Strain Fitness in Shewanella amazonensis SB2B around Sama_1570

Experiment: Sisomicin 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.00390625 mg/ml
1,913,717	+		Sama_1569	0.33	-2.4
1,913,821	+		Sama_1569	0.42	+0.3
1,913,821	+		Sama_1569	0.42	-1.0
1,913,821	+		Sama_1569	0.42	+1.0
1,913,821	+		Sama_1569	0.42	-1.3
1,913,822	-		Sama_1569	0.42	+0.2
1,913,822	-		Sama_1569	0.42	+0.0
1,913,826	-		Sama_1569	0.42	+0.4
1,913,837	+		Sama_1569	0.43	+1.0
1,913,880	+		Sama_1569	0.47	-1.6
1,913,880	+		Sama_1569	0.47	+3.6
1,913,929	-		Sama_1569	0.51	-0.4
1,913,939	-		Sama_1569	0.52	+0.7
1,913,939	-		Sama_1569	0.52	+0.1
1,913,957	+		Sama_1569	0.53	+1.2
1,913,958	-		Sama_1569	0.53	-0.4
1,914,000	+		Sama_1569	0.57	+1.8
1,914,000	+		Sama_1569	0.57	-0.0
1,914,000	+		Sama_1569	0.57	+0.7
1,914,001	-		Sama_1569	0.57	+0.0
1,914,001	-		Sama_1569	0.57	-0.0
1,914,001	-		Sama_1569	0.57	+0.6
1,914,010	+		Sama_1569	0.58	+0.3
1,914,010	+		Sama_1569	0.58	-0.4
1,914,089	-		Sama_1569	0.65	-1.6
1,914,120	+		Sama_1569	0.67	-0.8
1,914,120	+		Sama_1569	0.67	+1.2
1,914,191	-		Sama_1569	0.74	+1.1
1,914,191	-		Sama_1569	0.74	-0.0
1,914,275	+		Sama_1569	0.81	-0.3
1,914,275	+		Sama_1569	0.81	+0.2
1,914,276	-		Sama_1569	0.81	-0.5
1,914,276	-		Sama_1569	0.81	-0.3
1,914,276	-		Sama_1569	0.81	+0.1
1,914,277	+		Sama_1569	0.81	-0.6
1,914,277	+		Sama_1569	0.81	+1.0
1,914,278	-		Sama_1569	0.81	+0.1
1,914,327	-		Sama_1569	0.85	+1.3
1,914,356	+		Sama_1569	0.88	+0.4
1,914,356	+		Sama_1569	0.88	-0.9
1,914,357	-		Sama_1569	0.88	+0.6
1,914,357	-		Sama_1569	0.88	-0.3
1,914,367	+		Sama_1569	0.89	-0.6
1,914,367	+		Sama_1569	0.89	-0.3
1,914,368	-		Sama_1569	0.89	-0.3
1,914,368	-		Sama_1569	0.89	+0.3
1,914,371	+		Sama_1569	0.89	-1.0
1,914,371	+		Sama_1569	0.89	-0.7
1,914,379	+		Sama_1569	0.90	-0.4
1,914,379	+		Sama_1569	0.90	-0.8
1,914,379	+		Sama_1569	0.90	+0.6
1,914,379	+		Sama_1569	0.90	+0.2
1,914,379	+		Sama_1569	0.90	-0.2
1,914,380	-		Sama_1569	0.90	+0.6
1,914,380	-		Sama_1569	0.90	-0.4
1,914,513	-				-0.8
1,914,535	+				+2.1
1,914,554	-				+0.4
1,914,555	+				+0.3
1,914,555	+				+0.6
1,914,555	+				-1.0
1,914,555	+				-0.5
1,914,555	+				-0.8
1,914,576	+				-2.0
1,914,576	+				+1.3
1,914,576	+				-0.3
1,914,577	-				+0.6
1,914,653	-				+0.4
1,914,713	-				+1.1
1,914,713	-				-1.6
1,914,713	-				+2.1
1,914,717	+				-0.9
1,914,733	-				+1.3
1,914,733	-				+0.7
1,914,802	+		Sama_1570	0.12	-1.0
1,914,981	+		Sama_1570	0.32	+1.1
1,914,982	-		Sama_1570	0.32	+0.7
1,914,982	-		Sama_1570	0.32	-0.1
1,915,131	+		Sama_1570	0.48	-1.1
1,915,131	+		Sama_1570	0.48	+0.1
1,915,131	+		Sama_1570	0.48	-0.4
1,915,139	+		Sama_1570	0.49	+0.2
