Strain Fitness in Shewanella amazonensis SB2B around Sama_1612

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,969,298	-		Sama_1610	0.57	-0.7
1,969,298	-		Sama_1610	0.57	+0.3
1,969,333	+		Sama_1610	0.60	+1.2
1,969,334	-		Sama_1610	0.60	+1.5
1,969,360	+		Sama_1610	0.62	+0.5
1,969,368	-		Sama_1610	0.63	+0.3
1,969,374	+		Sama_1610	0.64	+0.3
1,969,375	-		Sama_1610	0.64	+0.5
1,969,387	+		Sama_1610	0.65	+0.8
1,969,388	-		Sama_1610	0.65	+0.5
1,969,423	+		Sama_1610	0.68	+0.7
1,969,424	-		Sama_1610	0.68	-0.0
1,969,424	-		Sama_1610	0.68	+0.7
1,969,440	+		Sama_1610	0.69	-0.7
1,969,460	-		Sama_1610	0.71	-0.2
1,969,460	-		Sama_1610	0.71	+1.0
1,969,577	+		Sama_1610	0.81	-2.8
1,969,578	-		Sama_1610	0.81	+0.5
1,969,578	-		Sama_1610	0.81	+0.4
1,969,578	-		Sama_1610	0.81	-0.5
1,969,579	+		Sama_1610	0.81	-0.4
1,969,579	+		Sama_1610	0.81	-1.5
1,969,579	+		Sama_1610	0.81	+0.2
1,969,579	+		Sama_1610	0.81	-0.9
1,969,579	+		Sama_1610	0.81	-1.0
1,969,579	+		Sama_1610	0.81	+0.4
1,969,579	+		Sama_1610	0.81	+3.9
1,969,579	+		Sama_1610	0.81	+0.3
1,969,579	+		Sama_1610	0.81	-0.2
1,969,579	+		Sama_1610	0.81	+0.4
1,969,579	+		Sama_1610	0.81	-1.3
1,969,579	+		Sama_1610	0.81	-0.7
1,969,580	-		Sama_1610	0.81	+2.5
1,969,580	-		Sama_1610	0.81	+0.3
1,969,580	-		Sama_1610	0.81	+1.2
1,969,580	-		Sama_1610	0.81	+0.1
1,969,580	-		Sama_1610	0.81	+0.5
1,969,580	-		Sama_1610	0.81	+0.7
1,969,586	-		Sama_1610	0.82	+0.5
1,969,602	+		Sama_1610	0.83	-0.2
1,969,654	+		Sama_1610	0.88	-0.5
1,969,654	+		Sama_1610	0.88	+0.8
1,969,654	+		Sama_1610	0.88	+0.5
1,969,655	-		Sama_1610	0.88	+0.5
1,969,718	+				+1.0
1,969,718	+				-0.1
1,969,719	-				+1.5
1,969,719	-				+0.5
1,969,719	-				+1.9
1,969,720	+				+1.4
1,969,720	+				+0.1
1,969,720	+				-0.6
1,969,721	-				+0.5
1,969,721	-				+0.5
1,969,721	-				+1.3
1,969,721	-				-0.3
1,969,721	-				-0.2
1,969,725	+				-0.1
1,969,726	-				+0.1
1,969,726	-				+0.2
1,969,726	-				-0.0
1,969,741	-				+0.1
1,969,781	-				-0.6
1,969,781	-				-0.2
1,969,781	-				+0.0
1,969,802	+				-1.6
1,969,802	+				+0.3
1,969,878	+		Sama_1611	0.35	-0.0
1,969,879	-		Sama_1611	0.35	+0.9
1,969,879	-		Sama_1611	0.35	+0.9
1,970,105	+				-1.3
1,970,105	+				-1.3
1,970,105	+				-0.3
1,970,107	+				+0.5
1,970,193	+				-1.3
1,970,193	+				+1.1
1,970,194	-				+0.5
1,970,223	+				-0.6
1,970,224	-				+1.0
1,970,331	+				-0.3
