1.5
2,278,347	+		Sama_1869	0.85	-1.4
2,278,348	-		Sama_1869	0.85	+0.5
2,278,355	-		Sama_1869	0.86	-1.5
2,278,457	+				-1.3
2,278,468	+				+0.5
2,278,468	+				+0.8
2,278,469	-				-1.6
2,278,494	+				+0.3
2,278,494	+				+0.5
2,278,503	+				-0.5
2,278,503	+				-1.3
2,278,503	+				-0.8
2,278,508	+				+1.9
2,278,508	+				-0.2
2,278,508	+				+0.3
2,278,509	-				+0.3
2,278,509	-				-0.5
2,278,509	-				-0.3
2,278,509	-				+1.8
2,278,514	-				+0.5
2,278,605	+				+0.2
2,278,613	-				+1.5
2,278,639	+				-0.4
2,278,639	+				+0.5
2,278,640	-				+0.2
2,278,641	+				+0.8
2,278,641	+				+0.5
2,278,662	-				-1.1
2,278,663	+				-0.5
2,278,663	+				-0.5
2,278,663	+				-1.3
2,278,685	+				+1.9
2,278,717	-				-0.3
2,278,726	+				+0.9
2,278,805	-				+0.1
2,278,886	-				-2.0
2,279,029	+	fadE	Sama_1870	0.13	+1.2
2,279,225	+	fadE	Sama_1870	0.21	-0.3
2,279,225	+	fadE	Sama_1870	0.21	-0.3
2,279,226	-	fadE	Sama_1870	0.21	+0.6
2,279,412	+	fadE	Sama_1870	0.29	+1.1
2,279,412	+	fadE	Sama_1870	0.29	-0.4
2,279,544	-	fadE	Sama_1870	0.34	+1.0
2,279,544	-	fadE	Sama_1870	0.34	+0.5
2,279,656	+	fadE	Sama_1870	0.39	-1.5
2,279,656	+	fadE	Sama_1870	0.39	+0.2
2,279,707	+	fadE	Sama_1870	0.41	+0.5
2,279,707	+	fadE	Sama_1870	0.41	-0.5
2,279,708	-	fadE	Sama_1870	0.41	-0.5
2,279,708	-	fadE	Sama_1870	0.41	-1.9
2,279,755	-	fadE	Sama_1870	0.43	-0.4
2,279,801	-	fadE	Sama_1870	0.45	+0.2
2,279,801	-	fadE	Sama_1870	0.45	+0.2
2,279,801	-	fadE	Sama_1870	0.45	-0.3
2,279,895	-	fadE	Sama_1870	0.49	-1.3
2,279,944	+	fadE	Sama_1870	0.51	-0.8
2,279,944	+	fadE	Sama_1870	0.51	+0.1
2,280,065	+	fadE	Sama_1870	0.56	-0.8
2,280,065	+	fadE	Sama_1870	0.56	-1.0
2,280,082	+	fadE	Sama_1870	0.56	-0.7
2,280,082	+	fadE	Sama_1870	0.56	-1.4
2,280,152	+	fadE	Sama_1870	0.59	-0.3
2,280,153	-	fadE	Sama_1870	0.59	+0.2
2,280,223	+	fadE	Sama_1870	0.62	+0.5
2,280,223	+	fadE	Sama_1870	0.62	-0.1
2,280,223	+	fadE	Sama_1870	0.62	+0.2
2,280,233	+	fadE	Sama_1870	0.62	-0.3
2,280,233	+	fadE	Sama_1870	0.62	-0.6
2,280,233	+	fadE	Sama_1870	0.62	-0.6
2,280,233	+	fadE	Sama_1870	0.62	-1.1
2,280,233	+	fadE	Sama_1870	0.62	+0.6
2,280,263	+	fadE	Sama_1870	0.64	-0.2
2,280,263	+	fadE	Sama_1870	0.64	+0.0
2,280,264	-	fadE	Sama_1870	0.64	-2.0
2,280,264	-	fadE	Sama_1870	0.64	-0.7
2,280,267	+	fadE	Sama_1870	0.64	+0.8
2,280,267	+	fadE	Sama_1870	0.64	-0.5
2,280,319	+	fadE	Sama_1870	0.66	-0.9
2,280,355	+	fadE	Sama_1870	0.67	+1.5
2,280,355	+	fadE	Sama_1870	0.67	+0.6
2,280,356	-	fadE	Sama_1870	0.67	-0.8
2,280,356	-	fadE	Sama_1870	0.67	-1.1
2,280,444	-	fadE	Sama_1870	0.71	-0.1
2,280,529	+	fadE	Sama_1870	0.74	+1.1
2,280,529	+	fadE	Sama_1870	0.74	+0.8
2,280,538	+	fadE	Sama_1870	0.75	-0.5
2,280,539	-	fadE	Sama_1870	0.75	+0.4
2,280,575	+	fadE	Sama_1870	0.76	+0.8
2,280,575	+	fadE	Sama_1870	0.76	-0.3
2,280,576	-	fadE	Sama_1870	0.76	-0.1
2,280,603	-	fadE	Sama_1870	0.77	-0.5
2,280,783	+	fadE	Sama_1870	0.85	+0.0
2,280,783	+	fadE	Sama_1870	0.85	-1.5
2,280,784	-	fadE	Sama_1870	0.85	-1.0
2,280,932	+				-0.9
2,280,933	-				+0.7
2,280,942	+				+0.1
2,280,942	+				-0.7
2,280,943	-				-0.1
2,280,943	-				+0.6
2,281,004	-				-1.1
2,281,151	+				-1.1
2,281,151	+				-2.3
2,281,152	-				+0.2
2,281,152	-				+1.5
2,281,171	-				+0.6
2,281,248	-				+0.8
2,281,248	-				-0.8
2,281,248	-				+1.2
2,281,492	-		Sama_1871	0.11	-1.1
2,281,523	-		Sama_1871	0.12	-0.8
2,281,523	-		Sama_1871	0.12	-0.1
2,281,568	-		Sama_1871	0.15	+0.3
2,281,568	-		Sama_1871	0.15	+1.5
2,281,590	+		Sama_1871	0.16	-0.6
2,281,591	-		Sama_1871	0.16	-0.7
2,281,664	-		Sama_1871	0.19	-2.0
2,281,740	-		Sama_1871	0.23	-0.8
2,281,790	-		Sama_1871	0.26	+0.9
2,281,824	+		Sama_1871	0.27	-0.2
2,281,824	+		Sama_1871	0.27	-0.1
2,281,856	+		Sama_1871	0.29	-1.3
2,281,856	+		Sama_1871	0.29	-1.6
2,281,875	-		Sama_1871	0.30	-0.3
2,281,875	-		Sama_1871	0.30	-2.2
2,281,912	-		Sama_1871	0.32	-2.0
2,281,912	-		Sama_1871	0.32	-0.8
2,281,912	-		Sama_1871	0.32	+0.2
2,281,912	-		Sama_1871	0.32	-1.0
2,281,948	-		Sama_1871	0.34	-0.5
2,281,948	-		Sama_1871	0.34	-1.3
2,281,994	-		Sama_1871	0.36	-0.0
2,282,107	+		Sama_1871	0.41	-0.9
2,282,147	-		Sama_1871	0.43	-1.2