Strain Fitness in Shewanella amazonensis SB2B around Sama_1611

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,968,874	+		Sama_1610	0.21	+0.1
1,968,883	+		Sama_1610	0.21	-0.0
1,968,974	+		Sama_1610	0.29	+0.5
1,968,974	+		Sama_1610	0.29	-1.6
1,968,975	-		Sama_1610	0.29	+0.5
1,969,010	+		Sama_1610	0.32	+0.1
1,969,010	+		Sama_1610	0.32	+1.2
1,969,010	+		Sama_1610	0.32	+0.3
1,969,011	-		Sama_1610	0.32	+1.4
1,969,011	-		Sama_1610	0.32	+1.1
1,969,012	+		Sama_1610	0.33	+0.3
1,969,012	+		Sama_1610	0.33	-1.3
1,969,012	+		Sama_1610	0.33	+1.3
1,969,012	+		Sama_1610	0.33	+2.1
1,969,013	-		Sama_1610	0.33	-0.3
1,969,013	-		Sama_1610	0.33	+2.1
1,969,098	+		Sama_1610	0.40	+0.3
1,969,098	+		Sama_1610	0.40	+0.4
1,969,101	-		Sama_1610	0.40	-0.0
1,969,120	+		Sama_1610	0.42	+1.0
1,969,121	-		Sama_1610	0.42	-0.3
1,969,122	+		Sama_1610	0.42	-2.4
1,969,122	+		Sama_1610	0.42	+1.1
1,969,122	+		Sama_1610	0.42	-1.9
1,969,122	+		Sama_1610	0.42	+1.2
1,969,122	+		Sama_1610	0.42	-0.5
1,969,122	+		Sama_1610	0.42	-0.0
1,969,122	+		Sama_1610	0.42	+0.1
1,969,122	+		Sama_1610	0.42	+0.1
1,969,123	-		Sama_1610	0.42	+0.5
1,969,123	-		Sama_1610	0.42	-0.3
1,969,123	-		Sama_1610	0.42	+2.1
1,969,136	-		Sama_1610	0.43	+1.3
1,969,162	+		Sama_1610	0.45	-1.5
1,969,162	+		Sama_1610	0.45	+0.7
1,969,162	+		Sama_1610	0.45	-0.8
1,969,163	-		Sama_1610	0.46	-1.5
1,969,163	-		Sama_1610	0.46	-0.6
1,969,164	+		Sama_1610	0.46	+0.4
1,969,164	+		Sama_1610	0.46	+0.3
1,969,164	+		Sama_1610	0.46	-0.9
1,969,164	+		Sama_1610	0.46	+0.0
1,969,164	+		Sama_1610	0.46	-0.0
1,969,164	+		Sama_1610	0.46	-0.6
1,969,164	+		Sama_1610	0.46	-0.5
1,969,165	-		Sama_1610	0.46	-0.2
1,969,165	-		Sama_1610	0.46	-0.3
1,969,165	-		Sama_1610	0.46	-0.0
1,969,168	+		Sama_1610	0.46	+0.2
1,969,168	+		Sama_1610	0.46	-0.5
1,969,298	-		Sama_1610	0.57	-0.7
1,969,298	-		Sama_1610	0.57	+0.3
1,969,333	+		Sama_1610	0.60	+1.2
1,969,334	-		Sama_1610	0.60	+1.5
1,969,360	+		Sama_1610	0.62	+0.5
1,969,368	-		Sama_1610	0.63	+0.3
1,969,374	+		Sama_1610	0.64	+0.3
1,969,375	-		Sama_1610	0.64	+0.5
1,969,387	+		Sama_1610	0.65	+0.8
1,969,388	-		Sama_1610	0.65	+0.5
1,969,423	+		Sama_1610	0.68	+0.7
1,969,424	-		Sama_1610	0.68	-0.0
1,969,424	-		Sama_1610	0.68	+0.7
1,969,440	+		Sama_1610	0.69	-0.7
1,969,460	-		Sama_1610	0.71	-0.2
1,969,460	-		Sama_1610	0.71	+1.0