1,970,401	+				-0.1
1,970,402	-				-1.9
1,970,455	-		Sama_1612	0.14	+0.5
1,970,459	+		Sama_1612	0.14	+0.5
1,970,460	-		Sama_1612	0.14	-0.4
1,970,602	+		Sama_1612	0.24	-0.0
1,970,605	+		Sama_1612	0.24	-1.5
1,970,605	+		Sama_1612	0.24	-0.4
1,970,636	+		Sama_1612	0.26	-0.6
1,970,729	+		Sama_1612	0.33	-0.5
1,970,730	-		Sama_1612	0.33	-1.6
1,970,895	+		Sama_1612	0.45	-0.4
1,970,896	-		Sama_1612	0.45	+0.8
1,970,946	+		Sama_1612	0.48	+1.2
1,970,951	-		Sama_1612	0.49	+1.3
1,970,951	-		Sama_1612	0.49	-1.0
1,970,951	-		Sama_1612	0.49	+0.1
1,970,988	+		Sama_1612	0.51	+0.5
1,970,989	-		Sama_1612	0.51	-0.0
1,971,071	+		Sama_1612	0.57	-0.8
1,971,185	+		Sama_1612	0.65	+0.7
1,971,186	-		Sama_1612	0.65	-0.4
1,971,198	+		Sama_1612	0.66	-0.5
1,971,198	+		Sama_1612	0.66	-0.0
1,971,198	+		Sama_1612	0.66	+1.1
1,971,198	+		Sama_1612	0.66	-0.0
1,971,198	+		Sama_1612	0.66	-0.6
1,971,199	-		Sama_1612	0.66	+0.7
1,971,199	-		Sama_1612	0.66	+1.2
1,971,199	-		Sama_1612	0.66	+0.8
1,971,218	+		Sama_1612	0.67	+0.7
1,971,297	+		Sama_1612	0.73	-2.0
1,971,298	-		Sama_1612	0.73	+0.1
1,971,368	+		Sama_1612	0.78	+0.3
1,971,369	-		Sama_1612	0.78	+0.8
1,971,375	+		Sama_1612	0.78	+0.4
1,971,700	-				+0.1
1,971,746	-				-0.5
1,971,753	-				+0.6
1,971,768	-				+1.5
1,971,782	-				+0.3
1,971,858	+				-0.2
1,971,858	+				+1.7
1,971,859	-				-1.8
1,971,949	+		Sama_1613	0.13	+1.3
1,971,989	+		Sama_1613	0.21	-2.4
1,972,003	+		Sama_1613	0.24	+3.1
1,972,004	-		Sama_1613	0.24	+0.5
1,972,008	-		Sama_1613	0.25	-0.6
1,972,135	+		Sama_1613	0.51	+0.0
1,972,135	+		Sama_1613	0.51	-0.9
1,972,135	+		Sama_1613	0.51	-0.9
1,972,136	-		Sama_1613	0.51	+2.1
1,972,148	-		Sama_1613	0.54	+0.2
1,972,180	+		Sama_1613	0.60	-0.6
1,972,180	+		Sama_1613	0.60	-0.9
1,972,180	+		Sama_1613	0.60	+0.5
1,972,180	+		Sama_1613	0.60	+1.0
1,972,181	-		Sama_1613	0.60	-0.5
1,972,189	+		Sama_1613	0.62	-0.9
1,972,225	+		Sama_1613	0.69	+0.1
1,972,225	+		Sama_1613	0.69	-0.2
1,972,225	+		Sama_1613	0.69	-0.3
1,972,226	-		Sama_1613	0.70	+0.2
1,972,300	+		Sama_1613	0.85	+0.3
1,972,301	-		Sama_1613	0.85	-0.3
1,972,301	-		Sama_1613	0.85	-0.0
1,972,319	+		Sama_1613	0.88	-0.6
1,972,319	+		Sama_1613	0.88	-0.2
1,972,320	-		Sama_1613	0.89	-0.2
1,972,322	+		Sama_1613	0.89	+1.1
1,972,383	-				+0.3
1,972,418	-				-0.8
1,972,425	+				+0.7
1,972,426	-				-2.4
1,972,546	-				-0.3
1,972,679	-				+0.5