1,915,155	-		Sama_1570	0.51	-0.4
1,915,155	-		Sama_1570	0.51	+0.6
1,915,157	+		Sama_1570	0.51	-0.2
1,915,157	+		Sama_1570	0.51	-0.4
1,915,157	+		Sama_1570	0.51	+0.7
1,915,158	-		Sama_1570	0.51	-0.3
1,915,158	-		Sama_1570	0.51	+0.6
1,915,161	-		Sama_1570	0.52	-0.4
1,915,161	-		Sama_1570	0.52	-0.6
1,915,229	-		Sama_1570	0.59	+1.2
1,915,263	+		Sama_1570	0.63	+0.6
1,915,263	+		Sama_1570	0.63	+1.2
1,915,264	-		Sama_1570	0.63	+0.6
1,915,264	-		Sama_1570	0.63	+1.0
1,915,336	-		Sama_1570	0.71	-0.4
1,915,340	+		Sama_1570	0.71	-0.7
1,915,355	-		Sama_1570	0.73	-0.5
1,915,358	-		Sama_1570	0.73	+7.5
1,915,429	+		Sama_1570	0.81	-0.1
1,915,430	-		Sama_1570	0.81	+0.6
1,915,430	-		Sama_1570	0.81	+0.5
1,915,475	+		Sama_1570	0.86	-0.3
1,915,475	+		Sama_1570	0.86	-1.8
1,915,540	+				-0.3
1,915,541	-				+1.6
1,915,541	-				+1.3
1,915,548	+				+0.3
1,915,609	+				+0.8
1,915,609	+				-1.1
1,915,609	+				+0.2
1,915,609	+				+0.2
1,915,609	+				+0.1
1,915,609	+				-2.0
1,915,610	-				-0.4
1,915,659	+				-1.0
1,915,659	+				+0.8
1,915,660	-				-0.0
1,915,662	+				+1.0
1,915,662	+				+0.4
1,915,662	+				-0.1
1,915,670	-				-0.4
1,915,687	+				+0.8
1,915,737	+				+0.4
1,915,738	-				+0.4
1,915,824	+		Sama_1571	0.14	+0.4
1,915,824	+		Sama_1571	0.14	+1.0
1,915,824	+		Sama_1571	0.14	-1.3
1,915,824	+		Sama_1571	0.14	-1.6
1,915,824	+		Sama_1571	0.14	+0.6
1,915,825	-		Sama_1571	0.14	-0.8
1,915,825	-		Sama_1571	0.14	+1.0
1,915,825	-		Sama_1571	0.14	-0.2
1,915,825	-		Sama_1571	0.14	-1.0
1,915,825	-		Sama_1571	0.14	-0.0
1,915,919	+		Sama_1571	0.26	-0.0
1,915,919	+		Sama_1571	0.26	+1.0
1,915,919	+		Sama_1571	0.26	+2.0
1,915,919	+		Sama_1571	0.26	-0.4
1,915,919	+		Sama_1571	0.26	+1.3
1,915,919	+		Sama_1571	0.26	-0.3
1,915,919	+		Sama_1571	0.26	+0.2
1,915,919	+		Sama_1571	0.26	-1.9
1,915,920	-		Sama_1571	0.26	-0.8
1,915,920	-		Sama_1571	0.26	-1.8
1,915,943	+		Sama_1571	0.29	-1.2
1,915,944	-		Sama_1571	0.29	+0.3
1,915,955	+		Sama_1571	0.31	-0.0
1,915,973	+		Sama_1571	0.33	+0.7
1,916,001	+		Sama_1571	0.37	+0.6
1,916,002	-		Sama_1571	0.37	+1.6
1,916,010	-		Sama_1571	0.38	+0.0
1,916,111	+		Sama_1571	0.50	+0.3
1,916,111	+		Sama_1571	0.50	-0.0
1,916,111	+		Sama_1571	0.50	+0.2
1,916,111	+		Sama_1571	0.50	+0.7
1,916,112	-		Sama_1571	0.51	+0.3
1,916,153	+		Sama_1571	0.56	+1.6
1,916,153	+		Sama_1571	0.56	+0.2
1,916,153	+		Sama_1571	0.56	-0.0
1,916,312	+		Sama_1571	0.76	+0.2
1,916,323	+		Sama_1571	0.77	+0.4
1,916,323	+		Sama_1571	0.77	+0.9
1,916,402	+		Sama_1571	0.87	+0.3
1,916,415	-		Sama_1571	0.89	-0.0
1,916,506	-				+0.6
1,916,510	+				+0.3
1,916,546	+				-0.6
1,916,546	+				+1.4
1,916,546	+				-0.0
1,916,553	-				-1.5
1,916,581	-				-0.2