1,969,577	+		Sama_1610	0.81	-2.8
1,969,578	-		Sama_1610	0.81	+0.5
1,969,578	-		Sama_1610	0.81	+0.4
1,969,578	-		Sama_1610	0.81	-0.5
1,969,579	+		Sama_1610	0.81	-0.4
1,969,579	+		Sama_1610	0.81	-1.5
1,969,579	+		Sama_1610	0.81	+0.2
1,969,579	+		Sama_1610	0.81	-0.9
1,969,579	+		Sama_1610	0.81	-1.0
1,969,579	+		Sama_1610	0.81	+0.4
1,969,579	+		Sama_1610	0.81	+3.9
1,969,579	+		Sama_1610	0.81	+0.3
1,969,579	+		Sama_1610	0.81	-0.2
1,969,579	+		Sama_1610	0.81	+0.4
1,969,579	+		Sama_1610	0.81	-1.3
1,969,579	+		Sama_1610	0.81	-0.7
1,969,580	-		Sama_1610	0.81	+2.5
1,969,580	-		Sama_1610	0.81	+0.3
1,969,580	-		Sama_1610	0.81	+1.2
1,969,580	-		Sama_1610	0.81	+0.1
1,969,580	-		Sama_1610	0.81	+0.5
1,969,580	-		Sama_1610	0.81	+0.7
1,969,586	-		Sama_1610	0.82	+0.5
1,969,602	+		Sama_1610	0.83	-0.2
1,969,654	+		Sama_1610	0.88	-0.5
1,969,654	+		Sama_1610	0.88	+0.8
1,969,654	+		Sama_1610	0.88	+0.5
1,969,655	-		Sama_1610	0.88	+0.5
1,969,718	+				+1.0
1,969,718	+				-0.1
1,969,719	-				+1.5
1,969,719	-				+0.5
1,969,719	-				+1.9
1,969,720	+				+1.4
1,969,720	+				+0.1
1,969,720	+				-0.6
1,969,721	-				+0.5
1,969,721	-				+0.5
1,969,721	-				+1.3
1,969,721	-				-0.3
1,969,721	-				-0.2
1,969,725	+				-0.1
1,969,726	-				+0.1
1,969,726	-				+0.2
1,969,726	-				-0.0
1,969,741	-				+0.1
1,969,781	-				-0.6
1,969,781	-				-0.2
1,969,781	-				+0.0
1,969,802	+				-1.6
1,969,802	+				+0.3
1,969,878	+		Sama_1611	0.35	-0.0
1,969,879	-		Sama_1611	0.35	+0.9
1,969,879	-		Sama_1611	0.35	+0.9
1,970,105	+				-1.3
1,970,105	+				-1.3
1,970,105	+				-0.3
1,970,107	+				+0.5
1,970,193	+				-1.3
1,970,193	+				+1.1
1,970,194	-				+0.5
1,970,223	+				-0.6
1,970,224	-				+1.0
1,970,331	+				-0.3
1,970,401	+				-0.1
1,970,402	-				-1.9
1,970,455	-		Sama_1612	0.14	+0.5
1,970,459	+		Sama_1612	0.14	+0.5
1,970,460	-		Sama_1612	0.14	-0.4
1,970,602	+		Sama_1612	0.24	-0.0
1,970,605	+		Sama_1612	0.24	-1.5
1,970,605	+		Sama_1612	0.24	-0.4
1,970,636	+		Sama_1612	0.26	-0.6
1,970,729	+		Sama_1612	0.33	-0.5
1,970,730	-		Sama_1612	0.33	-1.6
1,970,895	+		Sama_1612	0.45	-0.4
1,970,896	-		Sama_1612	0.45	+0.8
1,970,946	+		Sama_1612	0.48	+1.2
1,970,951	-		Sama_1612	0.49	+1.3
1,970,951	-		Sama_1612	0.49	-1.0
1,970,951	-		Sama_1612	0.49	+0.1
1,970,988	+		Sama_1612	0.51	+0.5
1,970,989	-		Sama_1612	0.51	-0.0